New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	4960421 =	72 (1.050)	3 (0.050)	3/326	NT	4.1%	coding (50/1779 nt)	fliF	Flagellar M‑ring protein
	?	AE015451	4960435 =	72 (1.090)					coding (36/1779 nt)	fliF	Flagellar M‑ring protein
Rejected: Frequency below/above cutoff threshold.

AGCAAGCCTCGACCCAACTGGCCAACGCGTTCGAAATCGGCAAGAGCGGCGTCGACCTGACTGACGTGATGATCGCTTCGCAAAAGGCCAGCGTGTCGATGCAAGCCATGACCCAGGTACGCAACAAGCTGGTCCAGGCGTACCAGGACATCATGCAGATGCCGGTTTGAGGACGGATGTAACCCATGGCTGAAGCAGTCGTCGAAAACGCCCCCGCCAAAGCTGGCTCGCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4960655‑4960421 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccagcTTTGGCGGGGGCGTTTTCGACGACTGCTTCAGCCATGGGTTACATCCGTCCTCAAACCGGCATCTGCATGAT  >  AE015451/4960435‑4960506                                                                                                                                                                                                                                                                                                                     AGCAAGCCTCGACCCAACTGGCCAACGCGTTCGAAATCGGCAAGAGCGGCGTCGACCTGACTGACGTGATGATCGCTTCGCAAAAGGCCAGCGTGTCGATGCAAGCCATGACCCAGGTACGCAACAAGCTGGTCCAGGCGTACCAGGACATCATGCAGATGCCGGTTTGAGGACGGATGTAACCCATGGCTGAAGCAGTCGTCGAAAACGCCCCCGCCAAAGCTGGCTCGCCAGC                                                                          >  2:611595/1‑235                                                                                                                                        AGGCGTACCAGGACATCATGCAGATGCCGGTTTGAGGACGGATGTAACCCATGGCTGAAGCAGTCGTCGAAAACGCCCCCGCCAAAGCTGGCTCGCCAGCTTTGGCGGGGGCGTTTTCGACGACTGCTTCAGCCATGGGTT                                 >  1:719014/1‑141                                                                                                                                        AGGCGTACCAGGACATCATGCAGATGCCGGTTTGAGGACGGATGTAACCCATGGCTGAAGCAGTCGTCGAAAACGCCCCCGCCAAAGCTGGCTCGCCAGCTTTGGCGGGGGCGTTTTCGACGACTGCTTCAGCCATGGGTT                                 <  2:719011/141‑1                                                                                                                                                                                                     AGTCGTAGAAAACGCCCCCGCCAAAGCTGGCTCGCCAGCTTTGGCGGGGGCGTTTTCGACGAATGCTTCAGCCATGGGGTACATCCGTCCTCAAACCCGCATCTGCGTGgt  >  2:541112/1‑109                                                                                                                                                                                                                                                                                                                     AGCAAGCCTCGACCCAACTGGCCAACGCGTTCGAAATCGGCAAGAGCGGCGTCGACCTGACTGACGTGATGATCGCTTCGCAAAAGGCCAGCGTGTCGATGCAAGCCATGACCCAGGTACGCAACAAGCTGGTCCAGGCGTACCAGGACATCATGCAGATGCCGGTTTGAGGACGGATGTAACCCATGGCTGAAGCAGTCGTCGAAAACGCCCCCGCCAAAGCTGGCTCGCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4960655‑4960421 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccagcTTTGGCGGGGGCGTTTTCGACGACTGCTTCAGCCATGGGTTACATCCGTCCTCAAACCGGCATCTGCATGAT  >  AE015451/4960435‑4960506

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.