| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | 4024295 = | 40 (0.470) | 5 (0.060) | 5/340 | NT | 11.9% | coding (214/1536 nt) | emrB | multidrug efflux transport system ‑ permease subunit |
| ? | AE015451 | 4024328 = | 36 (0.440) | coding (181/1536 nt) | emrB | multidrug efflux transport system ‑ permease subunit | |||||
CTGCTGCTGACCACCATCGGCCTGTCGCTCGCGACGTTCATGCAGGTGCTGGACACCACCATCGCCAACGTAGCCCTGCCGACCATTTCCGGCAACCTGGGGGTGAGCTACGAGCAAGGCACTTGGGTCATCACCTCGTTCGCGGTCAGCAACGCTATCGCCTTGCCGCTGACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/4024469‑4024295‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgaccgCGAACGAGGTGATGACCCAAGTGCCTTGCTCGTAGCTCACCCCCAGGTTGCCGGAAATGGTCGGCAGGGCTACGTTGGCGATGGTGGTGTCCAGCACCTGCATGAACGTCGCGAGCGACAGGCCGATGGTGGTCAGCAGCAGACTCGGCGGCGTGAACTGGGCAGCGGCGTTGTTGCTCATCGTTGCGCCGTCTTGCC > AE015451/4024328‑4024525 CTGCTGCTGACCCCCATCGGCCTGTCGCTCGCGACGTTCATGCAGGTGCTGGACACCACCATCGCCAACGTAGCCCTGCCGACCATTTCCGGCAACCTGGGGGTGAGCTACGAGCAAGGCACTTGGGTCATCACCTCGTTCGCGGTCAGCAACGCTATCGCCTTGCCGCTGACCGCGAACGAGGT < 1:284865/185‑1 TCGCTCGCGACTTTCATGCAGGTGCTGGACACCACCATCGCCAACGTAGCCCTGCCGACCATTTCCGGCAACCTGGGGGTGAGCTACGAGCAAGGCACTTGGGTCATCACCTCGTTCGCGGTCAGCAACGCTATCGCCTTGCCGCTGACCGCGAACGCGGTGATGA > 1:1426939/1‑166 ATTTCCGGCAACCTGGGGGTGAGCTACGCGCAAGGCACTTGAGTCATCAGCTCGTTCGCGGTCAGCAACGCTATCGCCTTGCCGCTGACCGCGAACGTGGTGATGACCCAAGTGCCTTGCTCGTAGCTCACCCCCAGGTTGCCGGAAAT < 2:1426936/149‑1 GTGAGCTACCAGCAAGGCACTCGGGTCATCACCTCGTTCGCGGTCAGCAACGCTATCGCCTTGCCGCTGACCGCGAACGAGGTGATGACCCAAGTGCCTTGCTCGTAGCTCACCCCCAGGTTGCCGGAAATGGTCGGCAGGGCTAC < 2:1458223/146‑1 CACCTGGGTCATCACCTCGTTCGCGGTCAGCAACGCTATCGCCTTGCCGCTGACCGCGAACGAGGTGATGACCCAAGTGCCTTGCTCGTAGCTCACCCCCAGGTTGCCGGAAATGGTCGGCAGGGCTACGTTGGCG < 2:1326992/136‑1 TCGCGGTCAGCAACGCTATCGCCTTGCCGCTGACCG > 2:574466/1‑36 CTGACCGCGAACGAGGTGATGACCCAAGTGCCTTGCTCGTAGCTCACCCCCAGGTTGCCGGAAATGGTCGGCAGGGCTACGCTGGCGATGGCGGTGTCCAGCACCTGCATGATCGTCGCGAGCGACGGGCCGATGGTGGTCAGCAGCAGACTCGGCc > 2:483494/1‑156 TGACCGCGAACGAGGTGATGACCCAAGTGCCTTGCTCGTAGCTCACCCCCAGGTTGCCGGAAATGGTCGGCAGGGCTACGTTGGCGATGGTGGTGTCCAGCACCTGCATGAACGTCGCGAGCGACAGGCCGATGGTGGTCAGCAGCAGACTCGGCGGCGTGAACTGGGCAGCGGCGTTGTTGCTCATCGTTGCGCCGTCTTGCC > 2:692508/1‑204 CTGCTGCTGACCACCATCGGCCTGTCGCTCGCGACGTTCATGCAGGTGCTGGACACCACCATCGCCAACGTAGCCCTGCCGACCATTTCCGGCAACCTGGGGGTGAGCTACGAGCAAGGCACTTGGGTCATCACCTCGTTCGCGGTCAGCAACGCTATCGCCTTGCCGCTGACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/4024469‑4024295‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgaccgCGAACGAGGTGATGACCCAAGTGCCTTGCTCGTAGCTCACCCCCAGGTTGCCGGAAATGGTCGGCAGGGCTACGTTGGCGATGGTGGTGTCCAGCACCTGCATGAACGTCGCGAGCGACAGGCCGATGGTGGTCAGCAGCAGACTCGGCGGCGTGAACTGGGCAGCGGCGTTGTTGCTCATCGTTGCGCCGTCTTGCC > AE015451/4024328‑4024525 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |