New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4261401	46 (0.670)	6 (0.090)	6/314	NT	12.0%	coding (1361/2460 nt)	PP_3734	putative ABC transporter, permease protein
	?	AE015451	= 4261493	45 (0.710)					coding (1269/2460 nt)	PP_3734	putative ABC transporter, permease protein

CACGCTGGCCCCGGGCTGCTGCTTGAGCCACTCGACTATCTGCAAGCCTTGGGCCGTGTCCCGCGGGGTGACATACAGGTCGGCGGAGAGGCGCAGGTCAAGCCAACCGACAAACGTCTTGCGAAAACCCTCGGTCATGCTGCCCACGCCAACACTGGCAGCCAGGGCCAGCAAAAGGGCGACCAACGCCAGGCTCAGGGCTGGCAGCTGCTGGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4261184‑4261401 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgctggcggcGGCGCTGCTGTTGCCGGCCTTGCTCGATCAGGTACTGGCCTGGCTGGCGCGTCGTTGCCACCGGCCATTGGCGCAATGGTTCGTGGCTGACAGCCGCCAGCAGCTGCCAGCCCTGAGCCTGGCGTTGGTCGCCCTTTTGCTGGCCCTGGCTGCCA  <  AE015451/4261493‑4261339                                                                                                                                                                                                                                                                                                                                                                                       CACGCTGGCCCCGGGCTGCTGCTTGAGCCACTCGACTATCTGCAAGCCTTGGGCCGTGTCCCGCGGGGTGACATACAGGTCGGCGGAGAGGCGCAGGTCAAGCCAACCGACAAACGTCTTGCGAAAACCCTCGGTCATGCTGCCCACGCCAACACTGGCAGCCAGGGCCAGCAAAAGGGCGACCAACGCCAGGCTCAGGGCTGGCAGCTGCTG                                                                                                                                                                  <  2:578750/213‑1                                                                                      GAGAGGCGCAGGTCAAGCCAACCGACAAACGTCTTGCGAAAACCCTCGGTCATGCTGCCCACGCCAACACTGGCAGCCAGGGCCAGCAAAAGGGCGACCAACGCCAGGCTCAGGGCTGGCAGCTGCTGGCGGCGGCGCTGCTGTTGCCGGCC                                                                                                                                          >  1:771486/1‑152                                                                                      GAGAGGCGCAGGTCAAGCCAACCGACAAACGTCTTGCGAAAACCCTCGGTCATGCTGCCCACGCCAACACTGGCAGCCAGGGCCAGCAAAAGGGCGACCAACGCCAGGCTCAGGGCTGGCAGCTGCTGGCGGCGGCGCTGCTGTTGCCGGCC                                                                                                                                          <  2:771483/152‑1                                                                                                                                                    GCCAACACTGGCAGCCAGGGCCAGCAAAAGGGCGACCAACGCCAGGCTCAGGGCTGGCAGCTGCTGGCGGCGGCGCTGCTGTTGCCGGCCTTGCTCGATCAGGTACTGGCCTGGCTGGCGCGTCGTTGCCACCGGCCATTGGCGCAATGGTTCGTGGCTGACAGCCGCCAGCAGCTGCCAGCCCTGAGCCTGGCGTTGGTCGCCCTTTTGCTGGCCCTGGCTGCCA  >  2:644792/1‑226                                                                                                                                                       AACACTGGCAGCCAGGGCCAGCAAAAGGGCGACCAACGCCAGGCTCAGGGCTGGCAGCTGCTGGCGGCGGCGCTGCTGTTGCCGGCCTT                                                                                                                                        <  1:1006390/89‑1                                                                                                                                                       AACACTGGCAGCCAGGGCCAGCAAAAGGGCGACCAACGCCAGGCTCAGGGCTGGCAGCTGCTGGCGGCGGCGCTGCTGTTGCCGGCCTT                                                                                                                                        >  2:1006387/1‑89                                                                                                                                                            TGGCAGCCAGGGCCAGCAAAAGGGCGACCAACGCCAGGCTCAGGGCTGGCAGCTGCTGGCG                                                                                                                                                               <  1:1191019/61‑1                                                                                                                                                            TGGCAGCCAGGGCCAGCAAAAGGGCGACCAACGCCAGGCTCAGGGCTGGCAGCTGCTGGCG                                                                                                                                                               >  2:1191016/1‑61                                                                                                                                                                           GCAAAAGGGCGACCAACGCCAGGCTCAGGGCTGGCAGCTGCTGGCGGCGGCCCTGCTGTTGCCGGCCTTGCGCGATCAGGTACTGGCCTG                                                                                                                   >  2:109597/1‑90                                                                                                                                                                                                               GCTGCTGGCGGCGGCGCTGCTGTTGCCGGCCTTGCTCGATCAGGTACTGGCCTGGCTGGCGCGTCGTTGCCACCGGCCATTGGCGCAATGGTTCGTGGCTGACAGCCGCCAGCAGCTGCCA                                                >  2:483345/1‑121                                                                                                                                                                                                                 TGCTGGCGGCGGCGCTGCTGTTGCCGGCCTTGCTCGATCAGGTACTGGCCTGGCTGGCGCGTCGTTGCCACCGGCCATTGGCGCAATGGTTCGTGGCTGACAGCCGCCAGCAGCTGCCAGCCCTGAGCCTGGCGTTGGTCGCCCTTTTGCTGGCCCTGG        >  1:1052725/1‑159                                                                                                                                                                                                                                                                                                                                                                                       CACGCTGGCCCCGGGCTGCTGCTTGAGCCACTCGACTATCTGCAAGCCTTGGGCCGTGTCCCGCGGGGTGACATACAGGTCGGCGGAGAGGCGCAGGTCAAGCCAACCGACAAACGTCTTGCGAAAACCCTCGGTCATGCTGCCCACGCCAACACTGGCAGCCAGGGCCAGCAAAAGGGCGACCAACGCCAGGCTCAGGGCTGGCAGCTGCTGGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4261184‑4261401 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgctggcggcGGCGCTGCTGTTGCCGGCCTTGCTCGATCAGGTACTGGCCTGGCTGGCGCGTCGTTGCCACCGGCCATTGGCGCAATGGTTCGTGGCTGACAGCCGCCAGCAGCTGCCAGCCCTGAGCCTGGCGTTGGTCGCCCTTTTGCTGGCCCTGGCTGCCA  <  AE015451/4261493‑4261339

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.