New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	682075 =	36 (0.820)	3 (0.070)	3/314	NT	8.3%	coding (1198/1944 nt)	PP_0584	Methyl‑accepting chemotaxis transducer
	?	AE015451	682089 =	33 (0.820)					coding (1184/1944 nt)	PP_0584	Methyl‑accepting chemotaxis transducer

GATCAACAGCGTCACCAATGGCCTGGAAGACATTGCCCAAGGTGAGGGTGACCTGACCCGCAACCTGGAAATCCGCGGCCGCGACGAAACCGCGCAACTGGCCAACTGGTTCAACCAGTTCCTCGGTGCCATTCGCAGCCTGATCCAGCACATCGGCACTGCTGCCAGCAAGATCCTCAGCACGTCCAGCAGCTCGACCCGCGTCTCCAGTGACATGGCCGAGGCGGCCGGCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/682310‑682075 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggccggccgccTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCACCGAGGAACTGGTTGAACCAGTTGGCCAGTTGCGCGGTTTCGTCGCGGCCGC  >  AE015451/682089‑682236                                                                                                                                                                                                                                                                                                                                                                                                  GATCAACAGCGTCACCAATGGCCTGGAAGACATTGCCCAAGGTGAGGGTGACCTGACCCGCAACCTGGAAATCCGCGGCCGCGACGAAACCGCGCAACTGGCCAACTGGTTCAACCAGTTCCTCGGTGCCATTCGCAGCCTGATCCAGCACATCGGCACTGCTGCCAGCAAGATCCTCAGCACGTCCAGCAGCTCGACCCGCGTCTCCAGTGACATGGCCGCGGCGGCCGGCCGCC                                                                                                                                                      >  1:242132/1‑236                                                ggGACCTGACCCGCCACCTGGAAATCCGCGGCCGCGACGAAACCGCGCAACTGGCCAACTGGTTCAACCATTTCCTCGGTGCCATTCGCAGCCTGATCCAGCACATCGGCACTGCTGCCAGCAAGATCCTCAGCACGTCCAGCAGCTCGACCCGCGTCTCCAGTGACATGGCCGAGGCGGCCGGCCGCCTCGGC                                                                                                                                                 <  1:55852/192‑1                                                                                                                                  CATTCGCAGCCTGATCCAGCACATCGGCACTGCTGCCAGCAAGATCCTCAGCACGTCCAGCAGCTCGACCCGCGTCTCCAGTGACATGGCCGAGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGGGGCTCTTGCT                                                                                              >  1:506479/1‑163                                                                                                                                                                                        GTCCAGCAGCTCGACCCGCGTCTCCAGTGACATGGCCGAGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCGGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCACCGAGGAACTGGTTGAACCAGTTGGCCAGTTGCGCGGTTTCGTCG         >  2:559309/1‑194                                                                                                                                                                                                                   TGACATGGCTGGGGCGGCCGGCCGCCTGGGCCATGTCACTGGAGGCGCGGGTCGGGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAG                                                                   <  2:711565/109‑1                                                                                                                                                                                                                                  GGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCACCGAGGAACTGGTTGAACCAGTTGGCCAGTTGCGCGGTTTCGTCGCGGCCGC  >  1:307075/1‑159                                                                                                                                                                                                                                          GCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTG                                                                                    <  1:727165/69‑1                                                                                                                                                                                                                                                                                                                                                                                                  GATCAACAGCGTCACCAATGGCCTGGAAGACATTGCCCAAGGTGAGGGTGACCTGACCCGCAACCTGGAAATCCGCGGCCGCGACGAAACCGCGCAACTGGCCAACTGGTTCAACCAGTTCCTCGGTGCCATTCGCAGCCTGATCCAGCACATCGGCACTGCTGCCAGCAAGATCCTCAGCACGTCCAGCAGCTCGACCCGCGTCTCCAGTGACATGGCCGAGGCGGCCGGCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/682310‑682075 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggccggccgccTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCACCGAGGAACTGGTTGAACCAGTTGGCCAGTTGCGCGGTTTCGTCGCGGCCGC  >  AE015451/682089‑682236

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.