New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	1520979 =	42 (0.610)	5 (0.080)	4/328	NT	11.5%	coding (236/1353 nt)	murD	UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase
	?	AE015451	1521003 =	36 (0.540)					coding (260/1353 nt)	murD	UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase

TGTCTTTGATCGCTTCCGACCAATTCCGCATCGTTGTCGGCCTCGGCAAGAGCGGCATGTCCCTGGTTCGCTTCCTGGCGAGCCGGGGCATTGCCTTTGCGGTCGCCGATACCCGCGAGCAGCCGCCGGAACTGGAAACCCTGCGCCGTGATTACCCGCAGGTGGAAGTGCGCTGTGGTGAACTGGACGTGGACTTCCTGTGCCGCGCCAACGAGCTGTACGTGAGCCCCGGCCTGGCCTTGGCCACGCCGGCCTTGCAGCAGGCTGCCGCGCGTGGCGTGAAGCTGTCTGGCGACATAGAGCTGTTTGCTCGCCATGCCAAGGCGCCGATCGTTGCCATCAGTGGTTCCAACGCCAAGAGCACCGTCACGACGCTGGTCGGTGAAATGGCCGCCAAGGCCGGCAAACGCGTGGCCGTGGGCGGTAACCTCGGTACCCCGGCACTCGACCTGCTGGCCGAT  >  AE015451/1520751‑1521211                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                         tgtCTTTGATCGCTTCCGACCAATTCCGCATCGTTGTCGGCCTCGGCAAGAGCGGCATGTCCCTGGTTCGCTTCCTGGCGAGCCGGGGCATTGCCTTTGCGGTCGCCGATACCCGCGAGCAGCCGCCGGAACTGGAAACCCTGCGCCGTGATTACCCGCAGGTGGAAGTGCGCTGTGGTGAACTGGACGTGGACTTCCTGTGCCGCGCCAACGAGCTGTACGTGAGCCCCggcctg                                                                                                                                                                                                                                   >  1:916402/1‑236 (MQ=255) gcacgtacagctcgatgtcatcggccagcaggtcgagtgccggggtaccgaggttaccgcccacggccacgcgtttgccggccttggcggccatttcaccgaccagcgtcgtgacggtgctcttggcgttggaaccactgatggcaacgatcggcgccttggcatggcgagcaaacagctctatgtcgccagacagcttcacgccacgcgcggcagcctgctgcaaggccggcaaa                                                                                                                                                                                                                                   >  1:1058859‑M1/229‑233 (MQ=255)     gtccagcccgatgtcctcggccagcaggtcgagtgccggggtcccgaggttaccgcccacggccacgcgtttgccggccttggcggccatttcaccgaccagcgtcgtgacggtgctcttggcgttggaaccactgatggcaacgatcggcgccttggcatggcgagcaaacagctctatgtcgccagacagcttcacgccacgcgcggcagcctgctgcaaggccg                                                                                                                                                                                                                                        >  1:201453‑M1/225‑227 (MQ=255)                ccGACCAATTCCGCATCGTTGTCGGCCTCGGCAAGAGCGGCATGTCCCTGGTTCGCTTCCTGGCGAGCCGGGGCATTGCCTTTGCGGTCGCCGATACCCGCGAGCAGCCGCCGGAACTGGAAACCCTGCGCCGTGATTACCCGCAGGTGGAAGTGCGCTGTGGTGAACTGGACGTGGACTTCCTGTGCCGCGCCAACGAGCTGTACGTGAGCCCCGGCCTGGCCTTGGCCACGc                                                                                                                                                                                                                      >  2:820848/1‑234 (MQ=255)                 cGACCAATTCCGCATCGTTGTCGGCCTCGGCAAGAGCGGCATGTCCCTGGTTCGCTTCCTGGCGAGCCGGGGCATTGCCTTTGCGGTCGCCGATACCCGCGAGCAGCCGCCGGAACTGGAAACCCTGCGCCGTGATTACCCGCAGGTGGAAGTGCGCTGTGGTGAACTGGACGTGGACTTCCTGTGCCGCGCCAACGAGCTGTACGTGAGCCCCGGCCTGGCCTTGGCCACGCCgg                                                                                                                                                                                                                   <  1:820851/236‑1 (MQ=255)                  taatcggccagcaggtcgagtgccggggtaccgaggttaccgcccacggccacgcgtttgccggccttggcggccatttcaccgaccagcgtcgtgacggtgctcttggcgttggaaccactgatggcaacgatcggcgccttggcatggcgagcaaacagctctatgtcgccagacagcttcacgccacgcgcggcagcctgctgcaaggcc                                                                                                                                                                                                                                         >  2:1190578‑M1/212‑213 (MQ=255)                         tCCGCATCGTTGTCGGCCTCGGCAAGAGCGGCATGTCCCTGGTTCGCTTCCTGGCGAGCCGGGGCATTGCCTTTGCGGTCGCCGATACCCGCGAGCAGCCGCCGGAACTGGAAACCCTGCGCCGTGATTACCCGCAGGTGGAAGTGCGCTGTGGTGAACTGGACGTGGACTTCCTGTGCCGCGCCAACGAGCTGTACGTGAGCCCCg                                                                                                                                                                                                                                        <  1:33980/207‑1 (MQ=255)                                gtcgagtgccggggtaccgaggttaccgcccacggccacgcgtttgccggccttggcggccatttcaccgaccagcgtcgtgacggtgctcttggcgttggaaccactgatggcaacgatcggcgccttggcatggcgagcaaacagctctatgtcgccagacagcttcacgccacgcgcggcagcctgctgcaaggccg                                                                                                                                                                                                                                        >  2:1100970‑M1/198‑200 (MQ=255)                                cGTTGTCGGCCTCGGCAAGAGCGGCATGTCCCTGGTTCGCTTCCTGGCGAGCCGGGGCATTGCCTTTGCGGTCGCCGATACCCGCGAGCAGCCGCCGGAACTGGAAACCCTGCGCCGTGATTACCCGCAGGTGGAAGTGCGCTGTGGTGAACTGGACGTGGACTTCCTGTGCCGCGCCAACGAGCTGTACGTGAGCCCCGGCCTGGCCTTGGCCACGCCGGCCTTGCAGCAGGCTg                                                                                                                                                                                                    >  1:700914/1‑236 (MQ=255)                                 gTTGTCGGCCTCGGCAAGAGCGGCATGTCCCTGGTTCGCTTCCTGGCGAGCCGGGGCATTGCCTTTGCGGTCGCCGATACCCGCGAGCAGCCGCCGGAACTGGAAACCCTGCGCCGTGATTACCCGCAGGTGGAAGTGCGCTGTGGTGAACTGGACGTGGACTTCCTGTGCCGCGCCAACGAGCTGTACGTGAGCCCCGGCCTGGCCTTGGCCAc                                                                                                                                                                                                                        <  1:746303/215‑1 (MQ=255)                                      tgccggggtaccgaggttaccgcccacggccacgcgtttgccggccttggcggccatttcaccgaccagcgtcgtgacggtgctcttggcgttggaaccactgatggcaacgatcggcgccttggcatggcgagcaaacagctctatgtcgccagacagcttcacgccacgcgcggcagcctgctgcaaggccg                                                                                                                                                                                                                                        >  2:1176871‑M1/192‑194 (MQ=255)                                       ggCCTCGGCAATAGCGGCATGTCCCTGGTTCGCTTCCTGGCGAGCCGGGGCATTGCCTTTGCGGTCGCCGATACCCGCGAGCAGCCGCCGGAACTGGAAACCCTGCGCCGTGATTACCCGCAGGTGGAAGTGCGCTGTGGTGAACTGGACGTGGACTTCCTGTGCCGCGCCAACGAGCTGTACGTGAGCCCCGGCCTGGCCTTGGCCACGCCGGCCTTGCAGCAGGCTGCcgcgc                                                                                                                                                                                              <  1:395548/235‑1 (MQ=255)                                       ggCCTCGGCAAGAGCGGCATGTCCCTGGTTCGCTTCCTGGCGAGCCGGGGCATTGCCTTTGCGGTCGCCGATACCCGCGAGCAGCCGCCGGAACTGGAAACCCTGCGCCGTGATTACCCGCAGGTGGAAGTGCGCTGTGGTGAACTGGACGTGGACTTCCTGTGCCGCGCCAACGAGCTGTACGTGAGCCCCGGCCTGGCCTTGGCCACGCCGGCCTTGCAGCAGGCTGCcg                                                                                                                                                                                                 <  2:727257/232‑1 (MQ=255)                                                        cATGTCCCTGGTTCGCTTCCTGGCGAGCCGGGGCATTGCCTTTGCGGTCGCCGATACCCGCGAGCAGCCGCCGGAACTGGAAACCCTGCGCCGTGATTACCCGCAGGTGGAAGTGCGCTGTGGTGAACTGGACGTGGACTTCCTGTGCCGCGCCAACGAGCTGTACGTGAGCCCCGGCCTGGCCTTGGCCACGCCGGCCTTGCAGCAGGCTGCCGCGCGTGGCGTGAAGCt                                                                                                                                                                                 <  2:1064116/231‑1 (MQ=255)                                                              ccTGGTTCGCTTCCTGGCGAGCCGGGGCATTGCCTTTGCGGTCGCCGATACCCGCGAGCAGCCGCCGGAACTGGAAACCCTGCGCCGTGATTACCCGCAGGTGGAAGTGCGCTGTGGTGAACTGGACGTGGACTTCCTGTGCCGCGCCAACGAGCTGTACGTGAGCCCCGGCCTGGCCTTGGCCACGCCGGCCTTGCAGCAGGCTGCCGCGCGTGGCGTGAAGCTGTCTGGCg                                                                                                                                                                         <  2:634434/233‑1 (MQ=255)                                                                   ccacgcgtttgccggccttggcggccatttcaccgaccagcgtcgtgacggtgctcttggcgttggaaccactgatggcaacgatcggcgccttggcatggcgagcaaacagctctatgtcgccagacagcttcacgccacgcgcggcagcctgctgcaaggccgg                                                                                                                                                                                                                                       <  1:169455‑M1/4‑1 (MQ=255)                                                                         tCCTGGCGAGCCGGGGCATTGCCTTTGCGGTCGCCGATACCCGCGAGCAGCCGCCGGAACTGGAAACCCTGCGCCGTGATTACCCGCAGGTGGAAGTGCGCTGTGGTGAACTGGACGTGGACTTCCTGTGCCGCGCCAACGAGCTGTACGTGAGCCCCGGCCTGGCCTTGGCCACGCCGGCCTTGCAGCAGGCTGCCGCGCGTGGCGTGAAGCTg                                                                                                                                                                                >  1:1048015/1‑215 (MQ=255)                                                                          ccTGGCGAGCCGGGGCATTGCCTTTGCGGTCGCCGATACCCGCGAGCAGCCGCCGGAACTGGAAACCCTGCGCCGTGATTACCCGCAGGTGGAAGTGCGCTGTGGTGAACTGGACGTGGACTTCCTGTGCCGCGCCAACGAGCTGTACGTGAGCCCCGGCCTGGCCTTGGCCACGCCGGCCTTGCAGCAGGCTGCCGCccgtggc                                                                                                                                                                                         >  1:957271/1‑205 (MQ=255)                                                                           cTGGCGAGCCGGGGCATTGCCTTTGCGGTCGCCGATACCCGCGAGCAGCCGCCGGAACTGGAAACCCTGCGCCGTGATTACCCGCAGGTGGAAGTGCGCTGTGGTGAACTGGACGTGGACTTCCTGTGCCGCGCCAACGAGCTGTACGTGAGCCCCGGCCTGGCCTTGGCCACGCCGGCCTTGCAGCAGGCTGCCGCGCGTGGCGTGAAGCTGTCTGGCGACATAGAGCTGTTTGc                                                                                                                                                         <  1:1108708/236‑1 (MQ=255)                                                                              gCGAGCCGGGGCATTGCCTTTGCGGTCGCCGATACCCGCGAGCAGCCGCCGGAACTGGAAACCCTGCGCCGCGATTACCCGCAGGTGCAAGTGCGCTGTGGTGAACTGGACGTGGACTTCCTGTGCCGCGCCAACGAGCTGTACGTGAGCCCCGGCCTGACCTTGGCCACGCCGGCCTTGCAGCAAGCTGCCGCGCGTGGCGTGAAGCTGTCTGGCGACATAGAGCTGTTTGc                                                                                                                                                         <  2:764870/233‑1 (MQ=255)                                                                                      gggCATTGCCTTTGCGGTCGCCGCTACCCGCGAGCAGCCGCCGGAACTGGAAACCCTGCGCCGTGATTACCCGCAGGTGGAAGTGCGCTGTGGTGAACTGGACGTGGACTTCCTGTGCCGCGCCAACGAGCTGTACGTGAGCCCCGGCCTGGCCTTGGCCACGc                                                                                                                                                                                                                      <  1:99682/164‑1 (MQ=255)                                                                                            tGCCTTTGCGGTCGCCGATACCCGCGAGCAGCCGCCGGAACTGGAAACCCTGCGCCGTGATTACCCGCAGGTGGAAGTGCGCTGTGGTGAACTGGACGTGGACTTCCTGTGCCGCGCCAACGAGCTGTACGTGAGCCCCGGCCTGGCCTTGGCCACGCCGGCCTTGCAGCAGGCTGCCGCGCGTGGCGTGAAGCTGTCTGGc                                                                                                                                                                          <  2:916399/202‑1 (MQ=255)                                                                                               cTTTGCGGTCGCCGATACCCGCGAGCAGCCGCCGGAACTGGAAACCCTGCGCCGTGATTACCCGCAGGTGGAAGTGCGCTGTGGTGAACTGGACGTGGACTTCCTGTGCCGCGCCAACGAGCTGTACGTGAGCCCCGGCCTGGCCTTGGCCACGCCGGCCTTGCAGCAGGCTGCCGCGCGTGGCGTGAAGCTGTCTGGCGACATAGAGCTGTTTGCTCGCCATGCCAAGGCGCCGa                                                                                                                                     <  1:597130/236‑1 (MQ=255)                                                                                                    cGGTCGCCGATACGCGCGAGCAGCCGCCGGAACTGGAAACCCTGCGCCGTGATTACCCGCAGGTGGAAGTGCGCTGTGGTGAACTGGACGTGGACTTCCTGTGCCGCGCCAACGAGCTGTACGTGAGCCCCGGCCTGGCCTTGGCCACGCCGGCCTTGCAGCAGGCTGCCGCgcgtg                                                                                                                                                                                           <  1:777263/177‑1 (MQ=255)                                                                                                    cGGTCGCCGATACCCGCGAGCAGCCGCCGGAACTGGAAACCCTGCGCCGTGATTACCCGCAGGTGGAAGTGCGCTGTGGTGAACTGGACGTGGACTTCCTGTGCCGCGCCAACGAGCTGTACGTGAGCCCCGGCCTGGCCTTGGCCACGCCGGCCTTGCAGCAGGCTGCCGCGCGTGGCGTGAAGCTGTCTGGCGACATAGAGCTGTTTGCTCGCCATGCCacg                                                                                                                                            >  2:1209721/1‑222 (MQ=255)                                                                                                     ggTCGCCGATACCCGCGAGCAGCCGCCGGAACTGGAAACCCTGCGCCGTGATTACCCGCAGGTGGAAGTGCGCTGTGGTGAACTGGACGTGGACTTCCTGTGCCGCGCCAACGAGCTGTACGTGAGCCCCggcctggcc                                                                                                                                                                                                                                >  2:1144059/1‑139 (MQ=255)                                                                                                       tCGCCGATACCCGCGAGCAGCCGCCGGAACTGGAAACCCTGCGCCGTGATTACCCGCAGGTGGAAGTGCGCTGTGGTGAACTGGACGTGGACTTCCTGTGCCGCGCCAACGAGCTGTACGTGAGCCCCGGCCTGGCCTTGGCCACGCCGGCCTTGCAGCAGGCTGCCGCGCGTGGCGTGAAGCTGTCTGGCGACATAGAGCTGTTTGCTCGCCATGCCAAGGCGCCGATCGTTGcc                                                                                                                             <  1:742897/236‑1 (MQ=255)                                                                                                         ggcGATACCCGCGAGCAGCCGCCGGAACGGGAAACCCTGCGGCGTGAGTACCCGCAGGTGGAAGTGCGCTGTGGTGAACTGGACGTGGACTTCCTGTGCCGCGGCAACGAGCTGTACGTGAGCCCCg                                                                                                                                                                                                                                        <  2:148298/125‑1 (MQ=255)                                                                                                            gATACCCGCGAGCAGCCGCCGGAACTGGAAACCCTGCGCCGTGATTACCCGCAGGTGGAAGTGCGCTGTGGTGAACTGGACGTGGACTTCCTGTGCCGCGCCAACGAGCTGTACGTGAGCCCCGGCCTGGCCTTGGCCACGCCGGCCTTGCAGCAGGCTGCCGCGCGTGGCGTGAAGCTGTCTGGCGACATAGAGCTGTTTGCTCGCCATGCCAAGGCGCCGATCGTTGCCa                                                                                                                            >  2:571995/1‑232 (MQ=255)                                                                                                               aCCCGCGAGCAGCCGCCGGAACTGGAAACCCTGCGCCGTGATTACCCGCAGGTGGAAGTGCGCTGTGGTGAACTGGACGTGGACTTCCTGTGCCGCGCCAACGAGCTGTACGTGAGCCCCGGCCTGGCCTTGGCCACGCCGGCCTTgca                                                                                                                                                                                                            <  1:61033/149‑1 (MQ=255)                                                                                                                 ccGCGAGCAGCCGCCGGAACTGGAAACCCTGCGCCGTGATTACCCGCAGGTGGAAGTGCGCTGTGGTGAACTGGACGTGGACTTCCTGTGCCGCGCCAACGAGCTGTACGTGAGCCCGGGCCTGGCCTTGGCCACGCCGGCCTTGCAGCAGGCTGCCGCGCGTGGCGTGAAGCTGTCTGGCGACATAGAGCTGTTTGCTCGCCATGCCAAGGCGCCGATCGTTGCCATCAGTGGt                                                                                                                    <  1:1248755/235‑1 (MQ=255)                                                                                                                 ccGCGAGCAGCCGCCGGAACTGGAAACCCTGCGCCGTGATTACCCGCAGGTGGAAGTGCGCTGTGGTGAACTGGACGTGGACTTCCTGTGCCGCGCCAACGAGCTGTACGTGAGCCCCGGCCTGGCCTTGGCCACGCCGGCCTTGCAGCAGGCTGCCGCGCGTGGCGTGAAGCTGTCTGGCGACATAGAGCTGTTTGCTCGCCATGCCAAGGCGCCGa                                                                                                                                     <  2:709705/218‑1 (MQ=255)                                                                                                                 ccGCGAGCAGCCGCCGGAACTGGAAACCCTGCGCCGTGATTACCCGCAGGTGGAAGTGCGCTGTGGTGAACTGGACGTGGACTTCCTGTGCCGCGCCAACGAGCTGTACGTGAGCCCCGGCCTGGCCTTGGCCACGCCGGCCTTGCAGCAGGCTGCCGCGCGTGGCGTGAAGCTGTCTGGCGACATAGAGCTGTTTGCTCGCCATGCCAAGGCGCCGATCGTTGCCATCAGTGGtt                                                                                                                   <  1:915548/236‑1 (MQ=255)                                                                                                                      agcagcCGCCGGAACTGGAAACCCTGCGCCGTGATTACCCGCAGGTGGAAGTGCGCTGTGGTGAACTGGACGTGGACTTCCTGTGCCGCGCCAACGAGCTGTACGTGAGCCCCGGCCTGGCCTTGGCCACGCCGGCCTTGCAGCAGGCTGCCGCGCGTGGCGTGAAGCTGTCTGGCGACATAGAGCTGttgg                                                                                                                                                          >  2:874543/1‑190 (MQ=255)                                                                                                                      agcagcCGCCGGAACTGGAAACCCTGCGCCGTGATTACCCGCAGGTGGAAGTGCGCTGTGGTGAACTGGACGTGGACTTCCTGTGCCGCGCCAACGAGCTGTACGTGAGCCCCGGCCTGGCCTTGGCCACGCCGGCCTTGCAGCAGGCTGCCGCGCGTGGCGTGAAGCTGTCTGGCGACATAGAGCTGTTTGCTCGCCATGCCAAGGCGCCGATCGTTGCCATCAGTGGTTCCAAc                                                                                                              <  1:571998/236‑1 (MQ=255)                                                                                                                           gcgccgGAACTGGAAACCCTGCGCCGTGATTACCCGCAGGTGGAAGTGCGCTGTGGTGAACTGGACGTGGACTTCCTGTGCCGCGCCAACGAGCTGTACGTGAGCCCCGGCCTGGCCTTGGCCACGCCGGCCTTGCAGCAGGCTGCCGCGCGTGGCGTGAAGCTGTCTGGCg                                                                                                                                                                         <  1:184249/171‑1 (MQ=255)                                                                                                                                            ccTGCGCCGTGATTACCCGCAGGTGGAAGTGCGCTGTGGTGAACTGGACGTGGACTTCCTGTGCCGCGCCAACGAGCTGTACGTGAGCCCCGGCCTGGCCTTGGCCACGCCGGCCTTGCAGCAGGCTGCCGCGCGTGGCGTGAAGCTGTc                                                                                                                                                                              <  2:146806/150‑1 (MQ=255)                                                                                                                                              tGCGCCGTGATTACCCGCAGGTGGAAGTGCGCTGTGGGGAACGGGACGTGGACTTCCTGTGCCGCGCCAACGAGCTGTACGTGAGCCCCGGCCTGGCCTTGGCCACGCCGGCCTTGCAGCAGGCTGCCGCgcgtggcgtg                                                                                                                                                                                      <  2:68030/140‑1 (MQ=255)                                                                                                                                                 gcCGTGATTACCCGCAGGTGGAAGTGCGCTGTGGTGAACTGGACGTGGACTTCCTGTGCCGCGCCAACGAGCTGTACGTGAGCCCCGGCCTGGCCTTGGCCACGCCGGCCTTGCAGCAGGCTGCCGCGCGTGGCGTGAAGCTGTCTgg                                                                                                                                                                           >  2:103495/1‑148 (MQ=255)                                                                                                                                                  ccGTGATTACCCGCAGGTGGAAGTGCGCTGTGGTGAACTGGACGTGGACTTCCTGTGCCGCGCCAACGAGCTGTACGTGAGCCCCGGCCTGGCCTTGGCCACGCCGGCCTTGCAGCAGGCTGCCGCGCGTGGCGTGAAGCTGTCTGGCGACATAGAGCTGTTTGCTCGCCATGCCAAg                                                                                                                                            <  1:82512/178‑1 (MQ=255)                                                                                                                                                                  gTGGAAGTGCGCTGTGGTGAACTGGACGTGGACTTCCTGTGCCGCGCCAACGAGCTGTACGTGAGCCCCGGCCTGGCCTTGGCCACGCCGGCCTTGCAGCAGGCTGCCGCGCGTGGCGTGAAGCTGTCTGGCGACATAGAGCTGTTTGCTCGCCATGCCAAGGCGCCGATCGTTGCCATCAGTGGTTCCAACGCCaa                                                                                                         >  1:1238878/1‑197 (MQ=255)                                                                                                                                                                               gtggtgAACTGGACGTGGACTTCCTGTGCCGCGCCAACGAGCTGTACGTGAGCCCCGGCCTGGCCTTGGCCACGCCGGCCTTGCAGCAGGCTGCCGCGCGTGGCGTGAAGCTGTCTGGCGACATAGAGCTGTTTGCTCGCCATGCCAAGGCGCCGATCGtt                                                                                                                                <  2:599012/161‑1 (MQ=255)                                                                                                                                                                               gtggtgAACTGGACGTGGACTTCCTGTGCCGCGCCAACGAGCTGTACGTGAGCCCCGGCCTGGCCTTGGCCACGCCGGCCTTGCAGCAGGCTGCCGCGCGTGGCGTGAAGCTGTCTGGCGACATAGAGCTGTTTGCTCGCCATGCCAAGGCGCCGATCGTTGCCATCAGTGGTTCCAACGCCAAGAGCACCGTCACGACGCTGGTCGGTGAAATGGCCGCCAAGGCCGGCcaa                                                        >  2:780733/1‑233 (MQ=255)                                                                                                                                                                                  gtgAACTGGACGTGGACTTCCTGTGCCGCGCCAACGAGCTGTACGTGAGCCCCGGCCTGGCCTTGGCCACGCCGGCCTTGCAGCAGGCTGCCGCGCGTGGCGTGAAGCTGTCTGGCGACATAGAGCTGTTTGCTCGCCATGCCAAGGCGCCGATCGTTGCCATCAGTGGTTCCAACGCCAAGAGCACCg                                                                                                 <  2:1048012/189‑1 (MQ=255)                                                                                                                                                                                   tgAACTGGACGTGGACTTCCTGTGCCGCGCCAACGAGCTGTACGTGAGCCCCGGCCTGGCCTTGGCCACGCCGGCCTTGCAGCAGGCTGCCGCGCGTGGCGTGAAGCTGt                                                                                                                                                                               <  1:370613/110‑1 (MQ=255)                                                                                                                                                                                   tgAACTGGACGTGGACTTCCTGTGCCGCGCCAACGAGCTGTACGTGAGCCCCGGCCTGGCCTTGGCCACGCCGGCCTTGCAGCAGGCTGCCGCGCGTGGCGTGAAGCTGTCTGGCGACATAGAGCTGTTTGCTCGCCATGCCAAGGCGCCGATCGTTGCCATCAGTGGTTCCAACGCCAAGAGCACCGTCACGACGCTGGTCGGTGAAATGGCCGCCAAGGCCGGCAAACGCGTgg                                                 >  1:1077188/1‑236 (MQ=255)                                                                                                                                                                                     ctatgtcgccagacagcttcacgccacgcgcggcagcctgctgcaaggCCGGCCTGGCCTTGGCCACGCCGGCCTTGCAGCAGGCTGCCGCGCGTGGCGTGAAGCTGTCTGGCGACATAGAGCTGTTTg                                                                                                                                                          <  2:729172‑M1/81‑1 (MQ=255)                                                                                                                                                                                             gTGGACTTCCTGTGCCGCGCCAACGAGCTGTACGTGAGCCCCGGCCTGGCCTTGGCCACGCCGGCCTTGCAGCAGGCTGCCGCGCGTGGCGTGAAGCTGTCTGGCGACATAGAGCTGTTTGCTCGCCATGCCCACGCGCCGAt                                                                                                                                    >  2:87553/1‑143 (MQ=255)                                                                                                                                                                                             gTGGACTTCCTGTGCCGCGCCAACGAGCTGTACGTGAGCCCCGGCCTGGCCTTGGCCACGCCGGCCTTGCAGCAGGCTGCCGCGCGTGGCGTGAAGCTGTCTGGCGACATAGAGCTGTTTGCTCGCCATGCCAAGGCGCCGATCGTTGCCATCAGTGGTTCCAACGCCaa                                                                                                         >  2:906664/1‑170 (MQ=255)                                                                                                                                                                                                gacagcttcacgccacgcgcggcagcctgctgcaaggCCGGCCTGGCCTTGGCCACGCCGGCCTTGCAGCAGGCTGCCGCGCGTGGCGCGAAGCTGTCTGGCGACatc                                                                                                                                                                    <  2:491898‑M1/71‑2 (MQ=255)                                                                                                                                                                                                         tgCCGCGCCAACGAGCTGTACGTGAGCCCCGGCCTGGCCTTGGCCACGCCGGCCTTGCAGCAGGCTGCCGCGCGTGGCGTGAAGCTGTCTGGCGACATAGAGCTGTTTGCTCGCCATGCCAAGGCGCCGATCGTTGCCATCAGTGGTTCCAACGCCAAGAGCACCGTCACGACGCTGGTCGGTGAAATGGCCGCCAAGGCCGGCAAACGCGTGGCCGTGGGCGGTAACCGCGGGAc                           >  1:143187/1‑236 (MQ=255)                                                                                                                                                                                                         ggCCGCGCCAACGAGCTGTACGTGAGCCCCGGCCTGGCCTTGGCCACGCCGGCCTTGCAGCAGGCTGCCGCGCGTGGCGTGAAGCTGTCTGGCGACATAGAGCTGTTTGCTCGCCATGCCAAGGCGCCGATCGTTGCCATCAGTGGTTCCAACGCCAAGAGCACCGTCACGACGCTGGTCGGTGAAATGGCCGCCAAGGCCGGCAAACGCGTGGCCGTGGGc                                         <  1:166462/221‑1 (MQ=255)                                                                                                                                                                                                             cacgcgcggcagcctgctgcaaggCCGGCCTGGCCTTGGGCACGCAGGCCTTGCAGCAGGCTGCCGCGCGGGTCGTGAAGCTGTCTGGCGACATAGAGCTGTTTGCTCGc                                                                                                                                                     <  2:1068685‑M1/86‑1 (MQ=255)                                                                                                                                                                                                                  gcggcagcctgctgcaaggCCGGCCTGGCCTTGGCCACGCCGGCCTTGCAGCAGGCTGCCGCGCGTGGCGTGAAGCTGTCTGGCGACCTAGAGCTGTTTGCTCGCCATGCCAAGGCGCCGATCGTTGCCATCAGTgg                                                                                                                     <  1:377403‑M1/118‑1 (MQ=255)                                                                                                                                                                                                                  gcggcagcctgctgcaaggCCGGCCTGGCCTTGGCCACGCCGGCCTTGCAGCAGGCTGCCGCGCGTGGCGTGAAGCTGTCTGGCGACATAGAGCTGTTTGCTCGCCATGCCAAGGCGCCGATCGTTGCCATCAGTGGTTCCAACGCCAAGAGCACCGTCACGACGCTGGTCGGTGAAATGGCCGCCAAGGCCg                                                             <  2:550444‑M1/174‑1 (MQ=255)                                                                                                                                                                                                                                     CCGGCCTGGCCTTGGCCACGCCGGCCTTGCAGCAGGCTGCCGCGCGTGGCGTGAAGCTGTCTGGCGACATAGAGCTGTTTGCTCGCCATGCCAAGGCGCCGATCGTTGCCATCAGTGGTTCCAACGCCAAGAGCACCGTCACGACGCTGGTCGGTGAAATGGCCGCCAAGGCCGGCAAACGCGTGGCCGTGGGCGGTAACCTCGGTACCCCGGCACTCGACCTGCTGGCCGAt  <  1:516817‑M1/233‑1 (MQ=255)                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                         TGTCTTTGATCGCTTCCGACCAATTCCGCATCGTTGTCGGCCTCGGCAAGAGCGGCATGTCCCTGGTTCGCTTCCTGGCGAGCCGGGGCATTGCCTTTGCGGTCGCCGATACCCGCGAGCAGCCGCCGGAACTGGAAACCCTGCGCCGTGATTACCCGCAGGTGGAAGTGCGCTGTGGTGAACTGGACGTGGACTTCCTGTGCCGCGCCAACGAGCTGTACGTGAGCCCCGGCCTGGCCTTGGCCACGCCGGCCTTGCAGCAGGCTGCCGCGCGTGGCGTGAAGCTGTCTGGCGACATAGAGCTGTTTGCTCGCCATGCCAAGGCGCCGATCGTTGCCATCAGTGGTTCCAACGCCAAGAGCACCGTCACGACGCTGGTCGGTGAAATGGCCGCCAAGGCCGGCAAACGCGTGGCCGTGGGCGGTAACCTCGGTACCCCGGCACTCGACCTGCTGGCCGAT  >  AE015451/1520751‑1521211

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.