New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	5252000 =	53 (0.770)	3 (0.050)	3/320	NT	5.7%	coding (843/882 nt)	cidR	transcriptional regulator, LysR family
	?	AE015451	5252049 =	49 (0.750)					intergenic (+10/+12)	cidR/PP_4628	transcriptional regulator, LysR family/conserved protein of unknown function

GCTGAAGGCGTGCCAGCAGCAGGGCTTCACCCCCAAGGAAGGCGGGCGCAGCGGCCAGGCGGATTTTTTGGCGGCGCTGGTGGCGGCGGGCCAGGGCGTGGTGATGCTGCCCCGGGTGGTGGCAAAAGTGCTGGAGCGCCCCGGGGTGGTGCGTGTGCCGTTGCATGCGCAGGAGGATTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCGCAGCATTGGCTGCACTTCGCGTACGCCCAGTTCGGCGAACAGCTCACGCATCTGCTCGCCACCCCCGCAATAGGTATCGCCGTAGCT  >  AE015451/5251766‑5252231                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                        cctgcggcctggcgcggcctgcctggcgcggtgatcgccttgggcgactccagctacggcgatacctattgcgggggtggcgagcagatgcgtgagctgttcgccgaactgggcgtacgcgaagtgcagccaatgctgcgcctggatgcgagcgagacggtgaccccggaggcggatgccgagccttggctggctgagttggcgagcgcactgaacgcctgacccggcacctgtGc                                                                                                                                                                                                                                        >  1:1018159‑M1/235‑236 (MQ=255)  ctgcggcctggcgcggcctgcctggcgcggtgatcgccttgggcgactccagctacggcgatacctattgcgggggtggcgagcagatgcgtgagctgttcgccgaactgggcgtacgcgaagtgcagccaatgctgcgcctggatgcgagcgagacggtgaccccggaggcggatgccgagccttggctggctgagttggcgagcgcactgaacgcctgacccgacacctggGCa                                                                                                                                                                                                                                       <  1:319547‑M1/3‑1 (MQ=255)         ctggcgcggcctgcctggcgcggtgatcgccttgggcgactccagctacggcgatacctattgcgggggtggcgagcagatgcgtgagctgttcgccgaactgggcgtacgcgaagtgcagccaatgctgcgcctggatgcgagcgagacggtgaccccggaggcggatgccgagccttggctggctgagttggcgagcgcactgaacgcctgacccggcacctgtGCAGGCg                                                                                                                                                                                                                                   >  2:1098020‑M1/227‑233 (MQ=255)                  agcagGGCTTCACCCCCAAGGAAGGCGGGCGCAGCGGCCAGGCGGATTTTTTGGCGGCGCTGGTGGCGGCGGGCCAGGGCGTGGTGATGCTGCCCCGGGTGGTGGCAAAAGTGCTGGAGCGCCCCGGGGTGGTGCGTGTGCCGTTGCATGCGCAGGAGGATTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCt                                                                                                                                                                                                                         <  2:1071505/234‑1 (MQ=255)                          ttCACCCCCAAGGAAGGCGGGCGCAGCGGCCAGGCGGATTTTTTGGCGGCGCTGGTGGCGGCGGGCCAGGGCGTGGTGATGCTGCCCCGGGTGGTGGCAAAAGTGCTGGAGCGCCCCGGGGTGGTGCGTGTGCCGTTGCATGCGCAGGAGGATTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGa                                                                                                                                                                                                               >  1:1162959/1‑236 (MQ=255)                                cccAAGGAAGGCGGGCGCAGCGGCCAGGCGGATTTTTTGGCGGCGCTGGTGGCGGCGGGCCAGGGCGTGGTGAGGCTGCCCCGGGTGGTGGCAAAAGTGCTGGAGCGCCCCGGGGTGGTGCGTGTGCCGTTGCATGCGCAGGAGGATTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTgcg                                                                                                                                                                                                                  <  1:853206/227‑1 (MQ=255)                                   agggaaggCGGGCGCAGCGGCCAGGCGGATTTTTTGGCGGCGCTGGTGGCGGCGGGCCAGGGCGTGGTGATGCTGCCCCGGGTGGTGGCAAAAGTGCTGGAGCGCCCCGGGGTGGTGCGTGTGCCGTTGCATGCGCAGGAGGATTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGcc                                                                                                                                                                                                            <  2:967014/228‑1 (MQ=255)                                            gggcgCAGCGGCCAGGCGGATTTTTTGGCGGCGCTGGTGGCGGCGGGCCAGGGCGTGGTGATGCTGCCCCGGGTGGTGGCAAAAGTGCTGGAGCGCCCCGGGGTGGTGCGTGTGCCGTTGCATGCGCAGGAGGATTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGcc                                                                                                                                                                                                                          >  1:1004676/1‑207 (MQ=255)                                            gggcgCAGCGGCCAGGCGGATTTTTTGGCGGCGCTGGTGGCGGCGGGCCAGGGCGTGGTGATGCTGCCCCGGGTGGTGGCAAAAGTGCTGGAGCGCCCCGGGGTGGTGCGTGTGCCGTTGCATGCGCAGGAGGATTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGcc                                                                                                                                                                                                                          <  2:1004673/207‑1 (MQ=255)                                            gggcgCAGCGGCCAGGCGGATTTTTTGGCGGCGCTGGTGGCGGCGGGCCAGGGCGTGGTGATGCTGCCCCGGGTGGTGGCAAAAGTGCTGGAGCGCCCCGGGGTGGTGCGTGTGCCGTTGCATGCGCAGGAGGATTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCt                                                                                                                                                                                                    >  1:503487/1‑229 (MQ=255)                                              gcgcAGCGGCCAGGCGGATTTTTTGGCGGCGCTGGTGGCGGCGGGCCAGGGCGTGGTGATGCTGCCCCGGGTGGTGGCAAAAGTGCTGGAGCGCCCTGGGGTGGTGCGTGTGCCGTTGCATGCGCAGGAGGATTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCt                                                                                                                                                                                           <  1:1214165/236‑1 (MQ=255)                                                  aGCGGCCAGGCGGATTTTTTGGCGGCGCTGGTGGCGGCGGGCCAGGGCGTGGTGATGCTGCCCCGGGTGGTGGCAAAAGTGCTGGAGCGCCCCGGGGTGGTGCGTGTGCCGTTGCATGCGCAGGAGGATTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGca                                                                                                                                                                                        >  1:1217771/1‑235 (MQ=255)                                                              gATTTTTTGGCGGCGCTGGTGGCGGCGGGCCAGGGCGTGGTGATGCTGCCCCGGGTGGTGGCAAAAGTGCTGGAGCGCCCCGGGGTGGTGCGTGTGCCGTTGCATGCGCAGGAGGATTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGt                                                                                                                                                                            >  1:464135/1‑235 (MQ=255)                                                                    ttGGCGGCGCTGGTGGCGGCGGGCCAGGGCGTGGTGATGCTGCCCCGGGTGGTGTCAACCGTGCTGGAGCGCCCCGGGGTGGTGCGTGTGCCGTTGCATGCGCAGGAGGATTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGc                                                                                                                                                                                                     <  1:651725/204‑1 (MQ=255)                                                                            gcTGGTGGCGGCGGGCCAGGGCGTGGTGATGCTGCCCCGGGTGGTGGCAAAAGTGCTGGAGCGCCCCTGGGTGGTGCGTGTGCCGTTGCATGCGCAGGAGGATTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCACGCGTGGTTGGCCTTGTTGCGCGAGcccc                                                                                                                                                                                                          <  1:600591/191‑1 (MQ=255)                                                                                                      acgcaccaccccGGGTGGTGGCAAAAGTGCTGGAGCGCCCCGGGGTGGTGCGTGTGCCGTTGCATGCGCAGGAGGATTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCagccagcc                                                                                                                                          >  1:673172/9‑229 (MQ=255)                                                                                                       gccgaactgggcgtacgcgaagtgcagccaatgctgcgcctggatgcgagcgagacggtgaccccggaggcggatgccgagccttggctggctgagttggcgagcgcactgaacgcctgacccggcacctgtGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTg                                                                                                                                                                                          >  1:1205078‑M1/133‑180 (MQ=255)                                                                                                       gccgaactgggcgtacgcgaagtgcagccaatgctgcgcctggatgcgagcgagacggtgaccccggaggcggatgccgagccttggctggctgagttggcgagcgcactgaacgcctgacccggcacctgtGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTg                                                                                                                                                                                          <  2:1205075‑M1/48‑1 (MQ=255)                                                                                                       gATGCTGCCTCGGGTGGTGGAAAAAGTGCTGGAGCGCCCCGGGGTGGTGCGTGTGCCGTTGCATGCGCAGGAGGATTTGCGTTGGGAGATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTACGCGAGCCCCACgg                                                                                                                                                                                                      >  2:638896/1‑168 (MQ=255)                                                                                                        ccgaactgggcgtacgcgaagtgcagccaatgctgcgcctggatgcgagcgagacggtgaccccggaggcggatgccgagccttggctggctgagttggcgagcgcactgaacgcctgacccggcacctgtGCAGGCGTg                                                                                                                                                                                                                                 >  1:128214‑M1/132‑140 (MQ=255)                                                                                                            tgcCCCGGGTGGTGGCAAAAGTGCTGGAGCGCCCCGGGGTGGTGCGTGTGCCGTTGCATGCGCAGGAGGATTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCCCAGGTGCCGGGTc                                                                                                                                                                           >  2:60583/1‑190 (MQ=255)                                                                                                                 cGGGTGGTGGCAAAAGTGCTGGAGCGCCCCGGGGTGGTGCGTGTGCCGTTGCATGCGCAGGAGGATTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCt                                                                                                                        >  1:1235683/1‑236 (MQ=255)                                                                                                                     tggtggCAAAAGTGCTGGAGCGCCCCGGGGTGGTGCGTGTGCCGTTGCATGCGCAGGAGGATTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGc                                                                                                                          <  2:464132/230‑1 (MQ=255)                                                                                                                      ggtggCAAAAGTGCTGGAGCGCCCCGGGGTGGTGCGTGTGCCGTTGCATGCGCAGGAGGATTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGcc                                                                                                                                                       >  2:581189/1‑200 (MQ=255)                                                                                                                      ggtggCAAAAGTGCTGGAGCGCCCCGGGGTGGTGCGTGTGCCGTTGCATGCGCAGGAGGATTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCAt                                                                                                                              >  2:1149878/1‑225 (MQ=255)                                                                                                                           cAAAAGTGCTGGAGCGCCCCGGGGTGGTGCGTGTGCCGTTGCATGCGCAGGAGGATTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGc                                                                                                                                                                                                     <  2:1261270/149‑1 (MQ=255)                                                                                                                           cAAAAGTGCTGGAGCGCCCCGGGGTGGTGCGTGTGCCGTTGCATGCGCAGGAGGATTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGc                                                                                                                                                                                                     >  1:1261273/1‑149 (MQ=255)                                                                                                                            aaaaGTGCTGGAGCGCCCCGGGGTGGTGCGTGTGCCGTTGCATGCGCAGGAGGATTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGtt                                                                                                                                                                    >  2:1247935/1‑181 (MQ=255)                                                                                                                            aaaaGTGCTGGAGCGCCCCGGGGTGGTGCGTGTGCCGTTGCATGCGCAGGAGGATTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTGGGcc                                                                                                                                                                                                                          >  2:330835/1‑127 (MQ=255)                                                                                                                                      gAGCGCCCCGGGGTGGTGCGTGTGCCGTTGCATGCGCAGGAGGATTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCATCCAGCCAAGGCTCGGCATCCGCCTCCGGGAGCACCGTctcgctcg                                                                                                   >  1:1205096/1‑236 (MQ=255)                                                                                                                                              cGGGGTGGTGCGTGTGCCGTTGCATGCGCAGGAGGATTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGcgcg                                                                                                                                                                                                                >  1:171657/1‑119 (MQ=255)                                                                                                                                                       gCGTGTGCCGTTGCATGCGCAGGAGGATTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCgcagca                                                                                    >  2:858494/1‑234 (MQ=255)                                                                                                                                                         gtgtGCCGTTGCATGCGCAGGAGGATTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCGCAGCATTgg                                                                                >  1:650160/1‑236 (MQ=255)                                                                                                                                                         gtgtGCCGTGGCATGCGCAGGAGGATTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCgcag                                                                                      <  1:1142909/230‑1 (MQ=255)                                                                                                                                                             gCCGTTGCATGCGCAGGAGGATTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGc                                                                                                                                                                       >  2:12091/1‑145 (MQ=255)                                                                                                                                                               cGTTGCATGCGCAGGAGGATTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCGCAGCATTGGCTGCa                                                                           >  1:708825/1‑235 (MQ=255)                                                                                                                                                                gTTGCATGCGCAGGAGGATTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCGCAGCATTGGCTGCACt                                                                         >  1:856770/1‑236 (MQ=255)                                                                                                                                                                    ccccggaggcggatgccgagccttggctggctgagttggcgagcgcactgaacgcctgacccggcacctgtGCAGGCg                                                                                                                                                                                                                                   <  2:528964‑M1/7‑1 (MQ=255)                                                                                                                                                                         gcAGGAGGATTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCGCAGCATTGGCTGCACTTCGCGTAc                                                                 <  1:1100678/235‑1 (MQ=255)                                                                                                                                                                            ggaggaTTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCGCAGCATTGGCTGCACTTCGCGTACg                                                                >  2:525294/1‑233 (MQ=255)                                                                                                                                                                                gaTTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCGCAGCATTGGCTGCACTTCGCGTACGCCCAGt                                                          >  1:1200070/1‑235 (MQ=255)                                                                                                                                                                                atgccgagccttggctggctgagttggcgagcgcactgaacgcctgacccggcacctgtGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCCGCCAAGGCTCGGCATCCGCCTCCg                                                                                                                     <  2:792032‑M1/117‑1 (MQ=255)                                                                                                                                                                                 aTTTGCGTTGGGATAGCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCa                                                                                                                               >  2:1040348/1‑165 (MQ=255)                                                                                                                                                                                    tGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAg                                                                                                                                       >  2:890131/1‑154 (MQ=255)                                                                                                                                                                                     gCGTTGGCATATCGCGTTTATCTGGCGGCGTGCCGCCTACCTGTCACGACCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCGCAGCATTGGCTGCACTTCGCGTACGCCCAGTTCGGc                                                     <  1:762769/235‑1 (MQ=255)                                                                                                                                                                                      cGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCCCAGGTGCCGGGTCAGGCGTTCAGTCCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCacc                                                                                                                             >  2:513716/1‑160 (MQ=255)                                                                                                                                                                                             atatCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGGTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGGGCCGGGTCAGGCGTTCAGCGCGCTCGCCaa                                                                                                                                                     >  2:344822/1‑131 (MQ=255)                                                                                                                                                                                              tatCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACCCGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCCACTCAgccagcca                                                                                                                                         >  2:72186/1‑142 (MQ=255)                                                                                                                                                                                              tatCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCGCAGCATTGGCTGCACTTCGCGTACGCCCAGTTCGGCGAACAGCCCa                                           >  1:133715/1‑236 (MQ=255)                                                                                                                                                                                                      ttATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCggg                                                                                                                   <  1:29840/156‑1 (MQ=255)                                                                                                                                                                                                        gtCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGGGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGc                                                                                                                          <  2:467256/146‑1 (MQ=255)                                                                                                                                                                                                        aTCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCGCAGCATTGGCTGCACTTCGCGTACGCCCAGTTCGGCGAACAGCTCACGCATCTGCt                                 <  1:525297/236‑1 (MQ=255)                                                                                                                                                                                                           tGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCGCAGCATTGGCTGCa                                                                           <  1:537536/191‑1 (MQ=255)                                                                                                                                                                                                                gcgTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCGCAGCATTGGCTGCACTTCGCGTACGCCCAGTTCGGCGAACAGCTCACGCATCTGCTCGCCAccc                         >  1:768364/1‑236 (MQ=255)                                                                                                                                                                                                                   tGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCgcag                                                                                      >  1:1234602/1‑172 (MQ=255)                                                                                                                                                                                                                   tGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCgcag                                                                                      <  2:1234599/172‑1 (MQ=255)                                                                                                                                                                                                                               ggcACGAGAGCCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACCCGCCTGCCCAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTccgccggc                                                                                                                                           >  2:1128060/3‑107 (MQ=255)                                                                                                                                                                                                                                   cGAGCGGCGTAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGgcgc                                                                                        <  2:579535/154‑1 (MQ=255)                                                                                                                                                                                                                                    gAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGcccc                                                                                                                                                                                                          <  2:265422/39‑1 (MQ=255)                                                                                                                                                                                                                                     aGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAg                                                                                                                                                                                                              <  2:215521/34‑1 (MQ=255)                                                                                                                                                                                                                                     aGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCGCAGCATTGGCTGCACTTCGCGTACGCCCAGTTCGGCGAACAGCTCACGCATCTGCTCGCCACCCCCGCAATAGGTATCGCCGTAg    >  1:944915/1‑236 (MQ=255)                                                                                                                                                                                                                                       cggcgCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCGCAGCATTGGCTGCACTTCGCGTACGCCCAGTTCGGCGAACAGCTCACGCATCTGCTCGCCACCCCCGCAATAGGTATCGCCGTAGCt  <  1:858497/236‑1 (MQ=255)                                                                                                                                                                                                                                        ggcgCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCa                                                                                             >  1:693863/1‑144 (MQ=255)                                                                                                                                                                                                                                        ggcgCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCa                                                                                             <  2:693860/144‑1 (MQ=255)                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                        GCTGAAGGCGTGCCAGCAGCAGGGCTTCACCCCCAAGGAAGGCGGGCGCAGCGGCCAGGCGGATTTTTTGGCGGCGCTGGTGGCGGCGGGCCAGGGCGTGGTGATGCTGCCCCGGGTGGTGGCAAAAGTGCTGGAGCGCCCCGGGGTGGTGCGTGTGCCGTTGCATGCGCAGGAGGATTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCGCAGCATTGGCTGCACTTCGCGTACGCCCAGTTCGGCGAACAGCTCACGCATCTGCTCGCCACCCCCGCAATAGGTATCGCCGTAGCT  >  AE015451/5251766‑5252231

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.