New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5225862	77 (0.900)	12 (0.150)	11/336	NT	14.9%	coding (100/876 nt)	PP_4605	Transcriptional regulator, AraC family
	?	AE015451	= 5225953	64 (0.790)					coding (191/876 nt)	PP_4605	Transcriptional regulator, AraC family

ATCACCAGTGTTCTTGCGATCGGCCTCTGGCTGCTTGCACAAACTTGCGCTTTTCTTGCGCCGGTAGCTGTCACTCGATCCAGGGCGCAGTAGGATGGCAGGCAAGAGGACCCGCCCATGACGCCACTCACCCAGTTGCAAGTGTTCAACGCCATGCATGCCTCGCCCAATGCCAGGCTGGAGCTGAGCGCGCACCTGGGCGACGGACTGGCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5225646‑5225862 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcggcggAAGGTGCCGGTGCCGTCGGCGATGTAGCACGACAAGGTGTGATGGCTAGGCGCCTGGTAGTCGCGCGCATCGTCACGGTTGCTCCACAACGCCGCCGCCAGTCCGTCGCCCAGGTGCGCGCTCAGCTCCAGCCTGGCATTGGGCGAGGCATGCATGGCGTTGA  <  AE015451/5225953‑5225791                                                                                                                                                                                                                                                                                                                                                                                              ATCACCAGTGTTCTTGCGATCGGCCTCTGGCTGCTTGCACAAACTTGCGCTTTTCTTGCGCCGGTAGCTGTCACTCGATCCAGGGCGCAGTAGGATGGCAGGCAAGAGGACCCGCCCATGACGCCACTCACCCAGTTGCAAGTGTTCAACGCCATGCATGCCTCGCCCAATGCCAGGCTGGAGCTGAGCGCGCACCTGGGCGACGGACTGGCG                                                                                                                                                                         <  2:1069464/213‑1   CACCAGTGTTCTTGCGATCGGCCTCTGGCTGCTTGCACAAACTTGCGCTTTTCTTGCGCCGGTAGCTGTCACTCGATCCAGGGCGCAGTAGGATGGCAGGCAAGAGGACCCGCCCATGACGCCACTCACCCAGTTGCAAGTGTTCAACGCCATGCATGCCTCGCCCAATGCCAGGCTGGAGCTGAGCGCGCACCTGGGCGACGGACTGGCGGCGGAAGGTGCCGGTGCCGTCGGCG                                                                                                                                                <  1:1277748/236‑1    ACCAGTGTTCTTGCGATCGGCCTCTGGCTGCTTGCACAAACTTGCGCTTTTCTTGCGCCGGTAGCTGTCACTCGATCCAGGGCGCAGTAGGATGGCAGGCAAGAGGACCCGCCCATGACGCCACTCACCCAGTTGCAAGTGTTCAACGCCATGCATGCCTCGCCCAATGCCAGGCTGGAGCTGAGCGCGCACCTGGGCGACGGACCGGCG                                                                                                                                                                         >  2:213073/1‑210                                     GCACAAACTTGCGCTTTTCTTGCGCCGGTAGCTGTCACTCGATCCAGGGCGCAGTAGGATGGCAGGCAAGAGGACCCGCCCATGACGCCACTCACCCAGTTGCAAGTGTTCAACGCCATGCATGCCTCGCCCAATGCCAGGCTGGAGCTGAGCGCGCACCTGGGCGACGCACTGG                                                                                                                                                                           >  2:1233192/1‑175                                                                                 CAGGGCGCAGTAGGATGGCAGGCAAGAGGACCCGCCCATGACGCCACTCACCCAGTTGCAAGTGTTCAACGCCATGCATGCCTCGCCCAATGCCAGGCTGGAGCTGAGCGCGCACCTGGGCGACGGACTGGCGGCGG                                                                                                                                                                     <  2:1295537/137‑1                                                                                  AGGGCGCAGTAGGATGGCAGGCAAGAGGACCCGCCCATGACGCCACTCACCCAGTTGCAAGTGTTCAACGCCATGCATGCCTCGCCCAATGCCAGGCTGGAGCTGAGCGCGCACCTGGGCGACGGACTGGCGGCGGAAGGTGCCGGTGCCGT                                                                                                                                                     <  1:451998/152‑1                                                                                    GGCGCAGTAGGATGGCACGCAAGAGGACCCGCCCATGACGCCACTCACCCAGTTGCAAGTGTTCAACGCCATGCAGGCCTCGCCCAATGCCAGGCTGGAGCTGAGCGCGCACGTGGCCGACGGACTGGAGGCGGAAGGTGCCGGTGCCGTCGGCGATGTAGCACGACAGGGTGTGATCGCT                                                                                                                      <  2:761227/181‑1                                                                                                             GACCCGCCCATGACGCTACTCACCCAGTTGCAAGTGTTCAACGCCATGCATGCCTCGCCCAATGCCAGGCTGGAGCTGAGCGCGCACCTGGGCGACGGACTGGCGGCGGAAGGTGCCGGTGCCGTCGGCGATGTAGCACGACAAGGTGTGATGGCTAGGCGCCTGGTAGTCGCG                                                                                                    <  2:95627/174‑1                                                                                                                                          GCAAGTGTTCAACGCCATGCATGCCTCGCCCAATGCCAGGCTGGAGCTGAGCGCGCACCTGGGCGACGGACTGGCGGCGGAAGGTGCCGGTGCCGTCGGCGATGTAGCACGACAAGGTGTGATGGCTAGGCGCCTGGTAGTCGCGCGCATCGTCACGGTTGCTCCACAACGC                                                                         <  2:1109806/172‑1                                                                                                                                          GCAAGTGTTCAACGCCATGCATGCCTCGCCCAATGCCAGGCTGGAGCTGAGCGCGCACCTGGGCGACGGACTGGCGGCGGAAGGTGCCGGTGCCGTCGGCGATGTAGCACGACAAGGTGTGATGGCTAGGCGCCTGGTAGTCGCGCGCATCGTCACGGTTGCTCCACAACGC                                                                         >  1:1109809/1‑172                                                                                                                                             AGTGTTCAACGCCATGCATGCCTCGCCCAATGCCAGGCTGGAGCTGAGCGCGCACCTGGGCGACGGACTGGCGGCGGAAGGTGCCGGTGCCGTCGGCGATGTAGCACGACAAGGTGTGATGG                                                                                                                        >  1:440651/1‑122                                                                                                                                                    AACGCCATGCATGCCTCGCCCAATGCCAGGCTGGAGCTGAGCGCGCACCTGGGCGACGGACGCGCGGCG                                                                                                                                                                      >  2:169868/1‑69                                                                                                                                                                   TCGCCCAATGCCAGGCTGGAGCTGAGCGCGCACCTGGGCGACCGACTGGCGGCGGAAGGTGC                                                                                                                                                              >  1:1328332/1‑62                                                                                                                                                                        CAATGCCAGGCTGGAGCTGAGCGCGCACCTGGGCGACGGACTGGCGGCGGAAGGTGCCGGTGCCGTCGGCGATGTAGCACTACAAGGTGTGATGGCTAGGCGCCTGGTAGTCGCGCGCATCGTCACGGTTGCTCCACAACGCCGCCGCCAGTCCGTCGCCCAGGTGCGCGCTCAG                                        >  1:1195315/1‑175                                                                                                                                                                        CAATGCCAGGCTGGAGCTGAGCGCGCACCTGGGCGACGGACTGGCGGCGGAAGGTGCCGGTGCCGTCGGCGATGTAGCACGACAAGGTGTGATGGCTAGGCGCCTGGTAGTCGCGCGCATCGTCACGGTTGCTCCACAACGCCGCCGCCAGTCCGTCGCCCAGGTGCGCGCTCAGCTCCAGCCTGGCATTGGGCGAGGCATGCATGGCGTTGA  >  1:1412171/1‑213                                                                                                                                                                                  CTGGAGCTGAGCGCGCACCTGGGCGACGGACTGGCGGCGGAAGGTGCCGGTGCCGTCGGCGATGTAGCACGACAAGGTGTGATGGCTAGGCGCCTGGTAGTCGCGCGCATCGTCACGGTTGCTCCACAACGCCGCCGACAGTCAGTCGCCCAGGTGCGCG                                             >  1:2989/1‑160                                                                                                                                                                                   TGGAGCTGAGCGCGCACCTGGGCGACGGACTGGCGGCGGAAGGTGCCGGGGCCGTCGGCGATGTAGCACGACAAGGTGTGATGGCTAGGCGCCGGG                                                                                                            >  1:131342/1‑96                                                                                                                                                                                                                     GGCGGAAGGTGCCGGTGCCGTCGGCGATGTAGCACGACAAGGTGTGATGGCTAGGCGCCTGGTAGTCGCGCGCATCGTCACGGTTGCTCCACAACGCCGCCGCCAGTCCGTCGCCCAGGTGCGCGCTCAGCTCCAGCCTGGCATTGGGCGAGGCATGCATG         <  2:1110070/161‑1                                                                                                                                                                                                                      GCGGAAGGTGCCGGTGCCGTCGGCGATGTAGCACGACAAGGTGTGATGGCTAGGCGCCTGGTAGTCGCGCGCATCGTCACGGTTGCTCCACAACGCCGCCGCCCGTCCGTCGCCCCGGTGCGC                                              >  2:15387/1‑123                                                                                                                                                                                                                                                                                                                                                                                              ATCACCAGTGTTCTTGCGATCGGCCTCTGGCTGCTTGCACAAACTTGCGCTTTTCTTGCGCCGGTAGCTGTCACTCGATCCAGGGCGCAGTAGGATGGCAGGCAAGAGGACCCGCCCATGACGCCACTCACCCAGTTGCAAGTGTTCAACGCCATGCATGCCTCGCCCAATGCCAGGCTGGAGCTGAGCGCGCACCTGGGCGACGGACTGGCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5225646‑5225862 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcggcggAAGGTGCCGGTGCCGTCGGCGATGTAGCACGACAAGGTGTGATGGCTAGGCGCCTGGTAGTCGCGCGCATCGTCACGGTTGCTCCACAACGCCGCCGCCAGTCCGTCGCCCAGGTGCGCGCTCAGCTCCAGCCTGGCATTGGGCGAGGCATGCATGGCGTTGA  <  AE015451/5225953‑5225791

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.