New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5632227	89 (1.030)	4 (0.050)	4/330	NT	5.6%	coding (1757/3954 nt)	putA	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase
	?	AE015451	= 5632372	52 (0.650)					coding (1902/3954 nt)	putA	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase

GCCAGTACGAGTTCCAGTGCCTGCACGGCATGGGCGAACCGCTGTACGAGCAAGTGGTCGGCAAGATTGCCGATGGCAAGCTGAACCGCCCGTGCCGCGTGTATGCACCGGTCGGCACCCATGAAACGCTGCTGGCCTACCTGGTGCGCCGCCTGCTGGAAAACGGCGCGAACACCTCGTTCGTCAACCGCATTGCCGACCACTCGATTTCCATCCAGGAACTGGTCGCCGACCCGGTGGCCAGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5631981‑5632227 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtggccagcatGGCGCAGGACAGCGACGCCAGGCGGTGTTCATTGGCCATGTCGATGCCGGCCGAGTTGGCCCGTTCGGTGCCATACAGGTCGCGCGGCAGGGGAATGCGTGGGTGCGGCAGGCCGATACTGCCTTCCTGGGTACCCATGCGCTCGATGCTGGCCACCGGGTCGGCGACCAGTTCCTGGATGGAAATCGAGTGGTCGGCAATGCGGTTGACGAACGAGGTGTTCGCGCC  <  AE015451/5632372‑5632145                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GCCAGTACGAGTTCCAGTGCCTGCACGGCATGGGCGAACCGCTGTACGAGCAAGTGGTCGGCAAGATTGCCGATGGCAAGCTGAACCGCCCGTGCCGCGTGTATGCACCGGTCGGCACCCATGAAACGCTGCTGGCCTACCTGGTGCGCCGCCTGCTGGAAAACGGCGCGAACACCTCGTTCGTCAACCGCATTGCCGACCACTCGATTTCCATCCAGGAACTGGTCGCCGACCCG                                                                                                                                                                                                                                                 >  1:1315794/1‑236 GCCAGTACGAGTTCCAGTGCCTGCACGGCATGGGCGAACCGCTGTACGAGCAAGTGGTCGGCAAGATTGCCGATGGCAAGCTGAACCGCCCGTGCCGCGTGTATGCACCGGTCGGCACCCATGAAACGCTGCTGGCCTACCTGGTGCGCCGCCTGCTGGAAAACGGCGCGAACACCTCGTTCGTCAACCGCATTGCCGACCACTCGATTTCCATCCAGGAACTGGTCGCCGACCCG                                                                                                                                                                                                                                                 >  1:333146/1‑236    AGTACGAGTTCCAGTGCCTGCACGGCATGGGCGAACCGCTGTACGAGCAAGTGGTCGGCAAGATTGCCGATGGCAAGCTGAACCGCCCGTGCCGCGTGTATGCACCGGTCGGCACCCATGAAACGCTGCTGGCCTACCTGGTGCGCCGCCTGCTGGAAAACGGCGCGAACACCTCGTTCGTCAACCGCATTGCCGACCACTCGATTTCCATCCAGGAACTGGTCGCCGACCCGGTG                                                                                                                                                                                                                                              >  1:1166281/1‑236              CCAGTGCCTGCACGGCATGGGCGAACCGCTGTACGAGCAAGTGGTCGGCAAGATTGCCGATGGCAAGCTGAACCGCCCGTGCCGCGTGTATGCACCGGTCGGCACCCATGAAACGCTGCTGGCCTACCTGGTGCGCCGCCTGCTGGAAAACGGCGCGAACACCTCGTTCGTCAACCGCATTGCCGACCACTCGATTTCCATCCAGGAACTGGTCGCCGACCCGG                                                                                                                                                                                                                                                >  1:153204/1‑224                       GCACGGCATGGGCGAACCGCTGTACGAGCAAGTGGTCGGCAAGATTGCCGATGGCAAGCTGAACCGCCCGTGCCGCGTGTATGCACCGGTCGGCACCCATGAAACGCTGCTGGCCTACCTGGTGCGCCGCCTGCTGGAAAACGGCGCGAACACCTCGTTCGTCAACCGCATTGCCGACCACTCGATTTCCATCCAGGAACTGGTCGCCGACCCGGTGGCCAG                                                                                                                                                                                                                                         >  2:1328251/1‑222                                          CTGTACGAGCAAGTGGTCGGCAAGATTGCCGATGGCAAGCTGAACCGCCCGTGCCGCGTGTATGCACCGGTCGGCACCCATGAAACGCTGCTGGCCTACCTGGTGCGCCGCCTGCTGGAAAACGGCGCGAACACCTCGTTCGTCAACCGCATTGCCGACCACTCGATTTCCATCCAGGAACTGGTCGCCGACCCGGCGGCCAG                                                                                                                                                                                                                                         >  2:272624/1‑203                                                                              AAGCTGAACCGCCCGTGCCGCGTGTATGCACCGGTCGGCACCCATGAAACGCTGCTGGCCTACCTGGTGCGCCGCCTGCTGGAAAACGGCGCGAACACCTCGTTCGTCAACCGCATTGCCGACCACTCGATTTCCATCCAGGAACTGGCCGCCCACCCG                                                                                                                                                                                                                                                 >  2:814898/1‑159                                                                                                       ATGCACCGGTCGGCACCCATGAAACGCTGCTGGCCTACCTGGTGCGCCGCCTGCTGGCAAACGGCGCGAACACCTCGTTCGTCAACCGCATTGCCGACCACTCGATTTCCATACAGGAACTGGTCGCCGACCCGGTCGCCAGCA                                                                                                                                                                                                                                       >  2:504987/1‑144                                                                                                                  GGCACCCATGAAACGCTGCTGGCCTACCTGGTGCGCCGCCTGCTGGAAAACGGCGCGAACACCTCGTTCGTCAACCGCATTGCCGACCACTCGATTTCCATCCAGGAACTGGTCGCCGACCCGGTGGCCAGCATGGCGCAGGACAGCGACGCCAGGCGGTGTTCATTGGCCATGTCGATGCCGGCCGAGTTGGCCCGTTCGGTGCCATACAGGTCGCGCGGCAGGGGAATGCGTGG                                                                                                                                >  1:1132780/1‑236                                                                                                                            AAACGCTGCTGGCCTACCTGGTGCGCCGCCTGCTGGAAAACGGCGCGAACACCTCGTTCGTCAACCGCATTGCCGACCACTCGATTTCCATCCAGGAACTGGTCGCCGACCCGGTGGCCAGCATGGCGCAGGACAGCGACGCCAGGCGGTGTTCATTGGCCATGTCGATGCCGGCCGAGTTGGCCC                                                                                                                                                                        <  1:1491162/186‑1                                                                                                                                                                             CACCTCGTTCGTCAACCGCATTGCCGACCACTCGATTTCCATCCAGGAACTGGTCGCCGACCCGGTGGCCAGCATGGCGCAGGACAGCGACGCCAGGCGGTGTTCATTGGCCATGTCGATGCCGGCCGAGTTGGCCCGTTCGGTGCCATACAGGTCGCGCGGCAGGGGAATGCGTGGGTGCGGCAGGCCGATACTGCCTTCCTGGGTACCCATGCGCTCGATGCTG                                                                               <  2:1132777/226‑1                                                                                                                                                                                                                         AGGAACTGGTCGCCGACCCGGTGGCCAGCATGGCGCAGGACAGCGACGCCAGGCGGTGTTCATTGGCCATGTCGATGCCGGCCGAGTTGGCCCGTTCGGTGCCATACAGGTCGCGCGGCAGGGGAATGCGTGGGTGCGGCAGGCAGATACTGCCTTCCTGGGTACCCATGCGCTCGATGCTGG                                                                              >  1:785362/1‑183                                                                                                                                                                                                                                           CGGTGGCCAGCATGGCGCAGGACAGCGACGCCAGGCGGTGTTCATTGGCCATGTCGATGCCGGCCGAGTTGGCCCGTTCGGTGCCATACAGGTCGCGCGGCAGGGGAATGCGTGGGTGCGGCAGGCCGATACTGCCTTCCTGGGTACCCATGCGCTCGATGCTGGCCACCGGGTCGGCGACCAGTTCCTGGATGGAAATCGAGTGGTCGGCAATGCGGTTGACGAACGAGGTGTTC       >  1:913780/1‑236                                                                                                                                                                                                                                              TGGCCAGCATGGCGCAGGACAGCGACGCCAGGCGGTGTTCATTGGCCATGTCGATGCCGGCCGAGTTGGCCCGTTCGGTGCCATACAGGTCGCGCGGCAGGGGAATGCGTGGGTGCGGCAGGCCGATA                                                                                                                >  2:1211054/1‑128                                                                                                                                                                                                                                              TGGCCAGCATGGCGCAGGACAGCGACGCCAGGCGGTGTTCATTGGCCATGTCGATGCCGGCCGAGTTGGCCCGTTCGGTGCCATACAGGTCGCGCGGCAGGGGAATGCGTGGGTGCGGCAGGCCGATA                                                                                                                <  1:1211057/128‑1                                                                                                                                                                                                                                                GCCAGCATGGCGCAGGACAGCGACGCCAGGCGGTGTTCATTGGCCATGTCGATGCCGGCCGAGTTGGCCCGTTCGGTGCCATACAGGTCGCGCGGCAGGGGAATGCGTGGGTGCGGCAGGCCGA                                                                                                                  >  2:454541/1‑124                                                                                                                                                                                                                                                 CCAGCATGGCGCAGGACAGCGACGCCAGGCGGTGTTCATTGGCCATGTCGATGCCGGCCGAGTTGGCCCGTTCGGTGCCATACAGGTCGCGCGGCAGGGGAATGCGTGGGTGCGGCAGGCCGATACTGCCTTCCTGGGTACCCATGCGCTCGATGCTGGCCACCGGGTCGGGGACCAGTTCCTGGTTGGAAATCGAGTGGTCGGC                                >  1:307753/1‑205                                                                                                                                                                                                                                                 CCAGCATGGCGCAGGACAGCGACGCCAGGCGGTGTTCATTGGCCATGTCGATGCCGGCCGAGTTGGCCCGTTCGGTGCCATACAGGTCGCGCGGCAGGGGAATGCGTGGGTGCGGCAGGCCGATACTGCCTTCCTGGGTACCCATGCGCTCGATGCTGGCCACCGGGTCGGCGACCAGTTCCTGGATGGAAATCGAGTGGTCGGCAATGCGGTTGACGAACGAGGTGTTCGCGCC  >  1:50592/1‑235                                                                                                                                                                                                                                                 CCAGCATGGCGCAGGACAGCGACGCCAGGCGGTGTTCATTGGCCATGTCGATGCCGGCCGAGTTGGCCCGTTCGGTGCCATACAGGTCGCGCGGCAGGGGAATGCGTGGGTGCGGCAGGCCGATACTGCCTTCCTGGGTACCCATGCGCTCGATGCTGGCCACCGGGTCGGCGACCAGTTCCTGGATGGAAATCGAGTGGTCGGCAATGCGGTTGACGAACGAGGTGTTCGCGCC  >  1:1174347/1‑235                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GCCAGTACGAGTTCCAGTGCCTGCACGGCATGGGCGAACCGCTGTACGAGCAAGTGGTCGGCAAGATTGCCGATGGCAAGCTGAACCGCCCGTGCCGCGTGTATGCACCGGTCGGCACCCATGAAACGCTGCTGGCCTACCTGGTGCGCCGCCTGCTGGAAAACGGCGCGAACACCTCGTTCGTCAACCGCATTGCCGACCACTCGATTTCCATCCAGGAACTGGTCGCCGACCCGGTGGCCAGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5631981‑5632227 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtggccagcatGGCGCAGGACAGCGACGCCAGGCGGTGTTCATTGGCCATGTCGATGCCGGCCGAGTTGGCCCGTTCGGTGCCATACAGGTCGCGCGGCAGGGGAATGCGTGGGTGCGGCAGGCCGATACTGCCTTCCTGGGTACCCATGCGCTCGATGCTGGCCACCGGGTCGGCGACCAGTTCCTGGATGGAAATCGAGTGGTCGGCAATGCGGTTGACGAACGAGGTGTTCGCGCC  <  AE015451/5632372‑5632145

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.