New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 2941322	64 (0.930)	4 (0.060)	4/318	NT	6.8%	coding (554/912 nt)	PP_2574	Transcriptional regulator, LysR family
	?	AE015451	= 2941411	50 (0.770)					coding (643/912 nt)	PP_2574	Transcriptional regulator, LysR family

CCGCTGGAACATTCGACCTGGCATTTCTCTATGACCACGACCTGGATGGCACTATCGAGGCCGAGCCGCTGATGCCGCCGCAGAAGCCCTATGTGCTGCTACCCGAGAACCACCGCTTTGCCAGCCAGGCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2941190‑2941322 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaggcccaTCTCGTTGAACAAGCTGACAAAGTACGTGCGGCTAGGGGCCACGTCCAGCAGGATCATCGGCTCCGGGCACAGGTCGCGCAGCGAGACCTGGGCCTGGCTGGCAAAGCGGTGGTTCTCGGGTAGCAGCACATAGGGCTTCTGCGGCGGCATCAGCGGCTCGGCCTCGATAGTGCCATCCAGGTCGTGGTCATAGAGAAATGCCAGGTCGAATGTTCCAGCGGTCAGGCC  <  AE015451/2941411‑2941183                                                                                                                                                                                                                                                                                                                                                                            CCGCTGGAACAGTCGACCTGGCATTTCTCTATGACCACGACCTGGATGGCACTATCGAGGCCGAGCCGCTGATGCCGCCGCAGAACCCCTATGTGCTGCTACCCGAGAACCCCCGCTTTGCCAG                                                                                                                                                                                                                                                >  2:326100/1‑124                                                          AGGCCGAGCCGCTGATGCCGCCGCAGAAGCCCTATGTGCTGCTACCCGAGAACCACCGCTTTGCCAGCCAGGCCCATCTCGTTGAACAAGCTGACAAAGTACGTGCGGCTAGGGGCCACGTCCAGCAGGATCATCGGCTCCGGGCACAGG                                                                                                                                                             <  1:1082270/150‑1                                                          AGGCCGAGCCGCTGATGCCGCCGCAGAAGCCCTATGTGCTGCTACCCGAGAACCACCGCTTTGCCAGCCAGGCCCATCTCGTTGAACAAGCTGACAAAGTACGTGCGGCTAGGGGCCACGTCCAGCAGGATCATCGGCTCCGGGCACAGG                                                                                                                                                             >  2:1082267/1‑150                                                                                  AGAAGCCCTATGTGCTGCTACCCGAGAACCACCGCTTTGCCAGCCAGGCCCATCTCGTTGAACAAGCTGACAAAGTACGTGCGGCTAGGGGCCACGTCCAGCAGGTTCATCAGCTCCGGGCACCGGTCGCGCAGCGAGACGTGGGCCTGGCTGGCCAAGCGGTGGTTCTCGGGTAGCAG                                                                                                        >  1:916177/1‑179                                                                                                                   GCTTTGCCAGCCAGGCCCATCTCGTTGAACAAGCTGACAAAGTACGTGCGGCTAGGGGCCACGTCCAGCAGGATCATCGGCTCCGGGCACAGGTCGCGCAGCGAGACCTGGGCCTGGCTGGCAAAGCGGTGGTTCTCGGGTAGCAGCACATAGGGCTTCTGCGGCGGCATCAGCGGCTCGGCCTCGATAGTGCCATCCAGGTCGTGGTCATAGAGAAATGCCAGGTCGAATGTTC               >  1:1162008/1‑235                                                                                                                          gcGCCAGGCCCATCTCGTTGAACAAGCTGACAAAGTACGTGCGGCTAGGGGCCACGTCCAGCAGGATCAGCGGCTCCGGGCACAGGTCGCGCAGCGAGACCTGGGCCTGGCTGGCAAAGCGGTGGTTCTCGGGTAGCAGCACATAGGGCTTCTGCGGCGGCATCAGCG                                                                           <  2:145402/166‑1                                                                                                                                 GCCCATCTCGTTGAACAAGCTGACAAAGTACGTGCGGCTAGGGGCCACGTCCAGCAGGATCATCGGCTCCGGGCACAGGTCGCGCAGCGAGACCTGGGCCTGGCTGGCAAAGCGGTGGTTCTCGGGTAGCAGCACATAGGGCTTCTGCGGCGGCATCAGCGGCTCGGCCTCGATAGTGCCATCCAGGTCGTGGTCATAGAGAAATGCCAGGTCGAATGTTCCAGCGGTCAGGCC  >  2:738300/1‑234                                                                                                                                                                                                                                                                                                                                                                            CCGCTGGAACATTCGACCTGGCATTTCTCTATGACCACGACCTGGATGGCACTATCGAGGCCGAGCCGCTGATGCCGCCGCAGAAGCCCTATGTGCTGCTACCCGAGAACCACCGCTTTGCCAGCCAGGCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2941190‑2941322 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaggcccaTCTCGTTGAACAAGCTGACAAAGTACGTGCGGCTAGGGGCCACGTCCAGCAGGATCATCGGCTCCGGGCACAGGTCGCGCAGCGAGACCTGGGCCTGGCTGGCAAAGCGGTGGTTCTCGGGTAGCAGCACATAGGGCTTCTGCGGCGGCATCAGCGGCTCGGCCTCGATAGTGCCATCCAGGTCGTGGTCATAGAGAAATGCCAGGTCGAATGTTCCAGCGGTCAGGCC  <  AE015451/2941411‑2941183

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.