New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AE015451 = 384530654 (0.630)6 (0.070) 6/340 NT 10.3% coding (328/930 nt) PP_3394 putative 3‑hydroxy‑3‑methylglutaryl‑CoA lyase
?AE015451 = 3845318 53 (0.650)coding (316/930 nt) PP_3394 putative 3‑hydroxy‑3‑methylglutaryl‑CoA lyase

GTGTCCCCCAGGGAGACCAGGTCGCAACCGGCTTCGATCACCTGGCGGGTCAACGCACACAGGTCAGCCAGCGGCACCTCGCCCTGGCGGGTGCAGCCAAAGGCCACTGACATGCCGGCCACGACTTGCACCCCATGCAGGCCCATTTCAGTACGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3845098‑3845306
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcgcacAGCCTGGCCAACGTGCGCCGCACGCCAGTGGAGATGGTCGAGGAACTGGGGCGCATGTGCCAGCTGCGTACTGAAATGGGCCTGCATGGGGTGCAAGTCGTGGCCGGCATGTCAGTGGCCTTTGGCTGCACCCGCCAGGGCGAGGTGCCGCTGGCTGACCTGTGTGCGTTGACCCGCCAGGTGATCGAAGCCGGTTGCGACCTGGTCTCCCTGGGGGACACCACTGGCTATGC  <  AE015451/3845318‑3845086
                                                                                                                                                                                                                                                                                                                                                                                                                                                          
GTGTCCCCCAGGGAGACCAGGTCGCAACCGGCTTCGATCACCTGGCGGGTCAACGCACACAGGTCAGCCAGCGGCACCTCGCCCTGGCGGGTGCAGCCAAAGGCCACTGACATGCCGGCCACGACTTGCACCCCATGCAGGCCCATTTCAGTACGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCA                                                                                                                                                                                                                                            <  2:985897/208‑1
              GACCAGGTCGCAACCGGCTTCGATCACCTGGCGGGTCAACGCACACAGGTCAGCCAGCGGCACCTCGCCCTGGCGGGTGCAGCCAAAGGCCACTGACATGCCGGCCACGACTTGCACCCCATGCAGGCCCATTTCAGTACGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGC                                                                                                                                                                                                                                                  >  1:1489299/1‑188
                  AGGTCGCAACCGGCTTCGATCACCTGGCGGGTCAACGCACACAGGTCAGCCAGCGGCACCTCGCCCTGGCGGGTGCAGCCAAAGGCCACTGACATGCCGGCCACGACTTGCACCCCATGCAGGCCCATTTCAGTACGCCGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCcg                                                                                                                                                                                                                                                >  1:427902/1‑184
                  AGGTCGCAACCGGCTTCGATCACCTGGCGGGTCAACGCACACAGGTCAGCCAGCGGCACCTCGCCCTGGCGGGTGCAGCCAAAGGCCACTGACATGCCGGCCACGACTTGCACCCCATGCAGGCCCATTTCAGTACGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGC                                                                                                                                                                                                                                                  >  2:1073701/1‑184
                     TCGCAACCGGCGTCGATCACCTGGCGGGTCAACGCACACAGGTCAGCCAGCGGCACCTCGCCCTGGCGGGTGCAGCCAAAGGCCACTGACATGCCGGCCACGACTTGCACCCCATGCAGGCCCATTTCAGTACGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGC                                                                                                                                                                                                                                             <  2:805236/186‑1
                         AACCGGCTTCGATCACCTGGCGGGTCAACGCACACAGGTCAGCCAGCGGCACCTCGCCCTGGCGGGTGCAGCCAAAGGCCACTGACATGCCGGCCACGACTTGCACCCCATGCAGGCCCATTTCAGTACGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCA                                                                                                                                                                                                                                            >  1:815280/1‑183
                                                      GCACACAGGTCAGCCAGCGGCACCTCGCCCTGGCGGGTGCAGCCAAAGGCCACTGACATGCCGGCCACGACTTGCACCCCATGCAGGCCCATTTCAGTACGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGC                                                                                                                                                                                                                                                  >  2:106624/1‑148
                                                                                                             ACATGCCGGCCACGACTTGCACCCCATGCAGGCCCATTTCAGTGCGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACCGGCGTGGGGgg                                                                                                                                                                                                                                              >  1:272468/1‑95
                                                                                                                                              CCATTTCAGTACGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGC                                                                                                                                                                                                                                               >  1:309482/1‑63
                                                                                                                                                ATTTCAGTACGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCACAGCCTGGCCAACGTGCGCCGCACGCCAGTGGAGATGGTCGAGGAA                                                                                                                                                                                              >  1:525750/1‑110
                                                                                                                                                     AGTACGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCA                                                                                                                                                                                                                                            >  2:268790/1‑59
                                                                                                                                                               TGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCACAGCCTGGCCAACGTGCGCCGCACGCCAGTGGAGATGGTCGAGGAACTGGGGCGCATGTGCCAGCTGCGTACTGAAATGGGCCTGCATGGGGTGCAAGTCGTGGCCGGCAT                                                                                                                             >  2:1046760/1‑160
                                                                                                                                                                 GCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCACAGCCTGGCCAACGTGCGCCGCACGCCCGTGGGGATGGGCGGGGGACTGGGGCGCATGTGCCCGCTGCGTACTGAAATGGGCCGGCCTGGGGTGCGAGTC                                                                                                                                        >  1:1212837/1‑147
                                                                                                                                                                 GCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCG                                                                                                                                                                                                                                                 >  1:1340751/1‑42
                                                                                                                                                                    CATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCG                                                                                                                                                                                                                                                 >  1:1122579/1‑39
                                                                                                                                                                                  CCTCGACCATCTCCACTGGCGTGCGGCGCACAGCCTGGCCAACGTGCGCCGCACGCCAGTGGAGATGGTCGAGGAACTGGGGCGCATGTGCCAGCTGCGTACTGAAATGGGCCTGCATGGGGGGCAAGTCGTGGCCGGCATGTCAGTGGCCTTTGGC                                                                                                             >  2:11634/1‑157
                                                                                                                                                                                   CTCGCCCATCTCCACTGGCGTGCGGCGCACAGCCTGGCCAACGTGCGCCGCACGCCAGTGGAGATGGTCGAGGAACTGGGGCGCATGTGCCAGCTGCGTACTGAAATGGGCCTGCATGGGGTGCAAGTCGTGGCCGGCATGTCAGTGGCCTTTGGCTGCACCCGCCAGGGCGAGGTGCCGCTGGCTG                                                                              <  1:11634/187‑1
                                                                                                                                                                                             TCCACTGGCGTGCGGCGCACAGCCTGGCCAACGTGCGCCGCACGCCAGGGGAGATGGTCGAGGCACTGGGGCGCATGTGCCAGCTGCCTTCTGAAATGGGCCTGCATGGGGGGCCAGGCGTGGCCGGCAT                                                                                                                             >  2:1333259/1‑130
                                                                                                                                                                                                        GCGGCGCACAGCCTGGCCAACGTGCGCCGCACGCCAGTGGAG                                                                                                                                                                                                          >  2:1340748/1‑42
                                                                                                                                                                                                          GGCGCACAGCCTGGCCAACGTGCGCCGCACGCCAGTGGAGATGGTCGAGGAACTGGGGCGCATGTGCCAGCTGCGTACTGAAATGGGCCTGCATGGGGTGCAAGTCGTGGCCGGCATGTCAGTGGCCTTTGGCTGCACCCGCTAGGGCGAGGTGCCGCTGGCTGACCTGTGTGCGTTGACCCGCCAGGTGATCGAAGCCGGTTGCGACCTGGTCTCCCTGGGGGACACCACTGGCT      >  1:1458340/1‑236
                                                                                                                                                                                                          GGCGCACAGCCTGGCCAACGTGCGCCGCACGCCAGTGGAGATGGTCGAGGAACTGGGGCGCATGTGCCAGCTGCGTACTGAAATGGGCCTGCATGGGGGGCAAGTCGTGGCCGGCCTGTCAGCGGCCTTTGGCTG                                                                                                           >  2:480856/1‑135
                                                                                                                                                                                                               ACAGCCTGGCCAACGTGCGCCGCACGCCAGTGGAGATGGTCGAGGAACTGGGGCGCATGTGCCAGCTGCGTACTGAAATGGGCCTGCATGGGGTGCAAGTCGTGGCCGGCATGTCAGTGGCCTTTGGCTGCACCCGCCAGGGCGAGGTGCCGCTGGCTGACCTGTGTGCGTTGACCCGCCAGGTGATCGAAGCCGGTTGCGACCTGGTCTCCCTGGGGGACACCACTGGCTATGC  >  1:737673/1‑235
                                                                                                                                                                                                                                                                                                                                                                                                                                                          
GTGTCCCCCAGGGAGACCAGGTCGCAACCGGCTTCGATCACCTGGCGGGTCAACGCACACAGGTCAGCCAGCGGCACCTCGCCCTGGCGGGTGCAGCCAAAGGCCACTGACATGCCGGCCACGACTTGCACCCCATGCAGGCCCATTTCAGTACGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3845098‑3845306
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcgcacAGCCTGGCCAACGTGCGCCGCACGCCAGTGGAGATGGTCGAGGAACTGGGGCGCATGTGCCAGCTGCGTACTGAAATGGGCCTGCATGGGGTGCAAGTCGTGGCCGGCATGTCAGTGGCCTTTGGCTGCACCCGCCAGGGCGAGGTGCCGCTGGCTGACCTGTGTGCGTTGACCCGCCAGGTGATCGAAGCCGGTTGCGACCTGGTCTCCCTGGGGGACACCACTGGCTATGC  <  AE015451/3845318‑3845086

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.