Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AE015451	2095118	2095374	257	23 [22]	[21] 23	[alaA]	[alaA]

ACCACCGCGAGGTTGGTGGCTACAAACAACAGAATGCGCATCATGGTTGTTACGTTCTCCTGACGGATGAGTTGTCGCTTACTGCGGGGTATATAAGGGGCCTGCCGCGCCGATTCAATCGGGGGACTATTTCAAACTGTGTACGGCGGAGTATGGCAGAGGATGGCGTGGGGGCTGTGGGATAGAGCGTTGCAGGATGTAAGAAACATTCGGCTTGGGGGCTGCGTCAAGGCCGCTGGGTGTTTGCCGCAAGTGGTGTGGTGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTGCGCCCCACCACCACCCC  >  AE015451/2094906‑2095224                                                                                                                                                                                                                    |                                                                                                            accaccGCGAGGTTGGTGGCTACAAACAACAGAATGCGCATCATGGTTGTTACGTTCTCCTGACGGATGAGTTGTCGCTTACTGCGGGGTATATAAGGGGCCTGCCGCGCCGATTCAATCGGGGGACTATTTCAAACTGTGTACGGCGGAGTATGGCAGAGGATGGCGTGGGGGCTGTGGGATAGAGCGTTGCAGGATGTAAGAAACATTCGGCTTGGGGGCTGCGTCAAGGCCg                                                                                      >  1:739615/1‑235 (MQ=255)         gAGGTTGGTGGCTACAAACAACAGAATGCGCATCATGGTTGTTACGTTCTCCTGACGGATGAGTTGTCGCTTACTGCGGGGTATATAAGGGGCCTGCCGCGCCGATTCAATCGGGGGACTATTTCAAACTGTGTACGGCGGAGTATGGCAGAGGATGGCGTGGGGGCTGTGGGATAGAGCGTTGCAGGATGTAAGAAACATTCg                                                                                                             >  2:993170/1‑204 (MQ=255)            gTTGGTGGCTACAAACAACAGAATGCGCATCATGGTTGTTACGTTCTCCTGACGGATGAGTTGTCGCTTACTGCGGGGTATATAAGGGGCCTGCCGCGCCGATTCAATCGGGGGACTATTTCAAACTGTGTACGGCGGAGTATGGCAGAGGATGGCGTGGGGGCTGTGGGATAGAGCGTTGCAGGATGTAAGAAACATTCGGCTTGGGGGCTGCGTCAAGGCCGCTGGGTGTTTGc                                                                          <  1:486843/236‑1 (MQ=255)                      agagacagcaGAATGCGCATCATGGTTGTTACGTTCTCCTGACGGATGAGTTGTCGCTTACTGCGGGGTATATAAGGGGCCTGCCGCGCCGATTCAATCGGGGGACTATTTCAAACTGTGTACGGCGGAGTATGGCAGAGGATGGCGTGGGGGCTGTGGGATAGAGCGTTGCAGGATGTAAGAAACATTCGGCTTGGGGGCTGCGTCAAGGCCGCTGGGTGTTTGCCGCAAgtggt                                                                <  1:836253/232‑1 (MQ=255)                                       cttcatGGTTGTTACGTTCTCCTGACGGATGAGTTGTCGCTTACTGCGGGGTATATAAGGGGCCTGCCGCGCCGATTCAATCGGGGGACTATTTCAAACTGTGTACGGCGGAGTATGGCAGAGGATGGCGTGGGGGCTGTGGGATAGAGCGTTGCAGGATGTAAGAAACATTCGGCTTggg                                                                                                      <  1:97957/179‑1 (MQ=255)                                                  ttACGTTCTCCTGACGGATGAGTTGTCGCTTACTGCGGGGTATATAAGGGGCCTGCCGCGCCGATTCAATCGGGGGACTATTTCAAACTGTGTACGGCGGAGTATGGCAGAGGATGGCGTGGGGGCTGTGGGATAGAGCGTTGCAGGATGTAAGAAACATTCGGCTTGGGGGCTGCGTCAAGGCCGCTGGGTGTTTGCCGCAAGTGGTGTGGTGCCTGTgag                                                  >  1:311789/1‑222 (MQ=255)                                                        tctcCTGACGGATGAGTTGTCGCTTACTGCGGGGTATATAAGGGGCCTGCCGCGCCGATTCAATCGGGGGACTATTTCAAACTGTGTACGGCGGAGTATGGCAGAGGATGGCGTGGGGGCTGTGGGATAGAGCGTTGCAGGATGTAAGAAACATTCGGCTTGGGGGCTGCGTCAAGGc                                                                                        <  1:487245/178‑1 (MQ=255)                                                         ctcCTGACGGATGAGTTGTCGCTTACTGCGGGGTATATAAGGGGCCTGCCGCGCCGATTCAATCGGGGGACTATTTCAAACTGTGTACGGCGGAGTATGGCAGAGGATGGCGTGGGGGCTGTGGGATAGAGCGTTGCAGGATGTAAGAAACATTCGGCTTGGGGGCTGCGTCAAGGCCGCTGGGTGTTTGCCGCAAGTGGTGTGGTGCCTGTGAGATCGAGCGCCGCGCGggcggc                             <  1:993173/236‑1 (MQ=255)                                                                 ggttggtttGTCGCTTACTGCGGGGTATATAAGGGGCCTGCCGCGCCGATTCAATCGGGGGACTATTTCAAACTGTGTACGGCGGAGTATGGCAGAGGATGGCGTGGGGGCTGTGGGATAGAGCGTTGCAGGATGTAAGAAACATTCGGCTTGGGGGCTGCGTCAAGGCCGCTGGGTGTTTGCCg                                                                        <  2:283724/178‑1 (MQ=255)                                                                       gTTGTCGCTTACTGCGGGGTATATACGGGGCCTGCCGCGCCGATTCAATCGGGGGACTATTTCAAACTGTGTACGGCGGAGTATGGCAGAGGATGGCGTGGGGGCTGTGGGATAGAGCGTTGCAGGATGTAAGAAACATTCGGCTTGGGGGCTGCGTCAAGGc                                                                                        <  2:1013487/163‑1 (MQ=255)                                                                                 aCTGCGGGGTATATAAGGGGCCTGCCGCGCCGATTCAATCGGGGGACTATTTCAAACTGTGTACGGCGGAGTATGGCAGAGGATGGCGTGGGGGCTGTGGGATAGAGCGTTGCAGGATGTAAGAAACATTCGGCTTGGGGGCTGCGTCAAGGCCGCTGGGTGTTTGCCGCAAGTGGTGTGGTGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTc                         <  2:739612/216‑1 (MQ=255)                                                                                     cGGGGTATATAAGGGGCCTGCCGCGCCGATTCAATCGGGGGACTATTTCAAACTGTGTACGGCGGAGTATGGCAGAGGATGGCGTGGGGGCTGTGGGATAGAGCGTTGCAGGATGTAAGAAACATTCGGCTTGGGGGCTGCGTCAAGGCCGCTGGGTGTTTGCCGCAAGTGGTGTGGTGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTGCGCCCCACCACCAcccc  >  1:305682/1‑235 (MQ=255)                                                                                                       tGCCGCGCCGATTCAATCGGGGGACTATTTCAAACTGTGTACGGCGGAGTATGGCAGAGGATGGCGTGGGGGCTGTGGGATAGAGCGTTGCAGGATGTAAGAAACATTCGGCTTGGGGGCTGCGTCAAGGCCGCTGGGTGTTTGCCGCAAGTGGTGTGGTGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTGCGCCCCACCACCAccc   >  1:1242807/1‑216 (MQ=255)                                                                                                                                   ttCAAACTGTGTACGGCGGAGTATGGCAGAGGATGGCGTGGGGGCTGTGGGATAGAGCGTTGCAGGATGTAAGAAACATTCGGCTTGGGGGCTGCGTCAAGGCCGCTGGGTGTTTGCCGCAAGTGGTGTGGTGCCTGTGAGATCGAGcgcc                                        <  2:311788/151‑1 (MQ=255)                                                                                                                                          ggtgtACGGCGGAGTATGGCAGAGGATGGCGTGGGGGCTGTGGGATAGAGCGTTGCAGGATGTAAGAAACATTCGGCTTGGGGGCTGCGTCAAGGCCGCTGGGTGTTTGCCGCAAgtggtgt                                                              <  2:90793/121‑1 (MQ=255)                                                                                                                                           gtggACGGCGGAGTATGGCAGAGGATGGCGTGGGGGCTGGGGGATAGAGCGTTGCAGGATGTAAGAAACATTCGGCTTGGGGGCTGCGTc                                                                                             <  2:47914/90‑1 (MQ=255)                                                                                                                                               aCGGCGGAGTATGGCAGAGGATGGCGTGGGGGCTGTGGGATAGAGCGTTGCAGGATGTAAGAAACATTCGGCTTGGGGGCTGCGTCAAGGCCGCTGGGTGTTTGCCGCAAGTGGTGTGGTGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTgcgc                <  2:1242804/163‑1 (MQ=255)                                                                                                                                                         atcgCAGAGGATGGCGTGGGGGCTGTGGGATAGAGCGTTGCAGGATGTAAGAAACATTCGGCTTGGGGGCTGCGTCAAGGCCg                                                                                      <  2:1271609/80‑1 (MQ=255)                                                                                                                                                         atcgCAGAGGATGGCGTGGGGGCTGTGGGATAGAGCGTTGCAGGATGTAAGAAACATTCGGCTTGGGGGCTGCGTCAAGGCCg                                                                                      >  1:1271612/4‑83 (MQ=255)                                                                                                                                                                aggaggGCGTGGGGGCTGTGGGATAGAGCGTTGCAGGATGTAAGAAACATTCGGCTTGGGGGCTGCGTCAAGGCCGCTGGGTGTTTGCCGCAAGTGGTGTGGTGCCTGTGAGATCGAGCGCCGCGCGggcggc                             <  2:1285746/133‑1 (MQ=255)                                                                                                                                                                          gggggCTGTGGGATAGAGCGTTGCAGGATGTAAGAAACATTCGGCTTg                                                                                                        <  1:1038629/48‑1 (MQ=255)                                                                                                                                                                          gggggCTGTGGGATAGAGCGTTGCAGGATGTAAGAAACATTCGGCTTg                                                                                                        >  2:1038626/1‑48 (MQ=255)                                                                                                                                                                                                    gATGTCAGAAACATTCGGCTTGGGGGCTGCGTCAAGGCCGCTGGGTGTGTGCCGCAAGTGGTGTGGTGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTgcgc                <  2:1165347/110‑1 (MQ=255)                                                                                                                                                                                                                    |                                                                                                            ACCACCGCGAGGTTGGTGGCTACAAACAACAGAATGCGCATCATGGTTGTTACGTTCTCCTGACGGATGAGTTGTCGCTTACTGCGGGGTATATAAGGGGCCTGCCGCGCCGATTCAATCGGGGGACTATTTCAAACTGTGTACGGCGGAGTATGGCAGAGGATGGCGTGGGGGCTGTGGGATAGAGCGTTGCAGGATGTAAGAAACATTCGGCTTGGGGGCTGCGTCAAGGCCGCTGGGTGTTTGCCGCAAGTGGTGTGGTGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTGCGCCCCACCACCACCCC  >  AE015451/2094906‑2095224

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑