New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3692345	78 (0.910)	4 (0.050)	4/336	NT	5.6%	coding (241/756 nt)	PP_3258	conserved protein of unknown function
	?	AE015451	= 3692593	62 (0.760)					coding (1033/1044 nt)	PP_3259	Acyl‑CoA dehydrogenase‑related protein

GATCGCAATGACCGTCACTGCGCCAGGTGGCCATCAGCAGGTCATCGGCGCGCAGTAACTGGGTGAGGTGACGGGTCAGAAACGCTTCTTCGCGCGGCAACTGGCCGTCCTTCAGGTGGAGCCTGCGCCAGTCCAGGCGTTCAAGGTCCAGGTCGAGCTGTTGCAGGGCCAGTCGGCTTTCCTGGGGGCGCTGGCGGCGCAATCGATGTTCGGTCCAGTGACTGGAGCCGGGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3692111‑3692345 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccggggtgTGGCAACTATGAGCCAGAACCTGATCCAGTCCGCGGGCGGCACGCCTTGGGCAGCCTGGCAGCAAAGCGCGCACCTGGCGCGTGCGACCTGGCTCGACTCACGCCAACTGTGCCCGCCGGGGCGCCGGCTGGTATTGATCGCGCCGCATCCGGATGACGAAATTCTCATGGCTGGCGGCCTGCTGGCAGGCTTCAAGGGGC  <  AE015451/3692593‑3692393                                                                                                                                                                                                                                                                                                                                                                                                                                                      GATCGCAATGACCGTCACTGCGCCAGGTGGCCATCAGCAGGTCATCGGCGCGCAGTAACTGGGTGAGGTGACGGGTCAGAAACGCTTCTTCGCGCGGCAACTGGCCGTCCTTCAGGTGGAGCCTGCGCCAGTCCAGGCGTTCAAGGTCCAGGTCGAGCTGTTGCAGGGCCAGTCGGCTTTCCTGGGGGCGCTGGCGGCGCAATCGATGTTCGGTCCAGTGACTGGAGCCGGG                                                                                                                                                                                                              >  2:1451023/1‑232            CCGTCACTGCGCCAGGTGGCCATCAGCAGGTCATCGGCGCGCAGTAACTGGGTGAGGTGACGGGTCAGAAACGCTTCTTCGCGCGGCAACTGGCCGTCCTTCAGGTGGAGCCTGCGCCAGTCCAGGCGTTCAAGGTCCAGGTCGAGCTGTTGCAGGGCCAGTCGGCTTTCCTGGGGGCGCTGGCGGCGCAATCGATGTTCGGTCCAGTGACTGGAGCCGGGGT                                                                                                                                                                                                            >  1:719618/1‑223            CCGTCACTGCGCCAGGTGGCCATCAGCAGGTCATCGGCGCGCAGTAACTGGGTGAGGTGACGGGTCAGAAACGCTTCTTCGCGCGGCAACTGGCCGTCCTTCAGGTGGAGCCTGCGCCAGTCCAGGCGTTCAAGGTCCAGGTCGAGCTGTTGCAGGGCCAGTCGGCTTTCCTGGGGGCGCTGGCGGCGCAATCGATGTTCGGTCCAGTGACTGGAGCCGGGGT                                                                                                                                                                                                            <  2:719616/223‑1                                                                                            GCGCGGCAACTGGCCGTCCTTCAGGTGGAGCCTGCGCCAGTCCAGGCGTTCAAGGTCCAGGTCGAGCTGTTGCAGGGCCAGTCGGCTTTCCTGGGGGCGCTGGCGGCGCAATCGATGTTCGGTCCAGTGACTGGAGCCGGGGTGTGGCAACTATGA                                                                                                                                                                                               <  1:1099772/156‑1                                                                                                                               GCCAGTCCAGGCGTTCAAGGTCCAGGTCGAGCTGTTGCAGGGCCAGTCGGCTTTCCTGGGGGCGCTGGCGGCGCAATCGATGTTCGGTCCAGTGACTGGAGCCGGGGTGTGGCAACTATGAGCCAGAACCTGATCCAGTCCGCGGGCGGCACGCCTTGGGCAGCCTGGCAGCAAAGC                                                                                                                                       <  1:1078663/177‑1                                                                                                                               GCCAGTCCAGGCGTTCAAGGTCCAGGTCGAGCTGTTGCAGGGCCAGTCGGCTTTCCTGGGGGCGCTGGCGGCGCAATCGATGTTCGGTCCAGTGACTGGAGCCGGGGTGTGGCAACTATGAGCCAGAACCTGATCCAGTCCGCGGGCGGCACGCCTTGGGCAGCCTGGCAGCAAAGC                                                                                                                                       >  2:1078660/1‑177                                                                                                                                                         TCGAGCTGTTGCAGGGCCAGTCGGCTTTCCTGGGGGCGCTGGCGGCGCAATCGATGTTCGGTCCAGTGACTGGAGCCGGGG                                                                                                                                                                                                             >  1:1033104/1‑81                                                                                                                                                         TCGAGCTGTTGCAGGGCCAGTCGGCTTTCCTGGGGGCGCTGGCGGCGCAATCGATGTTCGGTCCAGTGACTGGAGCCGGGG                                                                                                                                                                                                             <  2:1033101/81‑1                                                                                                                                                                             TCGGCTTTCCTGGGGGCGCTGGCGGCGCAATCGATGTTCGGTCCAGTGACTGGAGCCGGGGTGTGGCAACTAGGAGCCAGAACCTGATCCAGTCCGCGGGCGGCACGCCTTGGGCAGCCTGGCAGCAAA                                                                                                                                         <  2:234517/129‑1                                                                                                                                                                                                                                    CCGGGGTGTGGCAACTATGAGCCAGAACCTGATCCAGTCCGCGGGCGGCACGCCTTGGGCAGCCTGGCAGCAAAGCGCGCACCTGGCGCGTGCGACCTGGCTCGACTCACGCCAACTGTGCCCGCCGGGGCGCCGGCTGGTATTGATCGCGCCGCATCCGGATGACGAAATTCTCATGGCTGGCGGCCTGCTGGCAGGCTTCAAGGGG   <  2:1016284/208‑1                                                                                                                                                                                                                                     CGGGGTGTGGCAACTATGAGCCAGAACCTGATCCAGTCCGCGGGCGGCACGCCTTGGGCAGCCTGGCAGCAAAGCGCGCACCTGGCGCGTGCGACCTGGCTCGACTCACGCCAACTGTGCCCGCCGGGGCGCCGGCTGGTATTGATCGCGCCGCATCCGGATGACGAAATTCTCATGGCTGGCGGCCTGCTGGCAGGCTTCAA       <  2:704392/203‑1                                                                                                                                                                                                                                          TGTGGCAACTATGAGCCAGAACCTGATCCAGTCCGCGGGCGGCACGCCTTGGGCAGCCTGGCAGCAAAGCGCGCACCTGGCGCGTGCGACCTGGCTCGACTCACGCCAACTGTGCCCGCCGGGGCGCCGGCTGGTATTGATCGCGCCGCATCCGGATGACGAAATTCTCATGGCTGGCGGCCTGCTGGCAGGCTTCAAGGGGC  >  2:1396449/1‑203                                                                                                                                                                                                                                                                                                                                                                                                                                                      GATCGCAATGACCGTCACTGCGCCAGGTGGCCATCAGCAGGTCATCGGCGCGCAGTAACTGGGTGAGGTGACGGGTCAGAAACGCTTCTTCGCGCGGCAACTGGCCGTCCTTCAGGTGGAGCCTGCGCCAGTCCAGGCGTTCAAGGTCCAGGTCGAGCTGTTGCAGGGCCAGTCGGCTTTCCTGGGGGCGCTGGCGGCGCAATCGATGTTCGGTCCAGTGACTGGAGCCGGGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3692111‑3692345 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccggggtgTGGCAACTATGAGCCAGAACCTGATCCAGTCCGCGGGCGGCACGCCTTGGGCAGCCTGGCAGCAAAGCGCGCACCTGGCGCGTGCGACCTGGCTCGACTCACGCCAACTGTGCCCGCCGGGGCGCCGGCTGGTATTGATCGCGCCGCATCCGGATGACGAAATTCTCATGGCTGGCGGCCTGCTGGCAGGCTTCAAGGGGC  <  AE015451/3692593‑3692393

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.