New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	811732 =	43 (0.980)	3 (0.070)	3/322	NT	6.5%	coding (520/918 nt)	PP_0698	Transcriptional regulator, LysR family
	?	AE015451	811872 =	46 (1.120)					coding (380/918 nt)	PP_0698	Transcriptional regulator, LysR family

CTGATCCCGCGCCTGCCGCGCTTCCATGCCACCCACCCCGACCTTCAGTTGCACCTGGTAGCCGCAGGCGGCCCGCTGGACTTCGCGCGCAGCGGTGTCGACCTGGCAATTCGCCGCGACGACTTCCACTGGGACAACCAGCTGTACAGCCAGAAAATCTGCGATGAATGGATCGGCCCGGTGTGCCACCCCGCCGCCTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/811933‑811732 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgcctgcgGCTACCAGGTGCAACTGAAGGTCGGGGTGGGTGGCATGGAAGCGCGGCAGGCGCGGGATCAGCCAGCGCATGGC  >  AE015451/811872‑811945                                                                                                                                                                                                                                                                                      CTGATCCCGCGCCTGCCGCGCTTCCATGCCACCCACCCCGACCTTCAGTTGCACCTGGTAGCCGCAGGCGGCCCGCTGGACTTCGCGCGCAGCGGTGTCGACCTGGCAATTCGCCGCGACGACTTCCACTGGGACAACCAGCTGTACAGCCAGAAAATCTGCGATGAATGGATCGGCCCGGTGTGCCACCCCGCC                                                                                   <  2:337037/195‑1     cCCCCCGCCTGCCGCGCTTCCATGCCACCCACCCCGCCCTTCAGTTGCACCTGGTGGCCGCAGGCGGCCCGCTGGCCTTCGCGCGCAGCGGTGTCGACCTGGCAATTCGCCGCGACGACTTCCACTGGGACAACCAGCTGTACAGCCAGAAAATCTGCGATGAATGGATCGGCCCGGTGTGCCACCCCGCCGCCTG                                                                              <  2:193093/195‑1                  GCGCTTCCATGCCACCCCCCCCGACCTTCAGTTGCACCTGGTAGCCGCAGGCGGCCCGCTGGACTTCGCGCGCAGCGGTGTCGACCTGGCAATTCGCCGCGACGACTTCCACTGGGACACCCAGCTGTACAGCCAGAAAATCTGCGATGAATGGATCGGCCCGGTGTGCCACCCCGCC                                                                                   <  2:634815/178‑1                                                 TTGCACCTGGTAGCCGCAGGCGGCCCGCTGGACTTCGCGCGCAGCGGTGTCGACCTGGCAATTCGCCGCGACGACTTCCACTGGGACAACCAGCTGTACAGCCAGAAAATCTGCGATGAATGGATCGGCCCGGTGTGCCACCCCGCCGCCTGCGGCTACCAGGTGCAACTGAAGGTC                                                     <  1:503105/177‑1                                                                       GCCCGCTGGACTTCGCGCGCAGCGGTGTCGACCTGGCAATTCGCCGCGACGACTTCCACTGGGACAACCAGCTGTACAGCCAGAAAATCTGCGATGAATGGATCGGCCCGGTGTGCCACCCCGCCGCCTGCGGCTACCAGGTGCAACTGAAGGTCGGGGTGGGTGGCATGGAAGCGCGGCAGGCGCGGGATCAGCCAGCGCATGGC  >  1:639489/1‑206                                                                                     GCGCGCAGCGGTGTCGCCCTGGCAATGCGCCGCGACGACTTCCACTGGGACAACCAGCTGTACAGCCAGAAAATCTGCGATGAATGGATCGGCCCGGTGTGCCACCCCGCCGCCTGCGGCTACCAGGTGCAACTGAAGGTCGGGGTGGGTGGCATGGAAGCGCGGCAG                          <  1:227565/168‑1                                                                                                                                                                                                                                                                                      CTGATCCCGCGCCTGCCGCGCTTCCATGCCACCCACCCCGACCTTCAGTTGCACCTGGTAGCCGCAGGCGGCCCGCTGGACTTCGCGCGCAGCGGTGTCGACCTGGCAATTCGCCGCGACGACTTCCACTGGGACAACCAGCTGTACAGCCAGAAAATCTGCGATGAATGGATCGGCCCGGTGTGCCACCCCGCCGCCTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/811933‑811732 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgcctgcgGCTACCAGGTGCAACTGAAGGTCGGGGTGGGTGGCATGGAAGCGCGGCAGGCGCGGGATCAGCCAGCGCATGGC  >  AE015451/811872‑811945

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.