New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5681387	14 (0.160)	5 (0.060) +G	4/354	NT	41.8%	intergenic (‑105/+99)	PP_4986/PP_4987	Channel protein, hemolysin III family/putative Chemotaxis protein
	?	AE015451	= 5681415	0 (0.000)					intergenic (‑133/+71)	PP_4986/PP_4987	Channel protein, hemolysin III family/putative Chemotaxis protein

ATGGCACCAATAGCAGCGAGGACGGCACCGACCAGGTGGGTCCAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5681212‑5681387 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCG  <  AE015451/5681415‑5681352                                                                                                                                                                                 |                                                                 ATGGCACCAATAGCAGCGAGGACGGCACCGACCAGGTGGGTCCAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGGGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGG                                  <  2:1031461/209‑1                                                                  ATACATGCAAACACAGCCCTCCTGAGGTGGGCTGGGTTCCTGTGGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGG                                  <  2:620166/144‑1                                                                                                         CTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTTCGCGACACAA       >  1:431250/1‑132                                                                                                         CTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTTCGCGACACAA       <  2:431248/132‑1                                                                                                                 ATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGATAGGGCTGCGCCGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCG  >  2:1511057/1‑129                                                                                                                                                                                 |                                                                 ATGGCACCAATAGCAGCGAGGACGGCACCGACCAGGTGGGTCCAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5681212‑5681387 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCG  <  AE015451/5681415‑5681352

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.