New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	5252000 =	53 (0.770)	3 (0.050)	3/320	NT	5.7%	coding (843/882 nt)	cidR	transcriptional regulator, LysR family
	?	AE015451	5252049 =	49 (0.750)					intergenic (+10/+12)	cidR/PP_4628	transcriptional regulator, LysR family/conserved protein of unknown function

AGCGGCCAGGCGGATTTTTTGGCGGCGCTGGTGGCGGCGGGCCAGGGCGTGGTGATGCTGCCCCGGGTGGTGGCAAAAGTGCTGGAGCGCCCCGGGGTGGTGCGTGTGCCGTTGCATGCGCAGGAGGATTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCGCAGCATTGGCTGCACTTCGCGTACGCCCAGTTCGGCGAACAGCTCACGCATCTGCTCGCCACCCCCGCAATAGGTATCGCCGTAGCTGGAGTCGCCCAAGGCGATCACCGCGCCAGGCAGGCCGCGCCAGGCCGCAGG  >  AE015451/5251815‑5252282                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                          aGCGGCCAGGCGGATTTTTTGGCGGCGCTGGTGGCGGCGGGCCAGGGCGTGGTGATGCTGCCCCGGGTGGTGGCAAAAGTGCTGGAGCGCCCCGGGGTGGTGCGTGTGCCGTTGCATGCGCAGGAGGATTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGca                                                                                                                                                                                                                                           >  1:1217771/1‑235 (MQ=255)             gATTTTTTGGCGGCGCTGGTGGCGGCGGGCCAGGGCGTGGTGATGCTGCCCCGGGTGGTGGCAAAAGTGCTGGAGCGCCCCGGGGTGGTGCGTGTGCCGTTGCATGCGCAGGAGGATTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGt                                                                                                                                                                                                                               >  1:464135/1‑235 (MQ=255)                                                     acgcaccaccccGGGTGGTGGCAAAAGTGCTGGAGCGCCCCGGGGTGGTGCGTGTGCCGTTGCATGCGCAGGAGGATTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCagccagcc                                                                                                                                                                                             >  1:673172/9‑229 (MQ=255)                                                           tgcCCCGGGTGGTGGCAAAAGTGCTGGAGCGCCCCGGGGTGGTGCGTGTGCCGTTGCATGCGCAGGAGGATTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCCCAGGTGCCGGGTc                                                                                                                                                                                                                              >  2:60583/1‑190 (MQ=255)                                                                cGGGTGGTGGCAAAAGTGCTGGAGCGCCCCGGGGTGGTGCGTGTGCCGTTGCATGCGCAGGAGGATTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCt                                                                                                                                                                           >  1:1235683/1‑236 (MQ=255)                                                                    tggtggCAAAAGTGCTGGAGCGCCCCGGGGTGGTGCGTGTGCCGTTGCATGCGCAGGAGGATTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGc                                                                                                                                                                             <  2:464132/230‑1 (MQ=255)                                                                     ggtggCAAAAGTGCTGGAGCGCCCCGGGGTGGTGCGTGTGCCGTTGCATGCGCAGGAGGATTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGcc                                                                                                                                                                                                          >  2:581189/1‑200 (MQ=255)                                                                     ggtggCAAAAGTGCTGGAGCGCCCCGGGGTGGTGCGTGTGCCGTTGCATGCGCAGGAGGATTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCAt                                                                                                                                                                                 >  2:1149878/1‑225 (MQ=255)                                                                           aaaaGTGCTGGAGCGCCCCGGGGTGGTGCGTGTGCCGTTGCATGCGCAGGAGGATTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGtt                                                                                                                                                                                                                       >  2:1247935/1‑181 (MQ=255)                                                                                     gAGCGCCCCGGGGTGGTGCGTGTGCCGTTGCATGCGCAGGAGGATTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCATCCAGCCAAGGCTCGGCATCCGCCTCCGGGAGCACCGTctcgctcg                                                                                                                                                      >  1:1205096/1‑236 (MQ=255)                                                                                                      gCGTGTGCCGTTGCATGCGCAGGAGGATTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCgcagca                                                                                                                                       >  2:858494/1‑234 (MQ=255)                                                                                                        gtgtGCCGTTGCATGCGCAGGAGGATTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCGCAGCATTgg                                                                                                                                   >  1:650160/1‑236 (MQ=255)                                                                                                        gtgtGCCGTGGCATGCGCAGGAGGATTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCgcag                                                                                                                                         <  1:1142909/230‑1 (MQ=255)                                                                                                            gCCGTTGCATGCGCAGGAGGATTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGc                                                                                                                                                                                                                          >  2:12091/1‑145 (MQ=255)                                                                                                              cGTTGCATGCGCAGGAGGATTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCGCAGCATTGGCTGCa                                                                                                                              >  1:708825/1‑235 (MQ=255)                                                                                                               gTTGCATGCGCAGGAGGATTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCGCAGCATTGGCTGCACt                                                                                                                            >  1:856770/1‑236 (MQ=255)                                                                                                                      cggaggcggatgccgagccttggcgggctgagttggcgagcgcactgaacgcctgacccggcacctgtgcaggcgtgttagccgtggggctcgcgcaacaaggccaaccacgcctgcACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCAt                                                                                                                                                                                 <  2:792032‑M2/59‑1 (MQ=255)                                                                                                                        gcAGGAGGATTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCGCAGCATTGGCTGCACTTCGCGTAc                                                                                                                    <  1:1100678/235‑1 (MQ=255)                                                                                                                           ggaggaTTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCGCAGCATTGGCTGCACTTCGCGTACg                                                                                                                   >  2:525294/1‑233 (MQ=255)                                                                                                                               gaTTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCGCAGCATTGGCTGCACTTCGCGTACGCCCAGt                                                                                                             >  1:1200070/1‑235 (MQ=255)                                                                                                                               atgccgagccttggctggctgagttggcgagcgcactgaacgcctgacccggcacctgtGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCCGCCAAGGCTCGGCATCCGCCTCCg                                                                                                                                                                        <  2:792032‑M1/117‑1 (MQ=255)                                                                                                                                aTTTGCGTTGGGATAGCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCa                                                                                                                                                                                  >  2:1040348/1‑165 (MQ=255)                                                                                                                                   tGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAg                                                                                                                                                                                          >  2:890131/1‑154 (MQ=255)                                                                                                                                    gCGTTGGCATATCGCGTTTATCTGGCGGCGTGCCGCCTACCTGTCACGACCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCGCAGCATTGGCTGCACTTCGCGTACGCCCAGTTCGGc                                                                                                        <  1:762769/235‑1 (MQ=255)                                                                                                                                     cGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCCCAGGTGCCGGGTCAGGCGTTCAGTCCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCacc                                                                                                                                                                                >  2:513716/1‑160 (MQ=255)                                                                                                                                            atatCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGGTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGGGCCGGGTCAGGCGTTCAGCGCGCTCGCCaa                                                                                                                                                                                                        >  2:344822/1‑131 (MQ=255)                                                                                                                                             tatCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACCCGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCCACTCAgccagcca                                                                                                                                                                                            >  2:72186/1‑142 (MQ=255)                                                                                                                                             tatCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCGCAGCATTGGCTGCACTTCGCGTACGCCCAGTTCGGCGAACAGCCCa                                                                                              >  1:133715/1‑236 (MQ=255)                                                                                                                                                     ttATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCggg                                                                                                                                                                      <  1:29840/156‑1 (MQ=255)                                                                                                                                                       gtCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGGGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGc                                                                                                                                                                             <  2:467256/146‑1 (MQ=255)                                                                                                                                                       aTCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCGCAGCATTGGCTGCACTTCGCGTACGCCCAGTTCGGCGAACAGCTCACGCATCTGCt                                                                                    <  1:525297/236‑1 (MQ=255)                                                                                                                                                          tGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCGCAGCATTGGCTGCa                                                                                                                              <  1:537536/191‑1 (MQ=255)                                                                                                                                                               gcgTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCGCAGCATTGGCTGCACTTCGCGTACGCCCAGTTCGGCGAACAGCTCACGCATCTGCTCGCCAccc                                                                            >  1:768364/1‑236 (MQ=255)                                                                                                                                                                  tGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCgcag                                                                                                                                         >  1:1234602/1‑172 (MQ=255)                                                                                                                                                                  tGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCgcag                                                                                                                                         <  2:1234599/172‑1 (MQ=255)                                                                                                                                                                              ggcACGAGAGCCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACCCGCCTGCCCAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTccgccggc                                                                                                                                                                                              >  2:1128060/3‑107 (MQ=255)                                                                                                                                                                                  cGAGCGGCGTAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGgcgc                                                                                                                                           <  2:579535/154‑1 (MQ=255)                                                                                                                                                                                    aGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCGCAGCATTGGCTGCACTTCGCGTACGCCCAGTTCGGCGAACAGCTCACGCATCTGCTCGCCACCCCCGCAATAGGTATCGCCGTAg                                                       >  1:944915/1‑236 (MQ=255)                                                                                                                                                                                      cggcgCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCGCAGCATTGGCTGCACTTCGCGTACGCCCAGTTCGGCGAACAGCTCACGCATCTGCTCGCCACCCCCGCAATAGGTATCGCCGTAGCt                                                     <  1:858497/236‑1 (MQ=255)                                                                                                                                                                                       ggcgCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCa                                                                                                                                                <  2:693860/144‑1 (MQ=255)                                                                                                                                                                                       ggcgCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCa                                                                                                                                                >  1:693863/1‑144 (MQ=255)                                                                                                                                                                                           caggcgtgttagccgtggggctcgcgcaacaaggccaaccacgcctgcACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCGCAGCATTGGCTGCACTTCGCGTACGCCCAGTTCGGc                                                                                                        <  2:1205075‑M2/132‑1 (MQ=255)                                                                                                                                                                                           caggcgtgttagccgtggggctcgcgcaacaaggccaaccacgcctgcACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCGCAGCATTGGCTGCACTTCGCGTACGCCCAGTTCGGc                                                                                                        >  1:1205078‑M2/49‑180 (MQ=255)                                                                                                                                                                                            AGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCgca                                                                                                                                          <  1:44891‑M1/145‑1 (MQ=255)                                                                                                                                                                                            AGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCCCGCATCCAGGCgca                                                                                                                                          <  2:198165‑M1/145‑1 (MQ=255)                                                                                                                                                                                              GCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCGCAGCATTGGCTGCACTTCGCGTACGCCCAGTTCGGCGAACAGCTCACGCATCTGCTCGCCACCCCCGCAATAGGTATCGCCGTAGCTGGAGTCg                                              >  1:638899‑M1/1‑235 (MQ=255)                                                                                                                                                                                                GTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCt                                                                                                                                                                                       <  2:399659‑M1/96‑1 (MQ=255)                                                                                                                                                                                                GTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCGCAGCATTGGCTGCACTTCGCGTACGCCCAGTTCGGCGAACAGCTCACGCATCTGCTCGCCACCCCCGCAATAGGTATCGCCGCAGCTGGAGTCGc                                             <  2:989162‑M1/234‑1 (MQ=255)                                                                                                                                                                                                           tgttgCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCGCAGCATTGGCTGCACTTCGCGTACGc                                                                                                                  >  1:1171618/1‑154 (MQ=255)                                                                                                                                                                                                           tgttgCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCGCAGCATTGGCTGCACTTCGCGTACGCCCAGTTCGGCGAACAGCTCACGCATCTGCTCGCCACCCCCGCAATAGGTATCGCCGTAGCTGGAGTCGCCCAAGGCGATCAc                                >  1:1158219/1‑236 (MQ=255)                                                                                                                                                                                                               gcgcGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCGCAGCATTGCCTGCACTTCGCGTACGCCCAGTTCGGCGAACAGCTCACGCATCTGCTCGCCACCCCCGc                                                                        >  1:225452/1‑192 (MQ=255)                                                                                                                                                                                                                cgcgAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGCCGCAGCATTGGCTGCACTTCGCGCACGcccc                                                                                                               >  2:223520/1‑151 (MQ=255)                                                                                                                                                                                                                 gcgAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCGCAGCATTGGCTGCACTTCGCGTACGCCCAGTTCGGCGAACAGCTCACGCATCTGCTCGCCACCCCCGCAATAGGTATCGCCGTAGCTGGAGTCGCCCAAGGCGATCACCgcgc                           <  1:989165/235‑1 (MQ=255)                                                                                                                                                                                                                     gCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCGCAGCATTGGCTGCa                                                                                                                              >  1:677536/1‑132 (MQ=255)                                                                                                                                                                                                                     gCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCGCAGCATTGGCTGCa                                                                                                                              <  2:677533/132‑1 (MQ=255)                                                                                                                                                                                                                     gCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCGCAGCATTGGCTGCACTTCGCGTACGCCCAGTTCGGCGAACAGCTCACGCATCTGCTCGCCACCCCCGc                                                                        <  1:200991/186‑1 (MQ=255)                                                                                                                                                                                                                         cACGGCTACCACGCCGGCCCAGGGGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCGCAGCATTGGCTGCACTTCGCGTACGCCCAGTTCGGCGAACAGCTCa                                                                                              <  2:111052/160‑1 (MQ=255)                                                                                                                                                                                                                         cACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGACTCCGGGGTCACCGTCTCGCTCGCATCCAGGCGCAGCATTGGCTGCACTTCGCGTACGCCCAGTTCGGCGAACAGCTCACGCATCTGCTCGCCACCCCCGCAATAGGTATCGCCGTAGCTGGAGACGCCCATGGCGATCACCGGCCcaggca                     >  2:683252/1‑233 (MQ=255)                                                                                                                                                                                                                            ggCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCGCAGCATTGGCTGCACTTCGCGTACGCCCAGTTCGGCGAACAGCTCACGCATCTGCTCGCCACCCCCGCAATAGGTATCGCCGTAGCTGGAGTCGCCCAAGGCGATCACCGCGCCAGGCAGGCcgc               <  1:1149881/236‑1 (MQ=255)                                                                                                                                                                                                                                  cacgcctgcACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCGCAGCATTGGCTGCACTTCGCGTACGCCCAGTTCgg                                                                                                         >  1:128214‑M2/10‑140 (MQ=255)                                                                                                                                                                                                                                    cgcctgcACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCgggg                                                                                                                                                                     <  2:528964‑M2/71‑1 (MQ=255)                                                                                                                                                                                                                                    cgcctgcACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCGCAGCATTGGCTGCACTTCGCGTACGCCCAGTTCGGCGAACAGCTCACGCATCTGCTCGCCACCCCCGCAATAGGTATCGCCGTAGCTGGAGTCGCCCAAGGCGATCACCGCGCCAGGCAGGCCGCGCCAg          >  2:1098020‑M2/8‑233 (MQ=255)                                                                                                                                                                                                                                        tgcCCAGGTGTCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCGCAGCATTGGCTGCACTTCGCGTACGCCCAGTTCGGCGAACAGCTCACGCATCTGCTCGCCACCCCCGCAATAGGTATCGCCGTAGCTGGAGTCGCCCAAGGCGATCACCGCGCCAGGCAGGCCGCGCCAGGCCGCAg   <  1:319547‑M2/233‑1 (MQ=255)                                                                                                                                                                                                                                         gcACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCGCAGCATTGGCTGCACTTCGCGTACGCCCAGTTCGGCGAACAGCTCACGCATCTGCTCGCCACCCCCGCAATAGGTATCGCCGTAGCTGGAGTCGCCCAAGGCGATCACCGCGCCAGGCAGGCCGCGCCAGGCCGCAgg  >  1:1018159‑M2/3‑236 (MQ=255)                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                          AGCGGCCAGGCGGATTTTTTGGCGGCGCTGGTGGCGGCGGGCCAGGGCGTGGTGATGCTGCCCCGGGTGGTGGCAAAAGTGCTGGAGCGCCCCGGGGTGGTGCGTGTGCCGTTGCATGCGCAGGAGGATTTGCGTTGGGATATCGCGTTTATCTGGCGGCGTGGCGCCTACCTGTCACGAGCGGCGCAGGCGTGGTTGGCCTTGTTGCGCGAGCCCCACGGCTAACACGCCTGCACAGGTGCCGGGTCAGGCGTTCAGTGCGCTCGCCAACTCAGCCAGCCAAGGCTCGGCATCCGCCTCCGGGGTCACCGTCTCGCTCGCATCCAGGCGCAGCATTGGCTGCACTTCGCGTACGCCCAGTTCGGCGAACAGCTCACGCATCTGCTCGCCACCCCCGCAATAGGTATCGCCGTAGCTGGAGTCGCCCAAGGCGATCACCGCGCCAGGCAGGCCGCGCCAGGCCGCAGG  >  AE015451/5251815‑5252282

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.