New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	5566266 =	54 (0.630)	8 (0.100)	5/338	NT	13.2%	coding (1220/1899 nt)	mutL	DNA mismatch repair protein MutL
	?	AE015451	5566322 =	54 (0.660)					coding (1164/1899 nt)	mutL	DNA mismatch repair protein MutL

TGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCCCCGCAACAGTCGTTTTCCAATGGTGGCAGCGGCGCCGGTTACCAGTATCAATACACCCCACGTCCCTCGCAGCCGCTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5566434‑5566266 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgctgccACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTACTTCAT  >  AE015451/5566322‑5566554                                                                                                                                                                                                                                                                                                                                                                                                                    cGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCCCCGCAACAGTCGTTTTCCAATGGTGGCAGCGGCGCCGGTTACCAGTATCAATACACCCCACGTCCCTCGCAGCCGCTGCCACCATTGGAAAA                                                                                                                                                                                                                               <  2:873424/180‑1   GTTCGCCCCCCCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCCCCGCAACAGTCGTTTTCCAATGGTGGCAGCGGCGCCGGTTACCAGTATCAATACACCCCACGTCCCTCGCAGCCGCTGCCACCATTGGAAAACGACTGTT                                                                                                                                                                                                                       <  1:282650/187‑1            ACCGGCCTGCTGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCCCCGCAACAGTCGTTTTCCAATGGTGGCAGCGGCGCCGGTTACCAGTATCAATACACCCCACGTCCCTCGCAGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAG                                                                                                                                                                                       <  1:568772/210‑1                       GGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCCCCGCAACAGTCGTTTTCCAATGGTGGCAGCGGCGCCGGTTACCAGTATCAATACACCCCGCGTCCCTCGCAGCCGCTGCCACCATTGGAAAA                                                                                                                                                                                                                               <  2:1457540/159‑1                                 TTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCCCCGCAACAGTCGTTTTCCAATGGTGGCAGCGGCGCCGGTTACCAGTATCAATACACCCCACGTCCCTCGCAGCCGCTGCCACCATTGGAAAACGACTGTT                                                                                                                                                                                                                       <  1:381270/157‑1                                                      CGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCCCCGCAACAGTCGTTTTCCAATGGTGGCAGCGGCGCCGGTTACCAGTATCAATACACCCCACGTCCCTCGCAGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCA                                                                                                                                                                                   <  1:439588/172‑1                                                                CGCCGGTGCTTGAACAGCCTCGAGCCCCGCAACAGTCGTTTTCCAATGGTGGCAGCGGCGCCGGTTACCAGTATCAATACACCCCACGTCCCTCGCAGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCC                                                                                                                                                                                    <  1:1036211/161‑1                                                                            cACAGCCTCGCGCCCCGCAACAGTCGTTTTCCCATGGTGGCAGCGGCGCCGGTTACCAGTATCCATACACCCCACGTCCCTCGCAGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCC                                                                                                                                                                                    <  1:148855/148‑1                                                                                                                                                                     CTGCCTCCATTGGAAACCGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCTCCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAG                                                                  <  1:304657/174‑1                                                                                                                                                                     CTGCCACCATTGGAAAGCGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGT                                                           <  2:596124/181‑1                                                                                                                                                                        CCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTACTTCAT  <  1:454545/235‑1                                                                                                                                                                                                                                                                                                                                                                                                                    TGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCCCCGCAACAGTCGTTTTCCAATGGTGGCAGCGGCGCCGGTTACCAGTATCAATACACCCCACGTCCCTCGCAGCCGCTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5566434‑5566266 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgctgccACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTACTTCAT  >  AE015451/5566322‑5566554

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.