New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3070742 =	75 (1.090)	5 (0.080)	4/324	NT	6.9%	intergenic (+310/‑44)	aldB‑II/pqqD‑II	aldehyde dehydrogenase/coenzyme PQQ synthesis protein D
	?	AE015451	3070765 =	63 (0.960)					intergenic (+333/‑21)	aldB‑II/pqqD‑II	aldehyde dehydrogenase/coenzyme PQQ synthesis protein D

GAGGACCCAGCCGGCACTGGCATTGAGCTCGATGATGCCCCCGGCGTACAACAGCACGTGGCAAGCCTTCCGTGGCTCCCAGTCCAGGCGCAAGCCTCGCCCCAAGGCAAGGGCCTGCTGGCGATCAATCAGGTTCACAGGCGCATACTCCAGGAGGATCCGGCCACCGTGGCGATGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3070923‑3070742 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccggATCCTCCTGGAGTATGCGCCTGTGAACCTGATTGATCGCCAGCAGGCCCTTGCCTTGGGGCGAGGCTTGCGCCTGGACTGGGAGCCACGGAAGGCTTGCCACGTGCTGTTGTACGCCGGGGGCATCATCGAGCTCAATGCCAGTGCCGGCTGGGTCCTCGAGCTGCTGGACGGCCACAGTACCGTGGCAACGGTCATCGACCGCCTGGCACAACGCTTCCCCAATGT  >  AE015451/3070765‑3070991                                                                                                                                                                                                                                                                                                                                                                                                                           GAGGACCCAGCCGGCACTGGCATTGAGCTCGATGATGCCCCCGGCGTACAACAGCACGTGGCAAGCCTTCCGTGGCTCCCAGTCCAGGCGCAAGCCTCGCCCCAAGGCAAGGGCCTGCTGGCGATCAATCAGGTTCACAGGCGCATACTCCAGGAGGATCCGGCCACCGTGGCGATGGCCGG                                                                                                                                                                                                                                     <  1:1136224/182‑1                           GCTCGATGATGCCCCCGGCGTACAACAGCACGTGGCAAGCCTTCCGTGGCTCCCAGTCCAGGCGCAAGCCTCGCCCCAAGGCAAGGGCCTGCTGGCGATCAATCAGCTTCACAGGCGCATACTCCAGGAGGATCCGGCCACCGTGGCGATGGCCGG                                                                                                                                                                                                                                     <  2:1104308/156‑1                              CGATGATGCCCCCGGCGTACAACAGCACGTGGCAAGCCTTCCGTGGCTCCCAGTCCAGGCGCAAGCCTCGCCCCAAGGCAAGGGCCTGCTGGCGATCAATCAGGTTCACAGGCGCATACTCCAGGAGGATCCGGCCACCGTGGCGATGGCC                                                                                                                                                                                                                                       <  2:53238/151‑1                                                               AAGCCTTCCGTGGCTCCCAGTCCAGGCGCAAGCCTCGCCCCAAGGCAAGGGCCTGCTGGCGATCAATCAGGTTCACAGGCGCATACTCCAGGAGGATCCGGCCACCGTGGCGATGGCCGGATCCTCCTGGAGTATGCGCCTGTGAACCTGATTGATCGCCAGCAGG                                                                                                                                                                                       <  1:1223271/166‑1                                                               AAGCCTTCCGTGGCTCCCAGTCCAGGCGCAAGCCTCGCCCCAAGGCAAGGGCCTGCTGGCGATCAATCAGGTTCACAGGCGCATACTCCAGGAGGATCCGGCCACCGTGGCGATGGCCGGATCCTCCTGGAGTATGCGCCTGTGAACCTGATTGATCGCCAGCAGG                                                                                                                                                                                       >  2:1223268/1‑166                                                                                                       CAAGGCAAGGGCCTGCTGGCGATCAATCAGGTTCACAGGCCCATACTTCAGGAGGCTCCGTCCACCGTGTCGATGGCCG                                                                                                                                                                                                                                      >  2:7281/1‑79                                                                                                                                           AGGCGCCTACTCCGGGAGGGTGCGGCCACCGTGGCGATGGCCGGATCGTCCTGGAGTATGCGCCTGTGGACCTGATTGATCGCCAGCAGGCCCTTGCCTTGGGGCGAGGCTTG                                                                                                                                                                <  2:54279/113‑1                                                                                                                                           AGGCGCATACTCCAGGAGGATCCGGCCACCGTGGCGATGGCCGGATCCTCCTGGAGTATGCGCCTGTGAACCTGATTGATCGCCAGCAGGCCCTTGCCTTGGGGCGAGGCTTGCGCCTGGACTGGGAGCCA                                                                                                                                              <  2:1225486/131‑1                                                                                                                                              CGCATACTCCAGGTGTATCCGGCCACATTGGCGATGGCCGGATCCTCCTGGAGTATGCGCCTGTGAACCTGATTGATCGCCAGCAGG                                                                                                                                                                                       <  1:75556/87‑1                                                                                                                                                                                 GGCCGGATCCTCCTGGAGTATGCGCCTGTGAACCTGATTGATCGCCAGCAGGCCCTTGCCTTGGGGCGAGGCTTGCGCCTGGACTGGGAGCCACGGAAGGCTTGCCACGTGCTGTTGTACGCCGGGGGCATCATCGAGCTCAATGCCAGTGCCGGCTGGGTCCTCGAGCTGCTGGACGGCCACAGTACCGTGGCAACGGTCATCGACCGCCTGGCACAACGCTTCCCCAATGT  <  2:1128637/233‑1                                                                                                                                                                                     GGATCCTCCTGGAGTATGCGCCTGTGAACCTGATTGATCGCCAGCAGGCCCTTGCCTTGGGGCGAGGCTTGCGCCTGGACTGGGAGCCACGGAAGGCTTGCCACGTGCTGTTGTACGCCGGG                                                                                                             >  2:298190/1‑122                                                                                                                                                                                                                                                                                                                                                                                                                           GAGGACCCAGCCGGCACTGGCATTGAGCTCGATGATGCCCCCGGCGTACAACAGCACGTGGCAAGCCTTCCGTGGCTCCCAGTCCAGGCGCAAGCCTCGCCCCAAGGCAAGGGCCTGCTGGCGATCAATCAGGTTCACAGGCGCATACTCCAGGAGGATCCGGCCACCGTGGCGATGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3070923‑3070742 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccggATCCTCCTGGAGTATGCGCCTGTGAACCTGATTGATCGCCAGCAGGCCCTTGCCTTGGGGCGAGGCTTGCGCCTGGACTGGGAGCCACGGAAGGCTTGCCACGTGCTGTTGTACGCCGGGGGCATCATCGAGCTCAATGCCAGTGCCGGCTGGGTCCTCGAGCTGCTGGACGGCCACAGTACCGTGGCAACGGTCATCGACCGCCTGGCACAACGCTTCCCCAATGT  >  AE015451/3070765‑3070991

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.