| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | 4642610 = | 63 (0.920) | 5 (0.080) | 5/326 | NT | 7.7% | coding (553/897 nt) | PP_4107 | Transcriptional regulator, LysR family |
| ? | AE015451 | 4642634 = | 59 (0.890) | coding (577/897 nt) | PP_4107 | Transcriptional regulator, LysR family | |||||
CACAGGGTGGTCCCAGGCCACCACCAGCTTGCCTTCGCTCAGCTCTTCGGCCACCAGATAGCGGGGAATCAGGGCTATGCCGCAGCCGGAGATGGCCGCGCGGATACACAGGTAGAACGTGTCGAAGCGCGGCCCGTGGTAGCTGTTCTGGCTATGCAACCCAAGCCCCAGGAACCATTCATGCCAGGCCTCCGGCCGCGACACGCATTGCAACAGGCGGTGCTCAGTCAGCGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/4642846‑4642610‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcctgTTGCAATGCGTGTCGCGGCCGGAGGCCTGGCATGAATGGTTCCTGGGGCTTGGGTTGCATAGCCAGAACAGCTACCACGGGCCGCGCTTCGACACGTTCTACCTGTGTATCCGCGCGGCCATCTCCGGCTGCGGCATAGCCCTGATTCCCCGCTATCTGGTGGCCGAAGAGCTGAGCGAAGGCAAGCTGGTGGTGGCCTGGGACCACCCTGTGGCAAGCAACGGGAGGCACTT > AE015451/4642634‑4642866 CACAGGGTGGTCCCAGGCCACCACCAGCTTGCCTTCGCTCAGCTCTTCGGCCACCAGATAGCGGGGAATCAGGGCTATGCCGCAGCCGGAGATGGCCGCGCGGATACACAGGTAGAACGTGTCGAAGCGCGGCCCGTGGTAGCTGTTCTGGCTATGCAACCCAAGCCCCAGGAACCATTCATGCCAGGCCTCCGGCCGCGACACGCATTGCAACAGGCGGTGCTCAGTCAGCGCCT > 1:417240/1‑236 GCTCAGCTCTTCGGCCACCAGATAGCGGGGAATCAGGGCTATGCCGCAGCCGGAGATGGCCGCGCGGATACACAGGTAGAACGTGTCGAAGCGCGGCCCGTGGTAGCTGTTCTGGCTATGCAACCCAAGCCCCAGGAACCATTCATGCCAGGCCTCCGGCCGCGACACGCATTGCAACAGGCGGTGCTCAGTCAGCGCCTGTTGCAATGCGTGTCGCGGCCGGAGGCCTGGCATG < 1:659677/235‑1 AGCGCGGCCCGTGGTAGCTGTTCTGGCTATGCAACCCAAGCCCCAGGAACCATTCATGCCAGGCCTCCGGCCGCGACACGCATTGCAACAGGCGGTGCTCAGTCAGCGCCTGTTGCAATGCGTGTCGCGGCCGGAGGCCTGGCATGAATGGTTCCTGGGGCTTGGGTTGCAT < 1:318528/172‑1 GCCCGTGGTAGCTGTTCTGGCTATGCAACCCAAGCCCCAGGAACCATTCATGCCAGGCCTCCGGCCGCGACACGCATTGCAACAGGCGGTGCTCAGTCAGCGCCTGTTGCAATGCGTGTCGCGGCCGGAGGCCTGGCATGAATGGTTCCTGGGGCTTGGGT < 1:570580/161‑1 GGTAGCTGTTCTGGCTATGCAACCCAAGCCCCAGGAACCATTCATGCCGGGCCTCCGGCCGCGACGCGCATTGCAACAGGCGGTGCTCAGTCAGCGCCTGTTGCAATGCGTGTCGCGG < 1:1275330/118‑1 AGCCCCAGGAACCATTAATGCCAGGCCTCCGGCCGCGACACGCATTGCAACAGGCGGTGCTCAGTCAGCGCCTGTTGCAATGCGTGTCGCGGCCGGAGGCCTGGCATGAATGGTTCCTGGGGCTTGGGTTGCATAGCCAGAA < 2:953970/142‑1 CGCCTGTTGCAATGCGTGTCGCGGCCGGAGGCCTGGCATGAATGGTTCCTGGGGCTTGGGT < 1:177499/61‑1 GCCTGTTGCAATGCGTGTCGCGGCCGGAGGCCTGGCATGAATGGTTCCTGGGGCTTGGGTTGCATAGCCAGAACAGCTACCACGGGCCGCGCTTCGACACGTTCTACCTGTGTATCCGCGCGGCCATCTCCGGCTGCGGCATAGCCCTGATTCCCCGCTATCTGGTGGCCGAAGAGCTGAGCGAAGGCAAGCTGGTGGTGGCCTGGGACCACCCTGTGGCAAGCAACGGGA < 1:707905/231‑1 GCCTGTTGCAATGCGTGTCGCGGCCGGAGGCCTGGCATGAATGGTTCCTGGGGCTTGGGTCGCATAGCCAGAACAGCTACCACGGGCCGCGCTTCGACACGT < 1:72552/102‑1 TGTTGCAATGCGTGTCGCGGCCGGAGGCCTGGCATGAATGGTTCCTGGGGCTTGGGTTGCATAGCCAGAACAGCTACCACGGGCCGCGCTTCGACACGTTCTACCTGTGTATCCGCGCGGCCATCTCCGGCTGCGGCATAGCCCTGATTCCCCGCTATCTGGTGGCCGAAGAGCTGAGCGAAGGCAAGCTGGTGGTGGCCTGGGACCACCCTGTGGCAAGCAACGGGAGGCACTT > 1:851921/1‑235 GTTGCAATGCGTGTCGCGGCCGGAGGCCTGGCATGAATGGTTCCTGGGGCTTGGGTTGCATAGCCAGAACAGCTACCACGGGCCGCGCTTCGACACGTTCTACCTGTGTATCCGCGCGGCCATCTCCGGCTGCGGCATAGCCCTGATTCCCCGCTATCTGGTGGCCGAAGAGCTGAGCGAAGGCAAGCTGGTGGTGGCCTGGGACCACCCTGTGGCAAGCAACGGGAGGCACTT < 1:494417/234‑1 GTTGCAATGCGTGTCGCGGCCGGAGGCCTGGCATGAATGGTTCCTGGGGCTTGGGTTGCATAGCCAGAACAGCTACCACGGGCCGCGCTTCGACACGTTCTACCTGTGTATCCGCGCGGCCATCTCCGGCTGCGGCATAGCCCTGATTCCCCGCTATCTGGTGGCCGAAGAGCTGAGCGAAGGCAAGCTGGTGGTGGCCTGGGACCACCCTGTGGCAAGCAAC > 1:501345/1‑223 GTTGCAATGCGTGTCGCGGCCGGAGGCCTGGCATGAATGGTTCCTGGGGCTTGGGTTGCATAGCCAGAACAGCTACCACGGGCCGCGCTTCGACACGTTCTACCTGTGTATCCGCGCGGCCATCTCCGGCTGCGGCATAGCCCTGATTCCCCGCTATCTGGTGGCCGAAGAGCTGAGCGAAGGCAAGCTGGTGGTGGCCTGGGACCACCCTGTGGCAAGCAAC < 2:501342/223‑1 GTTGCAATGCGTGTCGCGGCCGGAGGCCTGGCATGAATGGTTCCTGGGGCTTGGGTTGCATAGCCAGAACAGCTACCACGGGCCGCGCTTCG < 1:1183349/92‑1 GTTGCAATGCGTGTCGCGGCCGGAGGCCTGGCATGAATGGTTCCTGGGGCTTGGGTTGCATAGCCAGAACAGCTACCACGGGCCGCGCTTCG > 2:1183346/1‑92 CACAGGGTGGTCCCAGGCCACCACCAGCTTGCCTTCGCTCAGCTCTTCGGCCACCAGATAGCGGGGAATCAGGGCTATGCCGCAGCCGGAGATGGCCGCGCGGATACACAGGTAGAACGTGTCGAAGCGCGGCCCGTGGTAGCTGTTCTGGCTATGCAACCCAAGCCCCAGGAACCATTCATGCCAGGCCTCCGGCCGCGACACGCATTGCAACAGGCGGTGCTCAGTCAGCGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/4642846‑4642610‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcctgTTGCAATGCGTGTCGCGGCCGGAGGCCTGGCATGAATGGTTCCTGGGGCTTGGGTTGCATAGCCAGAACAGCTACCACGGGCCGCGCTTCGACACGTTCTACCTGTGTATCCGCGCGGCCATCTCCGGCTGCGGCATAGCCCTGATTCCCCGCTATCTGGTGGCCGAAGAGCTGAGCGAAGGCAAGCTGGTGGTGGCCTGGGACCACCCTGTGGCAAGCAACGGGAGGCACTT > AE015451/4642634‑4642866 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |