| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | = 4189269 | 75 (1.090) | 4 (0.060) | 4/322 | NT | 5.1% | coding (532/819 nt) | PP_5611 | putative transcriptional regulator |
| ? | AE015451 | = 4189277 | 76 (1.160) | coding (540/819 nt) | PP_5611 | putative transcriptional regulator | |||||
GCTGTACTCGAGGCAACTTTGAAACCTATGATCTCTCGCGCATCGTTCGGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/4189216‑4189269‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgggccgCAGATGCTCGGCCCGAACGATGCGCGAGAGATCATAGGTTTCAAAGTTGCCTCGAGTACAGCACCAACACCTGACAAGCCATCGAGTGCCATCTTGAGTGAGCGAATGAGGTGTAACCTCAATCTCATCACCCTCGGGGTTATCCAAGGATCTATAAGTCACCTTGATCGACTGGTAGCTGCGAATCGACTGTAAAACCAATCCCACGACCTCCGCATCCAACTTTCGTGAT < AE015451/4189277‑4189046 GCTGTACTCGAGGCAACTTTGAAACCTATGATCTCTCGCGCATCGTTCGGGCCGCAGATGCTCGGCCCGAACGATGCGCGAGAGATCATAGGTTTCAAAGTTGCCTCGAGTACAGCACCAACACCTGACAAGCCATCGAGTGCCATCTTGAGTGAGCGAATGAGGTGTAACCTCAATCTCATCACCCTCGGGGTTATCCAAGGA < 1:743967/204‑1GCTGTACTCGAGGCAACTTTGAAACCTATGATCTCTCGCGCATCGTTCGGGCCGCAGATGCTCGGCCCGAACGATGCGCGAGAGATCATAGGTTTCAAAGTTGCCTCGAGTACAGCACCAACACCTGACAAGCCATCGAGTGCCATCTTGAGTGAGCGAATGAGGTGTAACCTCAATCTCATCACCCTCGGGGTTATCCAAGGA > 2:743964/1‑204 TCGAGGCAACTTTGAAACCTATGATCTCTCGCGCATCGTTCGGGCCGCAGATGCTCGGCCCGAACGATGCGCGAGAGATCATAGGTTTCAAAGTTGCCTCGAGTACAGCACCAACACCTGACAAGCAATCGAGTGCCATCTTGAGTGA > 2:1143992/1‑148 GATCTCTCGCGTGTCGTGCGGGCCGCAGATGCTCGGCCCGAACGATGCGCGAGAGATCATAGGTTTCAAAGTTGCCTCGAGTACAGCACCAACACCTGACAAGCCATCGAGTGCCATCTTGAGTGAGCGAATGAGGTGTAACCTCAATCT < 2:325435/150‑1 CGGGCCGCAGATGCTCGGCCCGAACGATGCGCGAGAGATCATAGGTTTCAAAGTTGCCTCGAGTACAGCACCAACACCTGACAAGCCATCGAGTGCCATCTTGAGTGAGCGAATGAGGTGTAACCTCAATCTCATCACCCTCGGGGTTATCCAAGGATCT > 2:922092/1‑160 GGGCCGCAGATGCTCGGCCCGAACGATGCGCGAGAGATCATAGGTTTCAAAGTTGCCTCGAGTACAGCACCAACACCTGACAAGCCATCGAGTGCCATCTTGAGTGAGCGAATGAGGTGTAACCTCAATCTCATCACCCTCGGGGTTATCCAAGGATCTATAAGTCACCTTGATCGACTGGTAGCTGC > 2:506539/1‑188 CGCAGATGCTCGGCCCGAACGATGCGCGAGAGATCATAGGTTTCAAAGTTGCCTCGAGTACAGCACCAACACCTGACAAGCCATCGAGTGCCATCTTGAGTGAGCGAATGAGGTGTAACCTCAATCTCATCACCCTCGGGGTTATCCAAGGATCTATAAGTCACCTTGATCGACTGGTAGCTGCGAATCGACTGTAAAACCAATCCCACGACCTCCGCATCCAACTTTCGTGAT > 1:977551/1‑234 CGCAGATGCTCGGCCCGAACGATGCGCGAGAGATCATAGGTTTCAAAGTTGC > 1:510695/1‑52 CGCAGATGCTCGGCCCGAACGATGCGCGAGAGATCATAGGTTTCAAAGTTGC < 2:510692/52‑1 GCTGTACTCGAGGCAACTTTGAAACCTATGATCTCTCGCGCATCGTTCGGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/4189216‑4189269‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgggccgCAGATGCTCGGCCCGAACGATGCGCGAGAGATCATAGGTTTCAAAGTTGCCTCGAGTACAGCACCAACACCTGACAAGCCATCGAGTGCCATCTTGAGTGAGCGAATGAGGTGTAACCTCAATCTCATCACCCTCGGGGTTATCCAAGGATCTATAAGTCACCTTGATCGACTGGTAGCTGCGAATCGACTGTAAAACCAATCCCACGACCTCCGCATCCAACTTTCGTGAT < AE015451/4189277‑4189046 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |