| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | 5926174 = | 71 (1.030) | 3 (0.050) | 3/324 | NT | 4.5% | intergenic (‑30/+98) | gcvT‑II/PP_5195 | aminomethyltransferase/putative Iron ABC transporter, permease protein |
| ? | AE015451 | 5926228 = | 59 (0.900) | intergenic (‑84/+44) | gcvT‑II/PP_5195 | aminomethyltransferase/putative Iron ABC transporter, permease protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CTGCTGCCGGTCATCGGCCTGATTCGCCGTTCGGCCCGTCGACCCGGTCACAGTCACTGAGGATGTCAGTTTGCGACCTTGCGGCTACAATGCGCGGCATTCGCGCGGCGGGTGTGAGTAACAAGAAAAGCTGACGACCCAACGTCATCGACCGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/5926331‑5926174‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccgcGCGAATGCCGCGCATTGTAGCCGCAAGGTCGCAAACTGACATCCTCAGTGACTGTGACCGGGTCGACGGGCCGAACGGCGAATCAGGCCGATGACCGGCAGCAGGCCCACCAATACCAAGGTCAGTGCCGGCAGCGAGGCGCGCGCCCACTCGCCCTCGCTGGTCATCTCGAACACCCGCACGGCGAGGGTATCCCAGCCGAACGGCCGCATCAGCAACGTGGCGGGC > AE015451/5926228‑5926455 CTGCTGCCGGTCATCGGCCTGATTCGCCGTTCGGCCCGTCGACCCGGTCACAGTCACTGAGGATGTCAGTTTGCGACCTTGCGGCTACAATGCGCGGCATTCGCGCGGCGGGTGTGAGTAACAAGAAAAGCTGACGACCCAACGTCATCGACCGCCGCGCGAATGCCGCGCATTGTAGCCGCAAGGTCGCAAACTGACA > 2:784372/1‑199 GGTCATCGGCCTGATTCGCCGTTCGGCCCGTCGACCCGGTCACAGTCACTGAGGATGTCAGTTTGCGACCTTGCGGCTACAATGCGCGGCATTCGCGCGGCGGGTGTGAGTAACAAGAAAAGCTGACGACCCAACGTCATCGACCGCCGCGCGAATGCCGCGCATTGTAGCCGCAAGGTCGCAAACTGACATCCTCAGT < 1:784375/199‑1 ATGTCAGTTTGCGACCTTGCGGCTACAATGCGCGGCATTCGCGCGGCGGGTGTGAGTAACAAGAAAAGCTGACGACCCAACGTCATCGACCGCCGCGCGAATGCCGCGCATTGTAGCCGCAAGGTCGCAAACTGACATCCTCAGTGACTGTGAC < 1:65085/154‑1 CCGCCGCGCGAATGCCGCGCATTGTAGCCGCAAGGTCGCAAACTGACATCCTCAGTGACTGTGACCGGGTCGACGGGCCGAACGGCGAATCAGGCCGATGACCGGCAGCAGGCCCACCAATACCAAGGTCAGTGCCGGCAGCGAGGCGCGCGCCCACTCGCCCTCGCTGGTCATCTCGAACACCCGCACGGCGAGGGTATCCCAGCCGAACGGCCGCATCAGCAACGTGGCGG < 2:1270296/233‑1 CGCGAATGCCGCGCATTGTAGCCGCAAGGTCGCAAACTGACATCCTCAGTGACTGTGACCGGGTCGACGGGCCGAACGGCGAATCAGGCCGATGACCGGCAGCAGGCCCACCAATACCAAGGTCAGTGCCGGCAGCGAGGCGCGCGCCCACTCGCCCTCGCTGGTCATCTCGAACACCCGCACGGCGAGGGTATCCCAGCCGAACGGCCGCATCAGCAACGTGGCGGGC > 1:327980/1‑229 CGCGAATGCCGCGCATTGTAGCCGCAAGGTCGCAAACTG > 1:715616/1‑39 CGCGAATGCCGCGCATTGTAGCCGCAAGGTCGCAAACTG < 2:715613/39‑1 CTGCTGCCGGTCATCGGCCTGATTCGCCGTTCGGCCCGTCGACCCGGTCACAGTCACTGAGGATGTCAGTTTGCGACCTTGCGGCTACAATGCGCGGCATTCGCGCGGCGGGTGTGAGTAACAAGAAAAGCTGACGACCCAACGTCATCGACCGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/5926331‑5926174‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccgcGCGAATGCCGCGCATTGTAGCCGCAAGGTCGCAAACTGACATCCTCAGTGACTGTGACCGGGTCGACGGGCCGAACGGCGAATCAGGCCGATGACCGGCAGCAGGCCCACCAATACCAAGGTCAGTGCCGGCAGCGAGGCGCGCGCCCACTCGCCCTCGCTGGTCATCTCGAACACCCGCACGGCGAGGGTATCCCAGCCGAACGGCCGCATCAGCAACGTGGCGGGC > AE015451/5926228‑5926455 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |