New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3704021	62 (0.900)	4 (0.060)	3/320	NT	7.7%	coding (1981/2055 nt)	paaZ	oxepin‑CoA hydrolase/3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase
	?	AE015451	= 3704222	37 (0.570)					coding (1780/2055 nt)	paaZ	oxepin‑CoA hydrolase/3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase

CAACGGTTTCAGATGCCTGAATTCTTCACTGCAGCCAGGTACGTGCATCGATCCCAAGTGCCTTGAGCACCTACCGGCCTCTTCGCGGGTGAACCCGCTCCTACGAGGGAGCTGTGCAGTGCCGGTCAGAGACGGCTTGCCCGAGAAGAGGCCAGTGGCTTCTACACATCATGCTGGTTTTTTCAGCACCAAGGTCAGGATGTCATAGCTGGCCACCAATTCACCCAGCTGATTGGTTACTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3703779‑3704021 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggttacttcGTACTGTCGGCAGCGGCCGGGCTGTTCGTGTCGCCCGGCGCCGGACCGGTATTGGCCAACTATGGGCTGGACACCCTGCGCTTCATCAACCCGGTGGGCATTGGCGATACCATCCAGGCGCGCCTGACCTGCAAGCGCAAGATCGACCAGGGCAAGACCAGCCCGCTGGGGCAGCCGCAGGGGGTGGTGGCGTGGGATGTGGAAGTAACCAATCAGCTGGGTGAATTGG  <  AE015451/3704222‑3703994                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CAACGGTTTCAGATGCCTGAATTCTTCACTGCAGCCAGGTACGTGCATCGATCCCAAGTGCCTTGAGCACCTACCGGCCTCTTCGCGGGTGAACCCGCTCCTACGAGGGAGCTGTGCAGTGCCGGTCAGAGACGGCTTGCCCGAGAAGAGGCCAGTGGCTTCTACACATCATGCTGGTTTTTTCAGCACCAAGGTCAGGATGTCATAGCTGGCCACCAATTCACCCAGCTGATTGG                                                                                                                                                                                                                                              <  1:677117/236‑1          CAGATGCCTGAATTCTTCACTGCAGCCAGGTACGTGCATCGATCCCAAGTGCCTTGAGCACCTACCGGCCTCTTCGCGGGTGAACCCGCTCCTACGAGGGAGCTGTGCAGTGCCGGTCAGAGACGGCTTGCCCGAGAAGAGGCCAGTGGCTTCTACACATCATGCTGGTTTTTTCAGCACCAAGGTCAGGATGTCATAGCTGGCCACCAATTCACCCAGCTGATTGGTTACTT                                                                                                                                                                                                                                        <  2:537250/233‑1                                                     CCCAAGTGCCTTGAGCACCTACCGGCCTCTTCGCGGGTGAACCCGCTCCTACGAGGGAGCTGTGCAGTGCCGGTCAGAGACGGCTTGCCCGAGAAGAGGCCAGTGGCTTCTACACATCATGCTGGTTTTTTCAGCACCAAGGTCAGGATGTCATAGCTGGCCACCAATTCACCCAGCTGATTGGTTA                                                                                                                                                                                                                                           <  1:805882/187‑1                                                     CCCAAGTGCCTTGAGCACCTACCGGCCTCTTCGCGGGTGAACCCGCTCCTACGAGGGAGCTGTGCAGTGCCGGTCAGAGACGGCTTGCCCGAGAAGAGGCCAGTGGCTTCTACACATCATGCTGGTTTTTTCAGCACCAAGGTCAGGATGTCATAGCTGGCCACCAATTCACCCAGCTGATTGGTTA                                                                                                                                                                                                                                           >  2:805879/1‑187                                                                gGAGCACCTACCGGCCTCTTCGCGGGTGAACCCGCTCCTACGAGGGAGCTGTGCAGTGCCGGTCAGAGACGGCTTGCCCGAGAAGAGGCCAGTGGCTTCTACACATCATGCTGGTTTTTTCAGCACCAAGGTCAGGATGTCATAGCTGGCCACCAATTCACCCAGCTGATTGG                                                                                                                                                                                                                                              <  2:380932/172‑1                                                                                    CGCGGGTTAACCCGCTCCTACGATGGATCTTTGTAGTGCCGGTCAGAGACGGCTTGCCCGAGAAGAGGCCAGTGGCTTCTACACATCATGCTGGTTTTTTCAGCACCAAGGTCAGGATGTCATAGCTGGCCACCAATTCACCCAGCTGATTGG                                                                                                                                                                                                                                              <  2:913348/153‑1                                                                                          TGAACCCGCTCCTACGAGGGAGCTGTGCAGTGCCGGTCAGAGACGGCTTGCCCGAGAAGAGGCCAGTGGCTTCTACACATCATGCTGGTTTTTTCAGCACCAAGGTCAGGATGTCATAGCTGGCCACCAATTCACCCAGCTGATTG                                                                                                                                                                                                                                               <  1:512062/146‑1                                                                                          TGAACCCGCTCCTACGAGGGAGCTGTGCAGTGCCGGTCAGAGACGGCTTGCCCGAGAAGAGGCCAGTGGCTTCTACACATCATGCTGGTTTTTTCAGCACCAAGGTCAGGATGTCATAGCTGGCCACCAATTCACCCAGCTGATTG                                                                                                                                                                                                                                               >  2:512059/1‑146                                                                                                                                                                    ACACATCATGCTGGTTTTTTCAGCACCAAGGTCAGGATGTCATAGCTGGCCACCAATTCACCCAGCTGATTGGTTACTTCGTACTGTCGGCAGCGGCCGGGCTGTTCGTGTCGCCCGGCGCCGGACCGGTATTGGCCAACTATGGGCTGGACACCCTGCGCTTCATCAACCCGGTGGGCATTGGCGATACCATCCAGGCGCGCCTGACCTGCAAGCGCAAGATCG                                                                                      >  1:999504/1‑225                                                                                                                                                                    ACACATCATGCTGGTTTTTTCAGCACCAAGGTCAGGATGTCATAGCTGGCCACCAATTCACCCAGCTGATTGGTTACTTCGTACTGTCGGCAGCGGCCGGGCTGTTCGTGTCGCCCGGCGCCGGACCGGTATTGGCCAACTATGGGCTGGACACCCTGCGCTTCATCAACCCGGTGGGCATTGGCGATACCATCCAGGCGCGCCTGACCTGCAAGCGCAAGATCG                                                                                      <  2:999501/225‑1                                                                                                                                                                    ACACATCATGCTGGTTTTTTCAGCACCAAGGTCAGGATGTCATAGCTGGCCACCAATTCACCCAGCTGATTGGTTACTTCGTACTGTCGGCAGCGGCCGGGCTGTTCGTGTCGCCCGGCGCCGGACCGGTATTGGCCAACTATGGGCTGGACACCCTGCGCTTCATCAACCCGGTGGGCATTGGCGATACCATC                                                                                                                     >  1:614207/1‑194                                                                                                                                                                                        CAGCACCAAGGTCAGGATGTCATAGCTGGCCACCAATTCACCCAGCTGATTGGTTACTTCGTACTGTCGGCAGCGGCCGGGCTGTTCGTGTCGCCCGGCGCCGGACCGGTATTGGCCAACTATGGGCTGGACACCCTGCGCTTCATCAACCCGGTGGGCATTGGCGATACCATCCAGGCGCGCCTGACCTGCAA                                                                                                 <  2:614204/194‑1                                                                                                                                                                                                                                             TTACGTCGTACTGTCGGCAGCGGCCGGGCTGTTCGTGTCGCCCGGCGCCGGACCGGTATTGGCCAACTATGGGCTGGACACCCTGCGCTTCATCAACCCGGTGGGCATTGGCGATACCATCCAGGCGCGCCTGACCTGCAAGCGCAAGATCGACCAGGGCAAGACCAGCCCGCTGGGGCAGCCGCAGGGGGTGGTGGCGTGGGATGTGGAAGTAACCAATCAGCTGGGTGAATTGG  <  1:262308/236‑1                                                                                                                                                                                                                                                   CGTACTGTCGGCAGCGGCCGGGCTGTTCGCGTCGCCCGGCGCCGGACCGGTATTGGCCAACTATGGGCTG                                                                                                                                                                  >  2:369411/1‑70                                                                                                                                                                                                                                                   CGTACTGTCGGCAGCGGCCAGGCTGTTCGTGTCGCCCGGCGCCGGACCGGTATTGGCCAACTATGGGCTGGACACCCTGCGCTTGATCAACCCGGTGGGCATTGGCGATACCATCCAGGCGCGCCTGACCTGCAAGCGCAAGATCGA                                                                                     >  2:1204617/1‑147                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CAACGGTTTCAGATGCCTGAATTCTTCACTGCAGCCAGGTACGTGCATCGATCCCAAGTGCCTTGAGCACCTACCGGCCTCTTCGCGGGTGAACCCGCTCCTACGAGGGAGCTGTGCAGTGCCGGTCAGAGACGGCTTGCCCGAGAAGAGGCCAGTGGCTTCTACACATCATGCTGGTTTTTTCAGCACCAAGGTCAGGATGTCATAGCTGGCCACCAATTCACCCAGCTGATTGGTTACTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3703779‑3704021 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggttacttcGTACTGTCGGCAGCGGCCGGGCTGTTCGTGTCGCCCGGCGCCGGACCGGTATTGGCCAACTATGGGCTGGACACCCTGCGCTTCATCAACCCGGTGGGCATTGGCGATACCATCCAGGCGCGCCTGACCTGCAAGCGCAAGATCGACCAGGGCAAGACCAGCCCGCTGGGGCAGCCGCAGGGGGTGGTGGCGTGGGATGTGGAAGTAACCAATCAGCTGGGTGAATTGG  <  AE015451/3704222‑3703994

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.