New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	4946072 =	73 (1.060)	3 (0.050)	3/324	NT	4.1%	coding (509/1143 nt)	flhB	flagellin export apparatus, substrate specificity protein
	?	AE015451	4946103 =	69 (1.050)					coding (478/1143 nt)	flhB	flagellin export apparatus, substrate specificity protein
Rejected: Frequency below/above cutoff threshold.

TTAGCGGCTTCCTGTTCTCGGGCAGCTTGCTGCAGCCAAAATTCAGCCGCATGAACCCGCTGTCGGGGATCAAGCGCATGTTCTCGATGCAGGCCCTGACTGAATTGCTCAAGGCGCTGGCCAAGTTCTTCGTGATTCTGGTGGTGGCGGTGGTGGTGCTCTCCGGTGACCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4946246‑4946072 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accgccaCCACCAGAATCACGAAGAACTTGGCCAGCGCCTTGAGCAATTCAGTCAGGGCCTGCATCGAGAACATGCGCTTGATCCCCGACAGCGGGTTCATGCGGCTGAATTTTGGCTGCAGCAAGCTGCCCGAGAACAGGAAGCCGCTAAGCGCGATGGGCGCCACGAAGGAAACCACGAACAGCAGGATCAGCACCGGCTGCACCGCCCATATGGCCATCTTGCCCGAGGCCAGCAGGA  >  AE015451/4946103‑4946336                                                                                                                                                                                                                                                                                                                                                                                                                           TTAGCGGCTTCCTGTTCTCGGGCAGCTTGCTGCAGCCAAACTTCAGCCGCATGAGCCCGCTGTCGGGGATCAAGCGCATGTTCTCGATGCAGGCCCTGACTGAATTGCTCAAGGCGCTGGCCAAGTTCTTCGTGATTCTGGTGGTGGCGGTGGTGGTGCTCTCCGGTGACCGCCACCACCAGAATCACGAAGAACTTGGCCAGCGCCTTGAGCAATTCA                                                                                                                                                                                                <  1:1205330/219‑1                                                          CGCTGTCGGGAATAAAGCGCATGTTCTCGATGCAGGCCCTGACTGAAGTGCTCAAGGCGCTGGCCAAGTTATTCGTGATTCTGGTGGTGGCGGTGGTCGTGCTCTCCGGTGACCGCCACCACCAGAATCACGAAGAACTTGGCCAGCGCCT                                                                                                                                                                                                           <  1:665389/151‑1                                                                                                                   CGCTGGCCAAGTTCTTCGTGATTCTGGTGGTGGCGGTGGTGGTGCTCTCCGGTGACCGCCACCACCGGACTCACGAAGAACTTGGCCAGCGCCTTGAGCAATTCAGTCAGGGCCTGCATCGAGAACATGCGCT                                                                                                                                                                    <  1:501584/133‑1                                                                                                                                                                          CCGCCACCACCAGAATCACGAAGAACTTGGCCAGCGCCTTGAGCAATTCAGTCAGGGCCTGCATCGAGAACATGCGCTTGATCCCCGACAGCGGGTTCATGCGGCTGAATTTTGGCTGCAGCAAGCTGCCCGAGAACAGGAAGCCGCTAAGCGCGATGGGCGCCACGAAGGAAACCACGAACAGCAGGATCAGCACCGGCTGCACCGCCCATATGGCCATC                     >  1:976203/1‑221                                                                                                                                                                              CACCACCAGAATCACGAAGAACTTGGCCAGCGCCTTGAGCAATTCAGTCAGGGCCTGCATCGAGAACATGCGCTTGATCCCCGACAGCGGGTTCATGCGGCTGAATTTTGGCTGCAGCAAGCTGCCCGAGAACAGGAAGCCGCTAAGCGCGATGGGCGCCACGAAGGAAACCACGAACAGCAGGATCAGCACCGGCTGCACCGCCCATATGGCCATCTTGCCCGAGGCCAGCAGGA  <  1:112691/236‑1                                                                                                                                                                              CACCACCAGAATCACGAAGAACTTGGCCAGCGCCTTGAGCAATTCAGTCAGGGCCTGCATCGAGAACATGCGCTTGATCCCCGACAGCGGGTTCATGCGGCTGAATTTTGGCTGCAGCAAGCTGCCCGAGAACAGGAAGCCGCTAAGCGCGATGGGCGCCACGAAGGAAACCACGAACAGCAGGATCAGCACCGGCTGCACCGCCCATATGGCCATCTTGCCCGAGGCC         <  2:1281996/229‑1                                                                                                                                                                                                                                                                                                                                                                                                                           TTAGCGGCTTCCTGTTCTCGGGCAGCTTGCTGCAGCCAAAATTCAGCCGCATGAACCCGCTGTCGGGGATCAAGCGCATGTTCTCGATGCAGGCCCTGACTGAATTGCTCAAGGCGCTGGCCAAGTTCTTCGTGATTCTGGTGGTGGCGGTGGTGGTGCTCTCCGGTGACCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4946246‑4946072 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accgccaCCACCAGAATCACGAAGAACTTGGCCAGCGCCTTGAGCAATTCAGTCAGGGCCTGCATCGAGAACATGCGCTTGATCCCCGACAGCGGGTTCATGCGGCTGAATTTTGGCTGCAGCAAGCTGCCCGAGAACAGGAAGCCGCTAAGCGCGATGGGCGCCACGAAGGAAACCACGAACAGCAGGATCAGCACCGGCTGCACCGCCCATATGGCCATCTTGCCCGAGGCCAGCAGGA  >  AE015451/4946103‑4946336

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.