New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 1535168	71 (1.030)	6 (0.090)	6/320	NT	8.6%	coding (177/1218 nt)	argJ	Glutamate N‑acetyltransferase/Amino‑acid acetyltransferase
	?	AE015451	= 1535239	61 (0.940)					coding (248/1218 nt)	argJ	Glutamate N‑acetyltransferase/Amino‑acid acetyltransferase

TTGTGTCGCGATGGGGTGCGAAGCGGCCCCTTTTTCGACATCATCGTTTTTTCTAGGAGCGCTCTAATGGCTGTTGGTCTTGGTCCTTTGCCCACCCTGCACCCGGTTCCGGGTTTTGAACTCGGTATCGCTTCTGCCGGTATCAAGCGCCCGGGGCGCAAGGATGTGGTGGTCATGCGCTGTGCCGAAGGCTCCAGCGTGGCTGGCGTGTTCACCCTCAACGCCTTCTGCGCGGCGCCGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1534926‑1535168 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccggtgCCGGCGTTGGCGTTACCCGTGTTGGTCAGCAGGTAGCGCACGGTGCCCTGTACACGCTGTTTGGACAGGATCACCGGCGCCGCGCAGAAGGCGTTGAGGGTGAACACGCCAGCCACGCTGGAGCCTTCGGCACAGCGCATGACCACCACATCCTTGCGCCCCGGGCGCTTGATACCGGCAGAAGCGATACCGAGTTCAAAACCCGGAACCGGGTGCAGGGTGGGCAAAGGACCA  <  AE015451/1535239‑1535006                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TTGTGTCGCGATGGGGTGCGAAGCGGCCCCTTTTTCGACATCATCGTTTTTTCTAGGAGCGCTCTCATGGCTGTTGGTCTTGGTCCTTTGCCCACCCTGCACCCGGTTCCGGGCTTTGAACTCGGTATCGCTTCTGCCGGTTTCAAGCGCCCGGGGCGCAAGGATGTGGTGGTCATGCGCTGTGCCGAAGGCTCCAGCGTGGCTGGCGTGTTCACCCTCACCGCCTTCTGCGCGG                                                                                                                                                                                                                                                    >  1:1191582/1‑235        GCGATGGGGTGCGAAGCGGCCCCTTTTTCGACATCATCGTTTTTTCTAGGAGCGCTCTAATGGCTGTTGGTCTTGGTCCTTTGCCCACCCTGCACCCGGTTCCGGGTTTTGAACTCGGTATCGCTTCTGCCGGTATCAAGCGCCCGGGGCGCAAGGATGTGGTGGTCATGCGCTGTGCCGAAGGCTCCAGCGTGGCTGGCGTGTTCACCCTCAACGCCTTCTGCGCGGCGCCGGT                                                                                                                                                                                                                                             <  1:1087746/235‑1         CGATGGGGTGCGAAGCGGCCCCTTTTTCGACATCATCGTTTTTTCTAGGAGCGCTCTAATGGCTGTTGGTCTTGGTCCTTTGCCCACCCTGCACCCGGTTCCGGGTTTTGAACTCGGTATCGCTTCTGCCGGTATCAAGCGCCCGGGGCGCAAGGATGTGGTGGTCATGCGCTGTGCCGAAGGCTCCAGCGTGGCTGGCGTGTTCACCCTCAACGCCTTCTGCGCGGCGCCGGT                                                                                                                                                                                                                                             <  2:1102899/234‑1                                                                 TAATGGCTGTTGGTCTTGGTCCTTTGCCCACCCTGCACCCGGTTCCGGGTTTTGAACTCGGTATCGCTTCTGCCGGTATCAAGCGCCCGGGGCGCAAGGATGTGGTGGTCATGCGCTGTGCCGAAGGCTCCAGCGTGGCTGGCGTGTTCACCCTCAACGCCTTCTGCGCGGCGCCG                                                                                                                                                                                                                                               >  1:348892/1‑176                                                                                        TTGCCCACCCTGCACCCGGTTCCGGGTTTTGAACTCGGTATCGCTTCTGCCGGTATCAAGCGCCCGGGGCGCAAGGATGTGGTGGTCATGCGCTGTGCCGAAGGCTCCAGCGTGGCTGGCGTGTTCACCCTCAACGCCTTCTGCGCGGCGCCGGT                                                                                                                                                                                                                                             <  1:1165060/155‑1                                                                                                ccgGCACCCGGTGCCGGGTTGTGAACTCGGTATCGCTTCTGCCGGTATCAAGCGCCCGGGGCGCAAGGATGTGGTGGTCATGCGCTGTGCCGAAGGCTCCAGCGTGGCTGGCGTGTTCACCCTCAACGCCTTCTGCGCGGCGCCGGT                                                                                                                                                                                                                                             <  2:366991/144‑1                                                                                                            TCCGGGTTTTGAACTCGGTATCGCTTCTGCCGGTATCAAGCGCCCGGGGCGCAAGGATGTGGTGGTCATGCGCTGTGCCGAAGGCTCCAGCGTGGCTGGCGTGTTCACCCTCAACGCCTTCTGCGCGGCGCCGGTGCCGGCGTTGGCGTTACCCGTGTTGGTCAGCAGGTAGCGCACGGTGCCCTGTACACGCTGTTTGGACAGGA                                                                                                                                                                      >  1:1185393/1‑206                                                                                                            TCCGGGTTTTGAACTCGGTATCGCTTCTGCCGGTATCAAGCGCCCGGGGCGCAAGGATGTGGTGGTCATGCGCTGTGCCGAAGGCTCCAGCGTGGCTGGCGTGTTCACCCTCAACGCCTTCTGCGCGGCGCCGGTGCCGGCGTTGGCGTTACCCGTGTTGGTCAGCAGGTAGCGCACGGTGCCCTGTACACGCTGTTTGGACAGGA                                                                                                                                                                      <  2:1185390/206‑1                                                                                                                                                                                 GCGCTGTGCCGAAGGGTCCAGCGTGGCTGGCGTGTTCACCCTCAACGCCTTCTGCGCGG                                                                                                                                                                                                                                                    >  2:778462/1‑59                                                                                                                                                                                                      CGTGGCTGGCGTGTTCACCCTCAACGCCTTCTGCGCGGCGCCGGTGCCGGCGTTGGCGTTACCCGTGTTGGTCAGCAGGTAGCGCACGGTGCCCTGTACACGCTGTTTGGACAGGATCACCGGCGCCGCGCAGAAGGCGTTGAGGGTGAACACGCCAGCCACG                                                                                                                       >  2:780254/1‑163                                                                                                                                                                                                                        CCTCAACGCCTTCTGCGCGGCGCCGGTGCCGGCGTTGGCGTTACCCGTGTTGGTCAGCAGGTAGCGCACGGTGACCTGTCAACGCTGTTTGGACAGGATCACCGGCGCCGCGCAGAAGGC                                                                                                                                                >  2:891499/1‑120                                                                                                                                                                                                                               GCCTTCTGCGCGGCGCCGGTGCCGGCGTTGGCGTTACCCGTGTTGGTCAGCAGGTAGCGCACGGTGCCCTGTACACGCTGTTTGGACAGGATCACCGGCGCCGCGCAGAAGGCGTTGAGGGTGAACACGCCAGCCACGCTGGAGCCTTCGGCACAGCGCATGACCACCACATCCTTGCGCCCCGGGCGCTTGATACCGGCAGACGCG                                                  >  1:44177/1‑207                                                                                                                                                                                                                                CCTTCTGCGCGGCGCCGGTGCCGGCGTTGGCGTTACCCGTGTTGGTCAGCAGGTAGCGCACGGTGCCCTGTACACGCTGTTTGGACAGGATCACCGGCGCCGCGCAGAAGGCGTTGAGGGTGAACACGCCAGCCACGCTGGAGCCTTCGGCACAGCGCATGACCACCACATCCTTGCGCCCCGGGCGCTTGATACCGGCAGAAGCGATACCGAGTTCAAAA                                   >  2:414923/1‑221                                                                                                                                                                                                                                    gactggGGCGCCGGTGCCGGCGTTGGCGTTACCCGTGTTGGTCAGCAGGTAGCGCACGGTGCCCTGTACACGCTGTTTGGACAGGATCACCGGCGCCGCGCAGAAGGCGTTGAGGGTGAACACGCCAGCCACGCTGGAGCCTTCG                                                                                                           <  1:203405/139‑1                                                                                                                                                                                                                                           GCGCCGGTGCCGGCGTTGGCGTTACCCGTGTTGGTCAGCAGGTAGCGCACGGTGCCCTGTACACGCTGTTTGGACAGGATCACCGGCGCCGCGCAGAAGGCGTTGAGGGTGAACACGCCAGCCACGCTGGAGCCTTCGGCACAGCGCATGACCACCACATCCTTGCGCCCCGGGCGCTTGATACCGGCAGAAGCGATACCGAGT                                         <  2:1241861/204‑1                                                                                                                                                                                                                                                  TGCCGGCGTTGGCGTTACCCGTGTTGGTCAGCAGGTAGCGCACGGTGCCCTGTACACGCTGTTTGGACAGGATCACCGGCGCCGCGCAGAAGGCGTTGAGGGTGAACACGCCAGCCACGCTGGAGCCTTCGGCACAGCGCATGACCACCACATCCTTGCGCCCCGGGCGCTTGATACCGGCAGAAGCGATACCGAGTTCAAAACCCGGAACCGGGTGCAGGGTGGGCAAAGGACCA  >  1:454160/1‑236                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TTGTGTCGCGATGGGGTGCGAAGCGGCCCCTTTTTCGACATCATCGTTTTTTCTAGGAGCGCTCTAATGGCTGTTGGTCTTGGTCCTTTGCCCACCCTGCACCCGGTTCCGGGTTTTGAACTCGGTATCGCTTCTGCCGGTATCAAGCGCCCGGGGCGCAAGGATGTGGTGGTCATGCGCTGTGCCGAAGGCTCCAGCGTGGCTGGCGTGTTCACCCTCAACGCCTTCTGCGCGGCGCCGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1534926‑1535168 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccggtgCCGGCGTTGGCGTTACCCGTGTTGGTCAGCAGGTAGCGCACGGTGCCCTGTACACGCTGTTTGGACAGGATCACCGGCGCCGCGCAGAAGGCGTTGAGGGTGAACACGCCAGCCACGCTGGAGCCTTCGGCACAGCGCATGACCACCACATCCTTGCGCCCCGGGCGCTTGATACCGGCAGAAGCGATACCGAGTTCAAAACCCGGAACCGGGTGCAGGGTGGGCAAAGGACCA  <  AE015451/1535239‑1535006

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.