New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	1360758 =	78 (1.140)	5 (0.080)	5/324	NT	6.1%	intergenic (+18/‑179)	oprH/phoP	Outer membrane protein H1/two component system DNA‑binding transcriptional dual regulator
	?	AE015451	1360915 =	78 (1.190)					intergenic (+175/‑22)	oprH/phoP	Outer membrane protein H1/two component system DNA‑binding transcriptional dual regulator

TGATGGCGAAGCAGGGCTTCGTCCTCGACCACCAGCAGTTTCATGTGCAGCTCCTTATGTGTATTGCCTGTACCGGCCCTTTCGCGGGCACGCCCGCTCCCACAGTAATCGCACAGTCCCTGAAACCTGTGTAGCACCTGCAGAAACCCAAGGCACTGCACAGGTTCTGAGGTTTGTGCAGCACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGTACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/1360980‑1360758 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtacaggCAATACACATAAGGAGCTGCACATGAAACTGCTGGTGGTCGAGGACGAAGCCCTGCTTCGCCATCACCTCTACACCCGCCTGGGCGAAAGCGGCCATGTGGTCGAGGCGGTCGCTGATGCCGAAGAGGCGCTGTACCAGGCCGAGCAGTACCATTTCGACCTTGCCATCATCGACCTGGGCCTGCCCGGTATCAGCGGCCTGGAGCTGATCACGCGCCTGCGCAGCCAGGACA  >  AE015451/1360915‑1361147                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TGATGGCGAAGCAGGGCTTCGTCCTCGACCACCAGCAGTTTCATGTGCAGCTCCTTATGTGTATTGCCTGTACCGGCCCTTTCGCGGGCACGCCCGCTCCCACAGTAATCGCACAGTCCCTGAAACCTGTGTAGCACCTGCAGAAACCCAAGGCACTGCACAGGTTCTGAGGTTTGTGCAGCACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAG                                                                                                                                                                                                                                                 >  1:1227070/1‑217                                                                               tcTTCGCGGGCACGCCCGCTCCCACAGTAATCGCACAGTCCCTGAAACCTGTGTAGCACCTGCAGAAACCCAAGGCACTGCACAGGTTCTGAGGTTTGTGCAGCACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGACAGTACAGGgta                                                                                                                                                                                                                                        >  2:104225/3‑145                                                                                                               GCACAGTCCCTGAAACCTGTGTAGCACCTGCAGAAACCCAACGCACTGCACAGGTTCTGAGGTTTGTGCAGCACCTGTGGGAGCGGGCGTGCCCGCGAAGCGGCCAGTACAG                                                                                                                                                                                                                                            >  2:38979/1‑112                                                                                                                     TCCCTGAAACCTGTGTAGCACCTGCAGAAACCCAAGGCACTGCACAGGTTCTGAGGTTTGTGCAGCACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGTACAGGCAATACACATAAGGAGCTGCACATGAAACTGCTGGTGGTCGAGGACGAAGCCCTGCTTCGCCATCACCTCTACACCCGCCTGGGCGAAAGCGGCCATGTGGTCGAGGCGGTCGCTG                                                                                                                       >  2:1041080/1‑223                                                                                                                                  TGTAGCACCTGCAGAAACCCAAGGCACTGCACAGGTTCTGAGGTTTGTGCAGCACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGTACAGGCAATACACATAAGGAGCTGCACATGAAACTGCTGGTGGTCGAGGACGAAGCCCTGCTTCGCCATCACCTCTACACCCGCCTGGGCGAAAGCGGCCATGTGGTCGAGGCGGTCGCTGATGCCGAA                                                                                                               >  1:179355/1‑218                                                                                                                                    TAGCACCTGCAGAAACCCAAGGCACTGCACAGGTTCTGAGGTTTGTGCAGCACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGTACAGGCAATACACATAAGGAGCTGTACAT                                                                                                                                                                                                                   <  2:1193962/116‑1                                                                                                                                    TAGCACCTGCAGAAACCCAAGGCACTGCACAGGTTCTGAGGTTTGTGCAGCACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGTACAGGCAATACACATAAGGAGCTGCACAT                                                                                                                                                                                                                   >  1:1193965/1‑116                                                                                                                                       CACCTGCAGAAACCCAAGGCACTGCACAGGTTCTGAGGTTTGTGCAGCACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGTACAGGCAATACACATAAGGAGCTGCACATGAAACTGCTGGTGGTCGAGGACGAAGCCCTGCTTCGCCATCACCTCTACACCCGCCTGGGCGAAAGCGGCCATGTGGTCGAGGCGGTCGCTGATGCCGAAGAGGCGCTGTACCAGGCCGAGC                                                                                         <  1:1041083/235‑1                                                                                                                                                                                                                             AGGCAATACACATAAGGAGCTGCACATGAAACTGCTGGTGGTCGAGGACGAAGCCCTGCTTCGCCATCACCTCTACACCCGCCTGGGCGAAAGCGGCCATGTGGTCGAGGCGGTCGCTGATGCCGAAGAGGCGCTGTACCAGGCCGAGCAGTACCATTTCGACCTTGCCATCATCGACCTGGGCCTGCCCGGTATCAGCGGCCTGGAGCTGATCACGCGCCTGCGCAGCCAGGACA  <  1:328045/236‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TGATGGCGAAGCAGGGCTTCGTCCTCGACCACCAGCAGTTTCATGTGCAGCTCCTTATGTGTATTGCCTGTACCGGCCCTTTCGCGGGCACGCCCGCTCCCACAGTAATCGCACAGTCCCTGAAACCTGTGTAGCACCTGCAGAAACCCAAGGCACTGCACAGGTTCTGAGGTTTGTGCAGCACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGTACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/1360980‑1360758 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtacaggCAATACACATAAGGAGCTGCACATGAAACTGCTGGTGGTCGAGGACGAAGCCCTGCTTCGCCATCACCTCTACACCCGCCTGGGCGAAAGCGGCCATGTGGTCGAGGCGGTCGCTGATGCCGAAGAGGCGCTGTACCAGGCCGAGCAGTACCATTTCGACCTTGCCATCATCGACCTGGGCCTGCCCGGTATCAGCGGCCTGGAGCTGATCACGCGCCTGCGCAGCCAGGACA  >  AE015451/1360915‑1361147

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.