New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3845306	54 (0.630)	6 (0.070)	6/340	NT	10.3%	coding (328/930 nt)	PP_3394	putative 3‑hydroxy‑3‑methylglutaryl‑CoA lyase
	?	AE015451	= 3845318	53 (0.650)					coding (316/930 nt)	PP_3394	putative 3‑hydroxy‑3‑methylglutaryl‑CoA lyase

GCATAGCCAGTGGTGTCCCCCAGGGAGACCAGGTCGCAACCGGCTTCGATCACCTGGCGGGTCAACGCACACAGGTCAGCCAGCGGCACCTCGCCCTGGCGGGTGCAGCCAAAGGCCACTGACATGCCGGCCACGACTTGCACCCCATGCAGGCCCATTTCAGTACGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCAC‑G‑TTGGCCAGGCTGTGCGCCGTGCTCACCGATACCGGGGCGACGATGCGGTGTGCCCCCGATTCAAGTGCGTCCCTTGCGCCACGAAGGTTTGGAGCCAGCACGGTTACTTGCAGGTCCGGGTACGTGAGGGCGTGAGCCACCACTTCGCGGGCATCGGCCATCTGCGGCAGCAAGCGTGCCGGCACGAACGACGCGACTTCCATATGGCGCACGCCGGCGCCGTAAGCGGC  >  AE015451/3845086‑3845537                                                                                                                                                                                                                             |                                                                                                                                                                                                                                          gCATAGCCAGTGGTGTCCCCCAGGGAGACCAGGTCGCAACCGGCTTCGATCACCTGGCGGGTCAACGCACACAGGTCAGCCAGCGGCACCTCGCCCTGGCGGGTGCAGCCAAAGGCCACTGACATGCCGGCCACGACTTGCACCCCATGCAGGCCCATTTCAGTACGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCAC‑G‑TTGGCCAGGCTgt                                                                                                                                                                                                                           >  1:737673‑M2/1‑233 (MQ=255)     aGCCAGTGGTGTCCCCCAGGGAGACCAGGTCGCAACCGGCTTCGATCACCTGGCGGGTCAACGCACACAGGTCAGCCAGCGGCACCTCGCCCTAGCGGGTGCAGCCAAAGGCCACTGACATGCCGGCCACGACTTGCACCCCATGCAGGCCCATTTCAGTACGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCAC‑G‑TTGGCCAGGCTgtgcgcc                                                                                                                                                                                                                      >  1:1458340‑M2/1‑229 (MQ=255)       ccAGTGGTGTCCCCCAGGGAGACCAGGTCGCAACCGGCTTCGATCACCTGGCGGGTCAACGCACACAGGTCAGCCAGCGGCACCTCGCCCTGGCGGGTGCAGCCAAAGGCCACTGACATGCCGGCCACGACTTGCACCCCATGCAGGCCCATTTCAGTACGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCAC‑G‑TTGGCCAGGCTGTGCGCCGt                                                                                                                                                                                                                    <  1:459369/236‑1 (MQ=255)          gtggtgTCCCCCAGGGAGACCAGGTCGCAACCGGCTTCGATCACCTGGCGGGTCAACGCACACAGGTCAGCCAGCGGCACCTCGCCCTGGCGGGTGCAGCCAAAGGCCACTGACATGCCGGCCACGACTTGCACCCCATGCAGGCCCATTTCAGTACGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCAC‑G‑TTGGCCAGGCTGTGCGCCGt                                                                                                                                                                                                                    <  2:957851/233‑1 (MQ=255)               gtCCCCCAGGGAGACCAGGTCGCAACCGGCTTCGATCACCTGGCGGGTCAACGCACACAGGTCAGCCAGCGGCACCTCGCCCTGGCGGGTGCAGCCAAAGGCCACTGACATGCCGGCCACGACTTGCACCCCATGCAGGCCCATTTCAGTACGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCAC‑G‑tt                                                                                                                                                                                                                                      <  1:1351939/210‑1 (MQ=255)                               aGGTCGCAACCGGCTTCGATCACCTGGCGGGTCAACGCACACAGGTCAGCCAGCGGCACCTCGCCCTGGCGGGTGCAGCCAAAGGCCACTGACATGCCGGCCACGACTTGCACCCCATGCAGGCCCATTTCAGTACGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCAC‑G‑TTGGCCAGGCTGTGCGCCGTGCTCAc                                                                                                                                                                                                              >  2:1148726/1‑218 (MQ=255)                               aGGTCGCAACCGGCTTCGATCACCTGGCGGGTCAACGCACACAGGTCAGCCAGCGGCACCTCGCCCTGGCGGGTGCAGCCAAAGGCCACTGACATGCCGGCCACGACTTGCACCCCATGCAGGCCCATTTCAGTACGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCAC‑G‑TTGGCCAGGCTGTGCGCCGTGCTCACCGATACCGGGGcgacg                                                                                                                                                                                              <  2:1070522/234‑1 (MQ=255)                               aGGTCGCAACCGGCTTCGATCACCTGGCGGGTCAACGCACACAGGTCAGCCAGCGGCACCTCGCCCTGGCGGGTGCAGCCAAAGGCCACTGACATGCCGGCCACGACTTGCACCCCATGCAGGCCCATTTCAGTACGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCAC‑G‑TTGGCCAGGCTGTGCGCCGTGCTCACCGATACCGGGGcgac                                                                                                                                                                                               >  1:1371229/1‑233 (MQ=255)                                        ccGGCTTCGATCACCTGGCGGGTCAACGCACACAGGTCAGCCAGCGGCACCTCGCCCTGGCGGGTGCAGCCAAAGGCCACTGACATGCCGGCCACGACTTGCACCCCATGCAGGCCCATTTCAGTACGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCAC‑G‑TTGGCCAGGCTGTGCGCCGTGCTCACCGATACCGGGGCGACGATGCGgtgt                                                                                                                                                                                     <  1:43643/234‑1 (MQ=255)                                             ttCGATCACCTGGCGGGTCAACGCACACAGGTCAGCCAGCGGCACCTCGCCCTGGCGGGTGCAGCCAAAGGCCACTGACATGCCGGCCACGACTTGCACCCCATGCAGGCCCATTTCAGTACGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCAC‑G‑TTGGCCAGGCTGTGCGCCGTGCTCACCGATACCGGGGCGACGATGCGGTGTGCCCCCg                                                                                                                                                                              <  1:730408/236‑1 (MQ=255)                                                gATCACCTGGCGGGTCAACGCACACAGGTCAGCCAGCGGCACCTCGCCCTGGCGGGTGCAGCCAAAGGCCACTGACATGCCGGCCACGACTTGCACCCCATGCAGGCCCATTTCAGTACGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCAC‑G‑TTGGCCAGGCTGTGCGCCGTGCTCACCGATACCGGGGCGACGATGCGGTGTGCCCCCg                                                                                                                                                                              <  2:580255/233‑1 (MQ=255)                                                    aCCTGGCGGGTCAACGCACACAGGTCAGCCAGCGGCACCTCGCCCTGGCGGGTGCAGCCAAAGGCCACTGACATGCCGGCCACGACTTGCACCCCATGCAGGCCCATTTCAGTACGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCAC‑G‑TTGGCCAGGc                                                                                                                                                                                                                              <  2:1004629/181‑1 (MQ=255)                                                                 aCGCACACAGGTCAGCCAGCGGCACCTCGCCCTGGCGGGTGCAGCCAAAGGCCACTGACATGCCGGCCACGACTTGCACCCCATGCAGGCCCATTTCAGTACGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCAC‑G‑TTGGCCAGGCTGTGCGCCGTGCTCACCGATACCg                                                                                                                                                                                                      <  2:1489296/192‑1 (MQ=255)                                                                            tCAGCCAGCGGCACCTCGCCCTGGCGGGTGCAGCCAAAGGCCACTGACATGCCGGCCACGACTTGCACCCCATGCAGGCCCATTTCAGTACGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCAC‑G‑TTGGCCAGGCTGTGCGCCGTGCTCACCGATACCCGGGcgacg                                                                                                                                                                                              >  2:778497/1‑189 (MQ=255)                                                                             cagccagcGGCACCTCGCCCTGGCGGGTGCAGCCAAAGGCCACTGACATGCCGGCCACGACTTGCACCCCATGCAGGCCCATTTCAGTACGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCAC‑G‑TTGGCCAGGCTgtgcgccgcacgccagtggagatgggcgag                                                                                                                                                                                               <  1:11634‑M2/187‑31 (MQ=255)                                                                             cagccagcGGCACCTCGCCCGGGCGGGTGCAGCCAAAGGCCACTGACATGCCGGCCACGACTTGCACCCCATGCAGGCCCATTTCAGTACGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCAC‑G‑TTGGCCAGGCTGTGCGCCGTGCTCACCGATACCGGGGCGACGATGCGGTGTGCCCCCGATTCAAGTGCGTCCCTTGCGCCACGAAGGttt                                                                                                                                              <  1:542241/236‑1 (MQ=255)                                                                                  agcGGCACCTCGCCCTGGCGGGTGCAGCCAAAGGCCACTGACATGCCGGCCACGACTTGCACCCCATGCAGGCCCATTTCAGTACGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCAC‑g                                                                                                                                                                                                                                         >  1:1385254/1‑141 (MQ=255)                                                                                   gcGGCACCTCGCCCTGGCGGGTGCAGCCAAAGGCCACTGACATGCCGGCCACGACTTGCACCCCATGCAGGCCCATTTCAGTACGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCAC‑G‑TTGGCCAGGCTGTGCGCCGTGCTCACCGATACCGGGGCGACGATGCGGTGTGCCCCCGATTCAAGTGCGTCCCTTGCGCCACGAAGGTTTGGAGc                                                                                                                                         >  1:1327606/1‑235 (MQ=255)                                                                                    cGGCACCTCGCCCTGGCGGGTGCAGCCAAAGGCCACTGACATGCCGGCCACGACTTGCACCCCATGCAGGCCCATTTCAGTACGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCAC‑G‑TTGGCCAGGCTGTGCGCCGTGCTCACCGATACCGGGGCGACGATGCGGTGTGCCCCCGATTCAAGTGCGTCCCTTGCGCCACGAAg                                                                                                                                                  <  1:322899/225‑1 (MQ=255)                                                                                             gCCCTGGCGGGTGCAGCCAAAGGCCACTGACATGCCGGCCACGACTTGCACCCCATGCAGGCCCATTTCAGTACGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCAC‑G‑TTGGCCAGGCt                                                                                                                                                                                                                             <  1:1089755/141‑1 (MQ=255)                                                                                                        tGCAGCCAAAGGCCACTGACATGCCGGCCACGACTTGCACCCCATGCAGGCCCATTTCAGTACGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCAC‑G‑TTGGCCAGGCTGTGCGCCGTGCTCACCGATACCGGGGCGACGATGCGGTGTGCCCCCGATTCAAGTGCGTCCCTTGCGCCACGAAGGTTTGGAGCCAGCACGGTTACTTGCAGGTcc                                                                                                                   <  1:412465/236‑1 (MQ=255)                                                                                                          cAGCCAAAGGCCGCTGACAGGCCGGCCACGACTTGCCCCCCATGCAGGCCCATTTCAGTACGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCAC‑G‑TTGGCCAGGCTgtgcgcc                                                                                                                                                                                                                      >  2:480856‑M2/1‑128 (MQ=255)                                                                                                            gCCAAAGGCCACTGACATGCCGGCCACGACTTGCCCCCCATGCAGGCCCATTTCAGTACGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCAC‑G‑TTGGCCAGGCTgtgcgccgcacgccagtggagatggtcgagg                                                                                                                                                                                              >  2:11634‑M2/1‑126 (MQ=255)                                                                                                              cAAAGGCCACTGACATGCCGGCCACGACTTGCACCCCATGCAGGCCCATTTCAGTACGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCAC‑G‑TTGGCCAGGCTGTGCGCCGTGCTCACCGATACCGGGGCGACGATGCGGTGTGCCCCCGATTCAAGTGCGTCCCTTGCGCCACGAAGGTTTGGAGCCAGCACGGTTACTTGCAGGTCCGGGTAc                                                                                                             <  1:402828/236‑1 (MQ=255)                                                                                                                         gACATGCCGGCCACGACTTGCACCCCATGCAGGCCCATTTCAGTACGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCAC‑G‑TTGGCCAGGCTGTGCGCCGTGCTCACCGATACCGGGGCGACGATGCGGTGTGCCCCCGATTCAAGTGCGTCCCTTGCGCCACGAAGGTTTGGAGCCAGCACGGTTACTTg                                                                                                                          >  1:664557/1‑212 (MQ=255)                                                                                                                            aTGCCGGCCACGCCTGGCCCCCCATGCAGGCCCATTTCAGAAGGCAGCTGGCACATGCGCCCCAGTGCCTCGACCATCTCCCCTGGCGTGCGGCGCAC‑G‑TTGGCCAGGCTgtgcgccgcacgccagtgga                                                                                                                                                                                                         >  2:1333259‑M2/1‑110 (MQ=255)                                                                                                                            aTGCCGGCCACGACTTGCACCCCATGCAGGCCCATTTCAGTACGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCAC‑G‑TTGGCCAGGCTgtgcgccgcacgccagtggagatggtcgaggaactggggcgcatgtgcca                                                                                                                                                                           >  2:1046760‑M2/1‑110 (MQ=255)                                                                                                                            aTGCCGGCCACGACTTGCACCCCATGCAGGCCCATTTCAGTACGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCAC‑G‑TTGGCCAGGCTGTGCGCCGTGCTCACCGATACCGGGGCGACGATGCGGTGTGCCCCCGATTCAAGTGCGTCCCTTGCGCCACGAAGGTTTGGAGCCAGCACGGTTACTTGCAGGTCCGGGTACGTGAGGGCGTGAGc                                                                                               <  1:1273664/236‑1 (MQ=255)                                                                                                                                cGGCCACGACTTGCACCCCATGCAGGCCCATTTCAGTACGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCAC‑G‑TTGGCCAGGCTGTGCGCCGTGCTCACCGATACCGGGGCGACGATGCGGTGTGCCCCCGATTCAAGTGCGTCCCTTGCGCCACGAAGGTTTGGAGCCAGCACGGTTACTTGCAGGTCCGGGTACGTGAggg                                                                                                      >  1:1090772/1‑225 (MQ=255)                                                                                                                                     aCGACTTGCACCCCATGCAGGCCCATTTCAGTACGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCAC‑G‑TTGGCCAGGCTGTGCGCCGTGCTCACCGATACCGGGGCGACGATGCGGTGTGCCCCCGATTCAAGTGCGTCCCTTGCGCCACGAAGGTTTg                                                                                                                                             >  1:860166/1‑181 (MQ=255)                                                                                                                                       gACTCGCACCCCAGGCCGGCCCATTTCAGTACGCAGCGGGCACATGCGCCCCAGTCCCCCGCCCATCCCCACGGGCGTGCGGCGCAC‑G‑TTGGCCAGGCTgtgcgccgcacgccagtggagatggtcgaggaactggggcgcatgtgc                                                                                                                                                                             >  1:1212837‑M2/1‑99 (MQ=255)                                                                                                                                       cgcTTGCACCCCATGCCGGCCCATTTCAGTACGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCAC‑G‑TTGGCCAGGCTGTGCGCCGTGCTCACCGATACCGGGGCGACGATGCGGTGTGCCCCCGATTCAAGTGCGTCCCTTGCGCCACGAAGGTTTGGAGCCAGCACGGTTACTTGCa                                                                                                                        <  2:226741/198‑1 (MQ=255)                                                                                                                                                cccATGCAGGCCCATTTCAGTACGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCACAGCCTGGCCA‑AC‑GTGCGCCGTGCTCACCGATACCGGGGCGACGATGCGGTGTGCCCCCGATTCAAGTGCGTCCCTTGCGCCACGAAGGTTTGGAGCCAGCACGGTTACTTGCAGGTCCGGGTACGTGAGGGCGTGAGCCACCACTTCGCGGGCa                                                                               >  2:1313128/1‑232 (MQ=255)                                                                                                                                                 ccATGCAGGCCCATTTCAGTACGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCAC‑G‑TTGGCCAGGCTGTGCGCCGTGCTCACCGATACCGGGGCGACGATGCGGTGTGCCCCCGATTCAAGTGCGTCCCTTGCGCCACGAAGGTTTGGAGCCAGCACGGTTACTTGCAGGTCCGGGTACGTGAGGGCGTGAGCCACCACTTCGCGGGCATCGGc                                                                          <  1:401021/236‑1 (MQ=255)                                                                                                                                                     gCAGGCCCATTTCAGTACGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCAC‑G‑TTGGCCAGGCTTTGCGCCGTGCTCACCGATACCGGGGc                                                                                                                                                                                                  >  2:1051932/1‑112 (MQ=255)                                                                                                                                                      cAGGCCCATTTCAGTACGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCAC‑G‑TTGGCCAGGCTGTGCGCCGTGCTCACCGATACCGGGGCGACGATGCGGTGTGCCCCCGATTCAAGTGCGTCCCTTgcgc                                                                                                                                                         >  2:1063697/1‑152 (MQ=255)                                                                                                                                                       aGGCCCATTTCAGTACGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCAC‑G‑TTGGCCAGGCTGTGCGCCGTGCTCACCGATACCGGGGCGACGATGCGGTGTGCCCCCGATTCAAGTGCGTCCCTTGCGCCACGAAGGTTTGGAGCCAGCACGGTTACTTGCAGGTCCGGGTACGTGAGGGCGTGAGCCACCACTTCGCGGGCATCGGCCATc                                                                      >  2:1351751/1‑234 (MQ=255)                                                                                                                                                       aGGCCCATTTCAGTACGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCAC‑G‑TTGGCCAGGCTGTGCGCCGTGCTCACCGATACCGGGGCGACGATGCGGTGTGCCCCCGATTCAAGTGCGTCCCTTGCGCCACGAAGGTTTGGAGCCAGCACGGTTACTTGCAGGTCCGGGTACGTGAGGGCGTGAGCCACCACTTCGCGGGCATCGGCCATCTg                                                                    >  1:915591/1‑236 (MQ=255)                                                                                                                                                             aTTTCAGTACGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCACagcctggccaacgtgcgccgcacgccagtggagatggtcgaggaa                                                                                                                                                                                              >  1:525750‑M1/1‑65 (MQ=255)                                                                                                                                                             aTTTCAGTACGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCAC‑G‑TTGGCCAGGCTGTGCGCCGTGCTCACCGATACCGGGGCGACGATGCGGTGTGCCCCCGATTCAAGTGCGTCCCTTGCGCCACGAAGGTTTGGAGCCAGCACGGTTACTTGCAGGTCCGGGTACGTGAGGGCGTGAGCCACCACTTCGCGGGCATCGGCCATCTGCGgca                                                               >  1:939686/1‑235 (MQ=255)                                                                                                                                                                 cAGTACGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCAC‑G‑TTGGCCAGGCTGTGCGCCGTGCTCACCGATACCGGGGCGACGATGCGGTGTGCCCCCGATTCAAGTGCGGCCCTTGCGCCACgc                                                                                                                                                    >  2:27114/1‑145 (MQ=255)                                                                                                                                                                     tcGCAGCTGTCACATGCGCCCCGGTTCCTCGACCATCTCCACTGGCGTGCGGCTCAC‑G‑TTGGCCAGGCTGTGCGCCGTGCTCACCGATCCCGGGGCGACGATGCGgtgt                                                                                                                                                                                     <  2:265574/108‑1 (MQ=255)                                                                                                                                                                      cGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCAC‑G‑TTGGCCAGGCTGTGCGCCGTGCTCACCGATACCg                                                                                                                                                                                                      >  2:508026/1‑91 (MQ=255)                                                                                                                                                                      cGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCAC‑G‑TTGGCCAGGCTGTGCGCCGTGCTCACCGATACCg                                                                                                                                                                                                      <  1:508028/91‑1 (MQ=255)                                                                                                                                                                      cGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCAC‑G‑TTGGCCAGGCTGTGCGCCGTGCTCACCGATACCGGGGCGACGATGCGGTGTGCCCCCGATTCAAGTGCGTCCCTTGCGCCACGAAGGTTTGGAGCCa                                                                                                                                       <  2:1507430/154‑1 (MQ=255)                                                                                                                                                                            tGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCACagcctggccaacgtgcgccgcacgccagtggagatggtcgaggaactggggcgcatgtgccagctgcgtactgaaatgggcctgcatggggtgcaagtcgtggccggcat                                                                                                                             >  2:1046760‑M1/1‑50 (MQ=255)                                                                                                                                                                              gCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCACagcctggccaacgtgcgccgcacgcccgtggggatgggcgggggactggggcgcatgtgcccgctgcgtactgaaatgggccggcctggggtgcgagtc                                                                                                                                        >  1:1212837‑M1/1‑48 (MQ=255)                                                                                                                                                                              gCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCAC‑G‑TTGGCCAGGCTGTGCGCCGTGCTCACCGATACCGGGGCGACGATGCGGTGTGCCCCCGATTCAAGTGCGTCCCTTGCGCCACGAAGGTTTGGAGCCAGCACGGTTACTTGCAGGTCCGGGTACGTGAGGGCGTGAGCCACCACTTCGCGGGCATCGGCCATCTGCGGCAGCCAGCGTGCCGGccc                                               >  1:1151339/1‑232 (MQ=255)                                                                                                                                                                                 caTGCGCCCCAGGTCCTCGACCATCTCCACGGGCGTGCGGCGCAC‑G‑TTGGCCAGGCTGTGCGCCGTGCTCACCGATACCGGGGCGACGATGCGGTGTGCCCCCGATTCAAGTGCGTCCCTTGCGCCACGAAGGTTTGGAGCCAGCACGGTTACTTGCAGGTCCGGGTACGTGAGGGCGTGAGc                                                                                               <  2:163260/183‑1 (MQ=255)                                                                                                                                                                                   tGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCAC‑G‑TTGGCCAGGCTGTGCGCCGTGCTCACCGATACCGGGGCGACGATGCGGTGTGCCCCCGATTCAAGTGCGTCCCTTGCGCCACGAAGGTTTGGAGCCAGCACGGTTACTTGCAGGTCCGGGTACGTGAGGGCGTGAGCCACCACTTCGCGGGCATCGGCCATCTGCGGCAGCAAGCGTGCCGGCacgaacga                                         <  1:1351754/235‑1 (MQ=255)                                                                                                                                                                                        cccAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCAC‑G‑TTGGCCAGGCTGTGCGCCGTGCTCACCGATACCGGGGCGACGATGCGGTGTGCCCCCGATTCAAGTGCGTCCCTTGCGCCACGGAGGTTTGGAGCCAGCACGGTTACTTGCAGGTCCGGGTACGt                                                                                                           >  2:917367/1‑164 (MQ=255)                                                                                                                                                                                        cccAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCAC‑G‑TTGGCCAGGCTGTGCGCCGTGCTCACCGATACCGGGGCGACGATGCGGTGTGCCCCCGATTCAAGTGCGTCCCTTGCGCCACGAAGGTTTGGAGCCAGCACGGTTACTTGCa                                                                                                                        <  2:1218774/151‑1 (MQ=255)                                                                                                                                                                                          cAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCGC‑G‑TTGGCCAGGCTGTGTGCCGTGCTCACCGATACCggg                                                                                                                                                                                                    >  1:614574/1‑73 (MQ=255)                                                                                                                                                                                             ttCCTCGACCATCTCCACTGGCGTGCGGCGCAC‑G‑TTGGCCAGGCTgtgcgccgcacgccagtggagatggtcgaggaactggggcgcatgtgccagctgcgtactgaaat                                                                                                                                                            >  1:525750‑M2/1‑45 (MQ=255)                                                                                                                                                                                               ccTCGACCATCTCCACTGGCGTGCGGCGCACagcctggccaacgtgcgccgcacgccagtggagatggtcgaggaactggggcgcatgtgccagctgcgtactgaaatgggcctgcatggggggcaagtcgtggccggcatgtcagtggcctttggc                                                                                                             >  2:11634‑M1/1‑31 (MQ=255)                                                                                                                                                                                                cTCGCCCATCTCCACTGGCGTGCGGCGCACagcctggccaacgtgcgccgcacgccagtggagatggtcgaggaactggggcgcatgtgccagctgcgtactgaaatgggcctgcatggggtgcaagtcgtggccggcatgtcagtggcctttggctgcacccgccagggcgaggtgccgctggctg                                                                              <  1:11634‑M1/187‑158 (MQ=255)                                                                                                                                                                                                     ccATCTCCACTGGCGTGCGGCGCAC‑G‑TTGGCCAGGCTGTGCGCCGTGCTCACCGATACCGGGGCGACGATGCGGTGTGCCCCCGATTCAAGTGCGTCCCTTGCGCCACGAAGGTTTGGAGCCAGCACGGTTACTTGCAGGTCCGGGTACGt                                                                                                           >  2:1362130/1‑151 (MQ=255)                                                                                                                                                                                                     ccATCTCCACTGGCGTGCGGCGCAC‑G‑TTGGCCAGGCTGTGCGCCGTGCTCACCGATACCGGGGCGACGATGCGGTGTGCCCCCGATTCAAGTGCGTCCCTTGCGCCACGAAGGTTTGGAGCCAGCACGGTTACTTGCAGGTCCGGGTACGTGAGGGCGTGAGCCACCACTTCGCGGGCATCGGCCATCTGCGGCAGCAAGCGTGCCGGCacgaacga                                         <  1:1148368/217‑1 (MQ=255)                                                                                                                                                                                                         ctcCACTGGCGTGCGGCGCAC‑G‑TTGGCCAGGCTgtgcgccgc                                                                                                                                                                                                                    >  2:1340748‑M2/1‑33 (MQ=255)                                                                                                                                                                                                         ctcCACTGGCGTGCGGCGCAC‑G‑TTGGCCAGGCTGTGCGCCGTGCTCACCGATACCGGGGCGACGATGCGGTGTGCCCCCGATTCAAGTGCGTCCCTTGCGCCACGAAGGTTTGGAGCCAGCACGGTTACTTGCAGGTCCGGGTACGTGAGGGCGTGAGCCACCACTTCGCgg                                                                                  >  1:1196045/1‑172 (MQ=255)                                                                                                                                                                                                         ctcCACTGGCGTGCGGCGCAC‑G‑TTGGCCAGGCTGTGCGCCGTGCTCACCGATACCGGGGCGACGATGCGGTGTGCCCCCGATTCAAGTGCGTCCCTTGCGCCACGAAGGTTTGGAGCCAGCACGGTTACTTGCAGGTCCGGGTACGTGAGGGCGTGAGCCACCACTTCGCGGGCATCGGCCATCTGCGGCAGCAAGCGTGCCGGCACGAACGACGCGACTTcc                               <  2:526851/223‑1 (MQ=255)                                                                                                                                                                                                          tcCACTGGCGTGCGGCGCACagcctggccaacgtgcgccgcacgccaggggagatggtcgaggcactggggcgcatgtgccagctgccttctgaaatgggcctgcatggggggccaggcgtggccggcat                                                                                                                             >  2:1333259‑M1/1‑20 (MQ=255)                                                                                                                                                                                                           ccACTGGCGTGCGGCGCAC‑G‑TTGGCCAGGCTGTGCGCCGTGCTCACCGATACCGGGGCGACGATGCGGTGTGCCCCCGATTCAAGTGCGTCCCTTGCGCCACGAAGGTTTGGAGCCAGCACGGTTACTTGCAGGTCCGGGTACGTGAGGGCGTGAGCCACCACTTCGCGGGCATCGGCCATCTGCGGCAGCAAGCGTGCCGGCacg                                              <  1:1051935/206‑1 (MQ=255)                                                                                                                                                                                                                  cGTGCGGCGCAC‑G‑TTGGCCAGGCTGTGCGCCGTGCTCACCGATACCGGGGCGACGATGCGGTGTGCCCCCGATTCAAGTGCGTCCCTTGCGCCACGAAGGTTTgg                                                                                                                                            <  2:1220121/105‑1 (MQ=255)                                                                                                                                                                                                                  cGTGCGGCGCAC‑G‑TTGGCCAGGCTGTGCGCCGTGCTCACCGATACCGGGGCGACGATGCGGTGTGCCCCCGATTCAAGTGCGTCCCTTGCGCCACGAAGGTTTGGAGCCAGCACGGTTACTTGCAGGTCCGGGTACGTGAGGGCGTGAGCCACCACTTCGCgg                                                                                  >  2:1148365/1‑163 (MQ=255)                                                                                                                                                                                                                  cGTGCGGCGCAC‑G‑TTGGCCAGGCTGTGCGCCGTGCTCACCGATACCGGGGCGACGATGCGGTGTGCCCCCGATTCAAGTGCGTCCCTTGCGCCACGAAGGTTTGGAGCCAGCACGGTTACTTGCAGGTCCGGGTACGTGAGGGCGTGAGCCACCACTTCGCGGGCATCGGCCATCTGCGGCAGCAAGCGTGCCGGCACGAACGACGCGACTTCCATATg                          >  2:1033763/1‑219 (MQ=255)                                                                                                                                                                                                                    tGCGGCGCAC‑G‑TTGGCCAGGCTGTGCGCCGTGCTCACCGATACCGGGGCGACGATGCGGTGTGCCCCCGATTCAAGTGCGTCCCTTGCGCCACGAAGGTTTGGAGc                                                                                                                                         <  2:648895/106‑1 (MQ=255)                                                                                                                                                                                                                    tGCGGCGCAC‑G‑TTGGCCAGGCTGTGCGCCGTGCTCACCGATACCGGGGCGACGATGCGGTGTGCCCCCGATTCAAGTGCGTCCCTTGCGCCACGAAGGTTTGGAGCCAGCACGGTTACTTGCAGGTCCGGGTACGTGAGGGCGTGAGCCACCACTTCGCGGGCATCGGCCATCTGCGGCAGCAAGCGTGCCGGCACGAACGACGCGACTTCCATATGGCGCa                     >  2:572129/1‑222 (MQ=255)                                                                                                                                                                                                                    tGCGGCGCAC‑G‑TTGGCCAGGCTGTGCGCCGTGCTCACCGATACCGGGGCGACGATGCGGTGTGCCCCCGATTCAAGTGCGTCCCTTGCGCCACGAAGGTTTGGAGCCAGCACGGTTACTTGCAGGTCCGGGTACGTGAGGGCGTGAGCCACCACTTCGCGGGCATCGGCCATCTGCGGCAGCAAGCGTGCCGGCACGAACGACGCGACTTCCATATGGCGCACGCCGGCGCCGTa        >  1:1126879/1‑235 (MQ=255)                                                                                                                                                                                                                     gcggcgCACagcctggccaacgtgcgccgcacgccagtggag                                                                                                                                                                                                          >  2:1340748‑M1/1‑9 (MQ=255)                                                                                                                                                                                                                     acggcgCAC‑G‑TTGGCCAGGCTGTGCGCCGTGCTCACCGATACCGGGGCGACGATGCGGTGTGCCCCCGATTCAAGTGCGTCCCTTGCGCCACGAAGGTTTGGAGCCAGCACGGTTACTTGCAGGTc                                                                                                                    >  1:1326643/2‑126 (MQ=255)                                                                                                                                                                                                                     acggcgCAC‑G‑TTGGCCAGGCTGTGCGCCGTGCTCACCGATACCGGGGCGACGATGCGGTGTGCCCCCGATTCAAGTGCGTCCCTTGCGCCACGAAGGTTTGGAGCCAGCACGGTTACTTGCAGGTc                                                                                                                    <  2:1326640/125‑1 (MQ=255)                                                                                                                                                                                                                       ggcgCACagcctggccaacgtgcgccgcacgccagtggagatggtcgaggaactggggcgcatgtgccagctgcgtactgaaatgggcctgcatggggtgcaagtcgtggccggcatgtcagtggcctttggctgcacccgctagggcgaggtgccgctggctgacctgtgtgcgttgacccgccaggtgatcgaagccggttgcgacctggtctccctgggggacaccactggct      >  1:1458340‑M1/1‑7 (MQ=255)                                                                                                                                                                                                                       ggcgCACagcctggccaacgtgcgccgcacgccagtggagatggtcgaggaactggggcgcatgtgccagctgcgtactgaaatgggcctgcatggggggcaagtcgtggccggcctgtcagcggcctttggctg                                                                                                           >  2:480856‑M1/1‑7 (MQ=255)                                                                                                                                                                                                                       ggcgCAC‑G‑TTGGCCAGGCTGTGCGCCGTGCTCACCGATACCGGGGCGACGATGCGGTGTGCCCCCGATTCAAGTGCGTCCCTTGCGCCACGAAGGTTTGGAGCCAGCACGGTTACTTGCAGGTCCGGGTACGTGAGGGCGTGAGCCACCACTTCGCGGGCATCGGCCATCTGCGGCAGCAAGCGTGCCGGCacgaacga                                         >  2:72641/1‑199 (MQ=255)                                                                                                                                                                                                                            acagcctggccaacgtgcgccgcacgccagtggagatggtcgaggaactggggcgcatgtgccagctgcgtactgaaatgggcctgcatggggtgcaagtcgtggccggcatgtcagtggcctttggctgcacccgccagggcgaggtgccgctggctgacctgtgtgcgttgacccgccaggtgatcgaagccggttgcgacctggtctccctgggggacaccactggctatgc  >  1:737673‑M1/1‑2 (MQ=255)                                                                                                                                                                                                                            aC‑G‑TTGGCCAGGCTGTGCGCCGTGCTCACCGATACCGGGGCGACGATGCGGTGTGCCCCCGATTCAAGTGCGTCCCTTGCGCCACGAAGGTTTGGAGCCAGCACGGTTACTTGCAGGTCCGGGTACGTGAGGGCGTGAGCCACCACTTCGCGGGCATCGGCCATCTGCGGCAGCAAGCGTGCCGGCACGAACGACGCGACTTCCat                             >  1:562195/1‑206 (MQ=255)                                                                                                                                                                                                                            aC‑G‑TTGGCCAGGCTGTGCGCCGTGCTCACCGATACCGGGGCGACGATGCGGTGTGCCCCCGATTCAAGTGCGTCCCTTGCGCCACGAAGGTTTGGAGCCAGCACGGTTACTTGCAGGTCCGGGTACGTGAGGGCGTGAGCCACCACTTCGCGGGCATCGGCCATCTGCGGCAGCAAGCGTGCCGGCACGAACGACGCGACTTCCATATGGCGCACGCCGgc              >  1:827859/1‑221 (MQ=255)                                                                                                                                                                                                                             |                                                                                                                                                                                                                                          GCATAGCCAGTGGTGTCCCCCAGGGAGACCAGGTCGCAACCGGCTTCGATCACCTGGCGGGTCAACGCACACAGGTCAGCCAGCGGCACCTCGCCCTGGCGGGTGCAGCCAAAGGCCACTGACATGCCGGCCACGACTTGCACCCCATGCAGGCCCATTTCAGTACGCAGCTGGCACATGCGCCCCAGTTCCTCGACCATCTCCACTGGCGTGCGGCGCAC‑G‑TTGGCCAGGCTGTGCGCCGTGCTCACCGATACCGGGGCGACGATGCGGTGTGCCCCCGATTCAAGTGCGTCCCTTGCGCCACGAAGGTTTGGAGCCAGCACGGTTACTTGCAGGTCCGGGTACGTGAGGGCGTGAGCCACCACTTCGCGGGCATCGGCCATCTGCGGCAGCAAGCGTGCCGGCACGAACGACGCGACTTCCATATGGCGCACGCCGGCGCCGTAAGCGGC  >  AE015451/3845086‑3845537

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.