New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4192478	73 (1.060)	4 (0.070)	4/298	NT	5.6%	intergenic (+84/‑565)	PP_5613/PP_5614	protein of unknown function/protein of unknown function
	?	AE015451	= 4192458	71 (1.170)					intergenic (+64/‑585)	PP_5613/PP_5614	protein of unknown function/protein of unknown function

TTGCTCCGGACGCTCTGATTGCCCGTTACGTCTTTCTGCTTTAACGGTCATCCAAGCTGGTCGCTTGGGCTTGGATCAGTACGAGTTTCCCGACCTAGAGCCTTTTGACCCCGAACAGTATTCGCCAGATGACATTCACTCGCTCTTCTACCCAAATGGAATCTTGTGAGCACGGCATCCAATAGACCCAGCGTCAAAGTAAGCGTACGCTGAAAACACCTTGCGTAGGTCAGGCCGCATCCATGGATGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4192226‑4192478 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgcatccatggatgcggcCTGACCTACGCAAGGTGTTTTCAGCGTACGCTTACTTTGACGCTGGGTCTATTGGATGCCGTGCTCACAAGATTCCATTTGGGTAGAAGAGCGAGTGAATGT  <  AE015451/4192458‑4192357                                                                                                                                                                                                                                                                                                                                                                     TTGCTCCGGACGCTCTGATTGCCCGTTACGTCTTTCTGCTTTAACGGTCATCCAAGCTGGTCGCTTGGGCTTGGATCAGTACGAGTTTCCCGACCTAGAGCCTTTTGACCCCGAACAGTATTCGCCAGATGACATTCACTCGCTCTTCTACCCAAATGGAATCTTGTGAGCACGGCATCCAATAGACCCAGCGTCAAAGTAAGCGTACGCTGAAAACACCTTGCGTAGGTCAGGCC                                                                                                                         <  1:250947/236‑1                                            ACGGTCATCCAAGCTGGTCGCTTGGGCTTGGATCAGTACGAGTTTCCCGACCTAGAGCCTTTTGACCCCGAACAGTATTCGCCAGATGACATTCACTCGCTCTTCTACCCAAATGGAATCTTGTGAGCACGGCATCCAATAGACCCAGCGTCAAAGTAAGCGTACGCTGAAAACACCTTGCGTAGGTCAGGCCGCATCCATGGATGCGGCCTGACCTACGCAAGGTGTTTTCA                                                                                 <  2:409919/233‑1                                                                                                                                      ATTCACTCGCTCTTCTACCCAAATGGAATCTTGTGAGCACGGCATCCAATAGACCCAGCGTCAAAGTAAGCGTACGCTGAAAACACCTTGCGTAGGTCAGGCCGCATCCATGGATGC                                                                                                           <  2:312127/117‑1                                                                                                                                              GCTCTTCTACCCAAATGGAATCTTGTGAGCACGGCATCCAATAGACCCAGCGTCAAAGTAAGCGTACGCTGAAAACACCTTGCGTAGGTCAGGCCGCATCCATGGATGCGGCCTGACCTACGCAAGGTGTTTTCAGCGTACGCTTACTTTGACGCTGGGTCTATTGGATGCCGTGCTCACAAca                                >  2:624601/1‑182                                                                                                                                               CTCTTCTACCCAAATGGAATCTTGGGAGCACGGCATCCAATAGACCCAGCGTCAAAGTAAGCGTACGCTGAAAACACCTTGCGTAGGTCAGGCCGCATCCATGGATGCGGCCTGACCTACGCAAGGTGTTTTCAGCGTACGCTTACTTTGACGCTGGGTCTATTGGATGCCGTGCTCACAAGATTC                             <  1:883837/186‑1                                                                                                                                                                                               GCGTCAAAGTAAGCGTACGCTGAAAACACCTTGCGTAGGTCAGGCCGCATCCATGGATGCGGCCTGACCTACGCAAGGTGTTTTCAGTGTACGCTTACTTTGACGCTGGGTCTATTGGATGCCGTGCTCACAAGATTCCAGTTGGGTAGAAGAGCGAG         >  1:907333/1‑158                                                                                                                                                                                                                                                           GGCCTGACCTACGCAAGGTGTTTTCAGCGTACGCTTACTTTGACGCTGGGTCTATTGG                                                 >  1:772342/1‑58                                                                                                                                                                                                                                                           GGCCTGACCTACGCAAGGTGTTTTCAGCGTACGCTTACTTTGACGCTGGGTCTATTGG                                                 <  2:772339/58‑1                                                                                                                                                                                                                                                            GCCTGACCTACGCAAGGTGTTTTCAGCGTACGCTTACTCTGACGCTGGGTCTATTGGATGCCGTGCTCACAAGATTCCATTTGGGTAGAAGAGCGAGTGAATGT  <  2:632271/104‑1                                                                                                                                                                                                                                                                                                                                                                     TTGCTCCGGACGCTCTGATTGCCCGTTACGTCTTTCTGCTTTAACGGTCATCCAAGCTGGTCGCTTGGGCTTGGATCAGTACGAGTTTCCCGACCTAGAGCCTTTTGACCCCGAACAGTATTCGCCAGATGACATTCACTCGCTCTTCTACCCAAATGGAATCTTGTGAGCACGGCATCCAATAGACCCAGCGTCAAAGTAAGCGTACGCTGAAAACACCTTGCGTAGGTCAGGCCGCATCCATGGATGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4192226‑4192478 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgcatccatggatgcggcCTGACCTACGCAAGGTGTTTTCAGCGTACGCTTACTTTGACGCTGGGTCTATTGGATGCCGTGCTCACAAGATTCCATTTGGGTAGAAGAGCGAGTGAATGT  <  AE015451/4192458‑4192357

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.