| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | 1520979 = | 42 (0.610) | 5 (0.080) | 4/328 | NT | 11.5% | coding (236/1353 nt) | murD | UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase |
| ? | AE015451 | 1521003 = | 36 (0.540) | coding (260/1353 nt) | murD | UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase | |||||
TGTCATCGGCCAGCAGGTCGAGTGCCGGGGTACCGAGGTTACCGCCCACGGCCACGCGTTTGCCGGCCTTGGCGGCCATTTCACCGACCAGCGTCGTGACGGTGCTCTTGGCGTTGGAACCACTGATGGCAACGATCGGCGCCTTGGCATGGCGAGCAAACAGCTCTATGTCGCCAGACAGCTTCACGCCACGCGCGGCAGCCTGCTGCAAGGCCGGCGTGGCCAAGGCCAGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/1521215‑1520979‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggCCTTGCAGCAGGCTGCCGCGCGTGGCGTGAAGCTGTCTGGCGACATAGAGCTGTTTGCTCGCCATGCCAAGGCGCCGATCGTTGCCATCAGTGGTTCCAACGCCAAGAGCACCGTCACGACGCTGGTCGGTGAAATGGCCGCCAAGGCCGGCAAACGCGTGGCCGTGGGCGGTAACCTCGGTACCCCGGCACTCGACCTGCTGGCCGATGACATCGAGCTGTACGTGC > AE015451/1521003‑1521230 TGTCATCGGCCAGCAGGTCGAGTGCCGGGGTACCGAGGTTACCGCCCACGGCCACGCGTTTGCCGGCCTTGGCGGCCATTTCACCGACCAGCGTCGTGACGGTGCTCTTGGCGTTGGAACCACTGATGGCAACGATCGGCGCCTTGGCATGGCGAGCAAACAGCTCTATGTCGCCAGACAGCTTCACGCCACGCGCGGCAGCCTGCTGCAAGGCCGGCGTGGCCAAGGCCAGGCCG < 1:584930/236‑1TGTCATCGGCCAGCAGGTCGAGTGCCGGGGTACCGAGGTTACCGCCCACGGCCACGCGTTTGCCGGCCTTGGCGGCCATTTCACCGACCAGCGTCGTGACGGTGCTCTTGGCGTTGGAACCACTGATGGCAACGATCGGCGCCTTGGCATGGCGAGCAAACAGCTCTATGTCGCCAGACAGCTTCACGCCACGCGCGGCAGCCTGCTGCAAGGCCGGCGTGGCCAAGGCCAGGC < 2:1001490/234‑1 ATCGGCCAGCAGGTCGAGTGCCGGGGTACCGAGGTTACCGCCCACGGCCACGCGTTTGCCGGCCTTGGCGGCCATTTCACCGACCAGCGTCGTGACGGTGCTCTTGGCGTTGGAACCACTGATGGCAACGATCGGCGCCTTGGCATGGCGAGCAAACAGCTCTATGTCGCCAGACAGCTTCACGCCACGCGCGGCAGCCTGCTGCAAGGCCGGCGTGGCCAAGGCCAGGCCGG < 1:516817/233‑1 AGTGCCGGGGTACCGAGGTTACCGCCCCCGGCCACGCGTTTGCCGGCCTTGGCGGCCATTTCACCGACCAGCGTCGTGGCGGTGCTCTTGGCGTTGGAACCACTGATGGCAACGATCGGCGCCTTCGCATGGCGAGCAAACAGCTCTATGTCGCCAGACAGCTTCACGCCACGCGCGGCAGCCTGCTGCAAGGCCGGCGTGGCCAAGGCCAGGCCG < 2:763294/216‑1 GTTTGCCGGCCTTGGCGGCCATTTCACCGACCAGCGTCGTGACGGTGCTCTTGGCGTTGGAACCACTGATGGCAACGATCGGCGCCTTGGCATGGCGAGCAAACAGCCCTATGTCGCCAGACAGCTTCACGCCACGCGCGGCAGCCTGCTGCCAGGGCGGCGTGGCCCAGGCCAGG > 1:26688/1‑176 CGGCCTTGGCGGCCATTTCACCGACCAGCGTCGTGACGGTGCTCTTGGCGTTGGAACCACTGATGGCAACGATCGGCGCCTTGGCATGGCGAGCAAACAGCTCTATGTCGCCAGACAGCTTCACGCCACGCGCGGCAGCCTGCTGCAAGGCCGGCGTGGCCAAGGCCAGGCCGGCCTTGCAGCAGGCTGCCGC < 2:550444/193‑1 CTCTTGGCGTTGGAACCACTGATGGCAACGATCGGCGCCTTGGCATGGCGAGCAAACAGCTCTATGTCGCCAGACAGCTTCACGCCACGCGCGGCAGCCTGCTGCAAGGCCGGCGTGGCCAAGGCCAGGC < 1:1281735/130‑1 CTCTTGGCGTTGGAACCACTGATGGCAACGATCGGCGCCTTGGCATGGCGAGCAAACAGCTCTATGTCGCCAGACAGCTTCACGCCACGCGCGGCAGCCTGCTGCAAGGCCGGCGTGGCCAAGGCCAGGC > 2:1281732/1‑130 AACCACTGATGGCAACGATCGGCGCCTTGGCATGGCGAGCAAACAGCTCTATGTCGCCAGACAGCTTCACGCCACGCGCGGCAGCCTGCTGCAAGGCCGGCGTGGCCAAGGCCAGGC < 2:185084/117‑1 CCACTGATGGCAACGATCGGCGCCTTGGCATGGCGAGCAAACAGCTCTAGGTCGCCAGACAGCTTCACGCCACGCGCGGCAGCCTGCTGCAAGGCCGGCGTGGCCAAGGCCAGGCCGGCCTTGCAGCAGGCTGCCGC < 1:377403/137‑1 GCGAGCAAACAGCTCTATGTCGCCAGACAGCTTCACGACCCGCGCGGCAGCCTGCTGCAAGGCCTGCGTGCCCAAGGCCAGGCCGGCCTTGCAGCAGGCTGCCGCGCGTG < 2:1068685/110‑1 CAAACAGCTCTATGTCGCCAGACAGCTTCACGCCACGCGCGGCAGCCTGCTGCAAGGCCGGCGTGGCCAAGGCCAGGCCGGCCTTGCAGCAGGCTGCCGCGCGTGGCGTGAAGCTGTCTGGCGACATAG < 2:729172/129‑1 gATGTCGCCAGACAGCTTCGCGCCACGCGCGGCAGCCTGCTGCAAGGCCGGCGTGGCCAAGGCCAGGCCGGCCTTGCAGCAGGCTGCCGCGCGTGGCGTGAAGCTGTC < 2:491898/107‑1 tttGCCGGCCTTGCAGCAGGCTGCCGCGCGTGGCGTGAAGCTGTCTGGCGACATAGAGCTGTTTGCTCGCCATGCCAAGGCGCCGATCGTTGCCATCAGTGGTTCCAACGCCAAGAGCACCGTCACGACGCTGGTCGGTGAAATGGCCGCCAAGGCCGGCAAACGCGTGGCCGTGGGCGGTAACCTCGGTACCCCGGCACTCGACCTGCTGGCCGATGACATCGAGCTGTACGTGC > 1:1058859/4‑236 CCGGCCTTGCAGCAGGCTGCCGCGCGTGGCGTGAAGCTGTCTGGCGACATAGAGCTGTTTGCTCGCCATGCCAAGGCGCCGATCGTTGCCATCAGTGGTTCCAACGCCAAGAGCACCGTCACGACGCTGGTCGGTGAAATGGCCGCCAAGGCCGGCAAACGCGTGG < 1:169455/166‑1 CGGCCTTGCAGCAGGCTGCCGCGCGTGGCGTGAAGCTGTCTGGCGACATAGAGCTGTTTGCTCGCCATGCCAAGGCGCCGATCGTTGCCATCAGTGGTTCCAACGCCAAGAGCACCGTCACGACGCTGGTCGGTGAAATGGCCGCCAAGGCCGGCAAACGCGTGGCCGTGGGCGGTAACCTCGGTACCCCGGCACTCGAC > 2:1100970/1‑200 CGGCCTTGCAGCAGGCTGCCGCGCGTGGCGTGAAGCTGTCTGGCGACATAGAGCTGTTTGCTCGCCATGCCAAGGCGCCGATCGTTGCCATCAGTGGTTCCAACGCCAAGAGCACCGTCACGACGCTGGTCGGTGAAATGGCCGCCAAGGCCGGCAAACGCGTGGCCGTGGGCGGTAACCTCGGTACCCCGGCA > 2:1176871/1‑194 CGGCCTTGCAGCAGGCTGCCGCGCGTGGCGTGAAGCTGTCTGGCGACATAGAGCTGTTTGCTCGCCATGCCAAGGCGCCGATCGTTGCCATCAGTGGTTCCAACGCCAAGAGCACCGTCACGACGCTGGTCGGTGAAATGGCCGCCAAGGCCGGCAAACGCGTGGCCGTGGGCGGTAACCTCGGGACCCCGGCACTCGACCTGCTGGCCGAGGACATCGGGCTGGAC > 1:201453/1‑227 GGCCTTGCAGCAGGCTGCCGCGCGTGGCGTGAAGCTGTCTGGCGACATAGAGCTGTTTGCTCGCCATGCCAAGGCGCCGATCGTTGCCATCAGTGGTTCCAACGCCAAGAGCACCGTCACGACGCTGGTCGGTGAAATGGCCGCCAAGGCCGGCAAACGCGTGGCCGTGGGCGGTAACCTCGGTACCCCGGCACTCGACCTGCTGGCCGATta > 2:1190578/1‑211 TGTCATCGGCCAGCAGGTCGAGTGCCGGGGTACCGAGGTTACCGCCCACGGCCACGCGTTTGCCGGCCTTGGCGGCCATTTCACCGACCAGCGTCGTGACGGTGCTCTTGGCGTTGGAACCACTGATGGCAACGATCGGCGCCTTGGCATGGCGAGCAAACAGCTCTATGTCGCCAGACAGCTTCACGCCACGCGCGGCAGCCTGCTGCAAGGCCGGCGTGGCCAAGGCCAGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/1521215‑1520979‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggCCTTGCAGCAGGCTGCCGCGCGTGGCGTGAAGCTGTCTGGCGACATAGAGCTGTTTGCTCGCCATGCCAAGGCGCCGATCGTTGCCATCAGTGGTTCCAACGCCAAGAGCACCGTCACGACGCTGGTCGGTGAAATGGCCGCCAAGGCCGGCAAACGCGTGGCCGTGGGCGGTAACCTCGGTACCCCGGCACTCGACCTGCTGGCCGATGACATCGAGCTGTACGTGC > AE015451/1521003‑1521230 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |