| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | 1347037 = | 81 (1.180) | 3 (0.050) | 3/292 | NT | 5.0% | intergenic (‑145/+259) | udh/galP‑I | uronate dehydrogenase/porin‑like protein |
| ? | AE015451 | 1347141 = | 44 (0.740) | intergenic (‑249/+155) | udh/galP‑I | uronate dehydrogenase/porin‑like protein | |||||
CAAGATCTGCGGGTTTACCCGCGAATACGGTGGTGGCGGCAACGGCGAACGGCGGGTGAAAACTGGCCAGCAGGGCCGGCCCATTCGCGGGTAAACCCGCTCCTACACAGCGGCCTGCGCCCAACCTCCGATGTGTGTCCACCATTGATCAGGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAACGGCGGGTGGAAATTGGCCAGCAGGCCTGGCCCTTTCGCGGGTAAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/1347294‑1347037‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggtaaacccgctcctacACCTGATCAATGGTGGACACACATCGGAGGTTGGGCGCAGGCCGCTGTGTAGGAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGCGGATAGTTGAAGATCAACCGGTTCTCATCGAACTCGTTATT > AE015451/1347141‑1347352 CAAGATCTGCGGGTTTACCCGCGAATACGGTGGTGGCGGCAACGGCGAACGGCGGGTGAAAACTGGCCAGCAGGGCCGGCCCATTCGCGGGTAAACCCGCTCCTACACAGCGGCCTGCGCCCAACCTCCGATGTGTGTCCACCATTGATCAGGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAACGGCGGGTGGAAATTGGCCAGCAGGCCTGGCCCTT > 1:619076/1‑236 CTGCGGGTTTACCCGCGAATACGGTGGTGGCGGCAACGGCGAACGGCGGGTGAAAACTGGCCAGCAGGGCCGGCCCATTCGCGGGTAAACCCGCTCCTACACAGCGGCCTGCGCCCAACCTCCGATGTGTGTCCACCATTGATCAGGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAACGGCGGGTGGAAATTGGCCAGCAGGCCTGGCCCTTTCGCGG > 1:1159689/1‑236 GGTGGTGGCGGCAACGGCGAACGGCGGGTGAAAACTGGCCAGCAGGGCCGGCCCATTCGCGGGTAAACCCGCTCCTACACAGCGGCCTGCGCCCAACCTCCGATGTGTGTCCACCATTGATCAGGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAACGGCGGGTGGAAATTGGCCAGCAGGCCTGGCCCTTTCGCGGGTAAA < 2:629926/219‑1 GGCGGGTGAAAACTGGCCAGCAGGGCCGGCCCATTCGCGGGTAACCCCGCTCCTACACAGCGGCCTGCGCCCAACCTCCGATGTGTGTCCACCATTGATCAGGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAACGGCGGGTGGAAATTGGCCAGCAGGCCTGGCCCTTTCGCGGGTAAA < 1:281392/197‑1 AGCAGGGCCGGCCCATTCGCGGGTAAACCCGCTCCTACACAGCGGCCTGCGCCCAACCTCCGATGTGTGTCCACCATTGATCAGGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAACGGCGGGTGGAAATTGGCCAGCAGGCCTGGCCCTTTCGCGGGTAAACCCGCT > 1:23825/1‑185 GCCCATTCGCGGGTAAACCCGCTCCTACACAGCGGCCTGCGCCCAACCTCCGATGTGTGTCCACCATTGATCAGGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAACGGCGGGTGGAAATTGGCCAGCAGGCCTGGCCCTTTCGCGGGTAAACCCGCTC > 2:560577/1‑176 ACCTCCGATGTGTGTCCACCATTGACCAGGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAACGGCGGGTGGAAATTGGCCAGCAGGCCTGGCCCTTTCGCGGGTAAA < 2:839037/124‑1 ATGTGTGTCCACCATTGATCAGGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAACGGCGGGTGGAAATTGGCCAGCAGGCCTGGCCCTTTCGCG > 1:1060757/1‑111 GTCCACCATTGATCAGGTGTAGGAGCGGGTTTTCCCGCGAATACGGGGGCGGCGGCAACGGTGAACGGCGGGTGGAAATTGGCCAGCAGGCCTGGCCCTTTCGCGGGTAAACCCGCGCCTACACCTGATCAATG < 2:624037/134‑1 ATTGATCAGGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAACGGCGGGTGGAAATTGGCCAGCAGCCCTGGCCCTTTCGCGGGTAAACC > 2:824273/1‑106 GATCAGGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAACGGCGGGTGGAAATTGGCCAGCAGGCCTGGCCCTTTCGCGGGTAA < 2:1012282/100‑1 gGCGGGTTCACCCGCGAATACGGTGGCGGCGGCAACGGTGAACGGCGGGTGGAAATTGGCCAGCAGGCCTGGCCCTTTCGCGGGTAAACCCGCTCCTACACCTGATCAATGGTGGACACACATCGGAGGTTGGGCGCAGGCCGCT < 2:1217925/144‑1 ggGAATACGGTGGCGGCGGCAACGGTGAACGGCGGGTGGAAATGGGCCAGCAGGCCTGGCCCTTCCGCGGGTAAACCCGCTCCTACACCTGATCAATGGTGGACACACATCGGA < 1:1235985/112‑1 GCGGGTAAACCCGCTCCTACA > 2:211077/1‑21 CCGCTCCTACACCTGATCAATGGTGGACACACATCGGAGGTTGGGCGCAGGCCGCTGTGTAGGAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGCGGATAGTTGAAGATCAACCGGTTCTCATCGAACTCGTTATT < 1:12816/222‑1 CCGCTCCTACACCTGATCAATGGTGG < 2:65640/26‑1 TACACCTGATCAATGGTGGACACACATCGGAGGTTGGGCGCAGGCCGCTGTGTAGGAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGC > 1:715259/1‑174 TACACCTGATCAATGGTGGACACACATCGGAGGTTGGGCGCAGGCCGCTGTGTAGGAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGC < 2:715256/174‑1 CAAGATCTGCGGGTTTACCCGCGAATACGGTGGTGGCGGCAACGGCGAACGGCGGGTGAAAACTGGCCAGCAGGGCCGGCCCATTCGCGGGTAAACCCGCTCCTACACAGCGGCCTGCGCCCAACCTCCGATGTGTGTCCACCATTGATCAGGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAACGGCGGGTGGAAATTGGCCAGCAGGCCTGGCCCTTTCGCGGGTAAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/1347294‑1347037‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggtaaacccgctcctacACCTGATCAATGGTGGACACACATCGGAGGTTGGGCGCAGGCCGCTGTGTAGGAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGCGGATAGTTGAAGATCAACCGGTTCTCATCGAACTCGTTATT > AE015451/1347141‑1347352 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |