New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	5463139 =	61 (0.710)	3 (0.040)	3/334	NT	5.3%	coding (211/939 nt)	PP_4799	putative Muramoyltetrapeptide carboxypeptidase
	?	AE015451	5463189 =	49 (0.610)					coding (161/939 nt)	PP_4799	putative Muramoyltetrapeptide carboxypeptidase

GTTTGTGTCCAATGCGCTGCAAGGAGCCGCGATGTACTGCGCCAAAACCTTCCAACCCACCCTGCCAGCCGCGCTGCCGGCCAACGCATGTTTTGCCATTGTCGCCCCGGCGGGCGCGGCGCGGCTTGATGCGCACAAGGTTAGCCAGTGGTTCGTTGACCGCGGCTACCGTTGCCGTATCTACCCGGGTGCCCTGCAGGCGCAGGGCTACCTGGCGGGGCCGGACCAGCAGCGCCTGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5463380‑5463139 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcctgcaggGCACCCGGGTAGATACGGCAACGGTAGCCGCGGTCAACGAACCACTGGCTAACCTTGTGCGCATCAAGCCGCGCCGCGCCCGCCGGGGCGACAATGGCAAAACATGCGTTGGCCGGCAGCGCGGCTGGCAGGGTGGGTTGGAAGGTTTTGGCGCAGTACATCGCGGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATG  >  AE015451/5463189‑5463393                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GTTTGTGTCCAATGCGCTGCAAGGAGCCGCGATGTACTGCGCCAAAACCTTCCAACCCACCCTGCCAGCCGCGCTGCCGGCCAACGCATGTTTTGCCATTGTCGCCCCGGCGGGCGCGGCGCGGCTTGATGCGCACAAGGTTAGCCAGTGGTTCGTTGACCGCGGCTACCGTTGCCGTATCTACCCGGGTGCCCTGCAGGCGCAGGGCTACCTGGCGGGGCCGGACCAGCAGCGCC                                                                                                                                                                                                                     <  1:889518/236‑1        TCCAATGCGCTGCAAGGAGCCGCGATGTACTGCGCCAAAACCTTCCAACCCCCCCTGCCAGCCGCGCTGCCGGCCAACGCATGTTTTGCCATTGTCGCCCCGGCGGGCGCGGCGCGGCTTGATGCGCACAAGGTTAGCCAGTGGTTCGTTGACCGCGGCTACCGTTGCCGTATCTACCCGGGTGCCCTGCAGGCGCAGGGCTACCTGGCGGGGCCGGACCAGCAGCGCCTGCAGG                                                                                                                                                                                                               <  1:195588/235‑1          CAATGCGCTGCAAGGAGCCGCGATGTACTGCGCCAAAACCTTCCAACCCACCCTGCCAGCCGCGCTGCCGGCCAACGCATGTTTTGCCATTGTCGCCCCGGCGGGCGCGGCGCGGCTTGATGCGCACAAGGTTAGCCAGTGGTTCGTTGACCGCGGCTACCGTTGCCGTATCTACCCGGGTGCCCTGCAGGCGCAGGGCTACCTGGCGGGGCCGGACCAGCAGCGCCTGCAGGG                                                                                                                                                                                                              <  1:960264/234‑1                  TGCAAGGAGCCGCGATGTACTGCGCCAAAACCTTCCAACCCACCCTGCCAGCCGCGCTGCCGGCCAACGCATGTTTTGCCATTGTCGCCCCGGCGGGCGCGGCGCGGCTTGATGCGCACAAGGTTAGCCAGTGGTTCGTTGACCGCGGCTACCGTTGCCGTATCTACCCGGGTGCCCTGCAGGCGCAGGGCTACCTGGCGGGGCCGGACCAGCAGCGCCTGCA                                                                                                                                                                                                                 <  2:1294536/223‑1                                  GTACTGCGCCAAAACCTTCCAACCCACCCTGCCAGCCGCGCTGCCGGCCAACGCATGTTTTGCCATTGTCGCCCCGGCGGGCGCGGCGCGGCTTGATGCGCACAAGGTTAGCCAGTGGTTCGTTGACCGCGGCTACCGTTGCCGTATCTACCCGGGTGCCCTGCAGGCGCAGGGCTACCTGGCGGGGCCGGACCAGCAGCGCCTG                                                                                                                                                                                                                   <  2:856560/205‑1                                                                   AGCCGCGCTGCCGGCCAACGCATGTTTTGCCATTGTCGCCCCGGCGGGCGCGGCGCGGCTTGATGCGCACAAGGTTAGCCAGTGGTTCGTTGACCGCGGCTACCGTTGCCGTATCTACCCGGGTGCCCTGCAGGCGCAGGGCTACCTGGCGGGGCCGGACCAGCAGCGCCTG                                                                                                                                                                                                                   <  1:406132/172‑1                                                                                                                GGGCGCGGCGCGGCTTGATGCGCACAAGGTTAGCCAGTGGTTCGTTGACCGCGGCTACCGTTGCCGTATCTACCCGGGTGCCCTGCAGGCGCAGGGCTACCTGGCGGGGCCGGACCAGCAGCGC                                                                                                                                                                                                                      <  1:205915/124‑1                                                                                                                GGGCGCGGCGCGGCTTGATGCGCACAAGGTTAGCCAGTGGTTCGTTGACCGCGGCTACCGTTGCCGTATCTACCCGGGTGCCCTGCAGGCGCAGGGCTACCTGGCGGGGCCGGACCAGCAGCGC                                                                                                                                                                                                                      >  2:205914/1‑124                                                                                                                                         AAGGTTAGCCAGTGGTTCGTTAGCCGCGGCTACCGTTGCCGTATCTACCCGGGTGCCCTGCAGGCGCAGGGCTACCTGGCGGGGCCGGACCAGCAGCGCCTGCAGGGCACCCGGGTAGATACGGCAACGGTAGCCGCGGT                                                                                                                                                                             <  2:806174/140‑1                                                                                                                                                                                                   TGCAGGCGCAGGGCTACCTGGCGGGGCCGGACCAGCAGCGCCTGCAGGGCACCCGGGTAGATACGGCAACGGTAGCCGCGGTCAACGAACCACTGGCTAACCTTGTGCGCATCAAGCCGCGCCGCGCCCGCCGGGGCG                                                                                                                     >  1:264067/1‑138                                                                                                                                                                                                   TGCAGGCGCAGGGCTACCTGGCGGGGCCGGACCAGCAGCGCCTGCAGGGCACCCGGGTAGATACGGCAACGGTAGCCGCGGTCAACGAACCACTGGCTAACCTTGTGCGCATCAAGCCGCGCCGCGCCCGCCGGGGCG                                                                                                                     <  2:264065/138‑1                                                                                                                                                                                                                                            CTGCAGGGCACCCGGGTAGATACGGCAACGGTAGCCGCGGTCAACGAACCACTGGCTAACCTTGTGCGCATCAAGCCGCGCCGCGCCCGCCGGGGCGACAATGGCAAAACATGCGTTGGCCGGCAGCGCGGCTGGCAGGGTGGGGTGGAAGGTTTTGGCGCAGTACATCGCGGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATG  >  1:403802/1‑212                                                                                                                                                                                                                                             TGCAGGGCACCCGGGTAGATACGGCAACGGTAGCCGCGGTCAACGAACCACTGGCTAACCTTGTGCGCATCAAGCCGCGCCGCGCCCGCCGGGGCGACAATGGCAAAACATGCGTTGGCCGGCAGCGCGGCTGGCAGGGTGGGTTGGAAGGTTTTGGCGCAGTACATCGCGGCTCCTTGCAGCGCATTGG                       >  2:635166/1‑190                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GTTTGTGTCCAATGCGCTGCAAGGAGCCGCGATGTACTGCGCCAAAACCTTCCAACCCACCCTGCCAGCCGCGCTGCCGGCCAACGCATGTTTTGCCATTGTCGCCCCGGCGGGCGCGGCGCGGCTTGATGCGCACAAGGTTAGCCAGTGGTTCGTTGACCGCGGCTACCGTTGCCGTATCTACCCGGGTGCCCTGCAGGCGCAGGGCTACCTGGCGGGGCCGGACCAGCAGCGCCTGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5463380‑5463139 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcctgcaggGCACCCGGGTAGATACGGCAACGGTAGCCGCGGTCAACGAACCACTGGCTAACCTTGTGCGCATCAAGCCGCGCCGCGCCCGCCGGGGCGACAATGGCAAAACATGCGTTGGCCGGCAGCGCGGCTGGCAGGGTGGGTTGGAAGGTTTTGGCGCAGTACATCGCGGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATG  >  AE015451/5463189‑5463393

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.