New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 1200130	38 (0.870)	5 (0.120)	4/324	NT	11.6%	coding (985/1203 nt)	gspF	putative protein secretion protein for export
	?	AE015451	= 1200145	40 (0.970)					coding (1000/1203 nt)	gspF	putative protein secretion protein for export

GCGTCTGGCGCGCAGCCTGGCGATTCTCTGTGGCAGTGGCGTGGCCCTGCTCGAAGCCTTGCAAGTGGCCACCGAAACCATCGGCAACCGGCGTATCCGCCTGGCCATGGAGCAGGTGCGCCAACACGTGCAGGGCGGCACCAGCCTGCACCGTGCGCTGGATGCCAGCCAGCAATTCCCGCCGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1199943‑1200130 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgctgcCAACCATGTTCACCAGCAGCGGCGGGAATTGCTGGCTGGCATCCAGCGCACGGTGCAGGCTGGTGCCGCCCTGCACGTGTTGGCGCACCTGCTCCATGGCCAGGCGGATACGCCGGTTGCCGATGGTTTCGGTGGCCACTTGCAAGGCTTCGAGCAGGGCCACGCCACTGCCACAGAGAATCGCCAGGCTGCGCGCCAGACGCGCGCTTTCCAGCACCTG  <  AE015451/1200145‑1199926                                                                                                                                                                                                                                                                                                                                                                                                                          GCGTCTGGCGCGCAGCCTGGCGATTCTCTGTGGCAGTGGCGTGGCCCTGCTCGAAGCCTTGCAAGTGGCCACCGAAACCATCGGCAACCGGCGTATCCGCCTGGCCATGGAGCAGGTGCGCCAACACGTGCAGGGCGGCACCAGCCTGCACCGTGCGCTGGATGCCAGCCAGCAATTCCCGCCGCT                                                                                                                                                                                                                                >  2:156356/1‑186                                                                                                                                                             GCTGGATGCCAGCCAGCAATTCCCGCCGCTGCCAACCATGTTCACCAGCAGCGGCGGGAATTGCTGGCTGGCATCCAGCGCACGGTGCAGGCTGGgg                                                                                                                                                             >  2:562874/1‑95                                                                                                                                                             GCTGGATGCCAGCCAGCAATTCCCGCCGCTGCCAACCATGTTCACCAGCAGCGGCGGGAATTGCTGGCTGGCATCCAGCGCACGGTGCAGGCTGGTGCCGCCCTGCA                                                                                                                                                   >  2:507369/1‑107                                                                                                                                                                  ATGCCAGCCAGCAATTCCCGCCGCTGCCAACCATGTTCACCAGCAGCGGCGGGAATTGCTGGCTGGCATCCAGCGCACGGTGCAGGCTGGTGCCGCCCTGCACGTGTTGGCGCGCCTGCTCCATGGCCAGGCGGATACGCCGGTTGCCGATGGGTTCGGTGGCCACTCGCAAGGCCTCGA                                                                     >  1:321744/1‑180                                                                                                                                                                       AGCCAGCAATTCCCGCCGCTGCCAACCATGTTCACCAGCAGCGGC                                                                                                                                                                                                       >  2:390349/1‑45                                                                                                                                                                            GCAATTCCCGCCGCTGCCAACCATGTTCACCAGCAGCGGCGGGAATTGCTGGCTGGCATCCAGCGCACGGTGCAGGCTGGTGCCGCCCTGCACGTGTTGGCGCACCTGCTCCAT                                                                                                                             >  1:771215/1‑114                                                                                                                                                                                  CCCGCCGCTGCCAACCATGTTCACCAGCAGCGGCGGGAATTGCTGGCTGGCATCCAGCGCACGGTGCAGGCTGGTGCCGCCCTGCACGTGTTGGCGCACCTGCTCCATGGCCAGGCGGATACGCCGGTTGCCGATGGTTTCGGTGGCCACTTGCAAGGCTTCGAGCAGGGCCACGCCACTGCCACAGAGAATCGCCAGGCTGCGCGCCAGACGCGCGCTTTCCAGCACCTG  <  1:507371/231‑1                                                                                                                                                                                      CCGCTGCCAACCATGTTCACCAGCAGCGGCGGGAATTGCTGGCTGGCATCCAGCGCACGGTGCAGGCTGGTGCCGCCCTGCACGTGTTGGCGCACCTGCTCCATGGCCAGGCGGATACGCCGGTTGCCGATGGTTTCGGTGGCCACTTGCAAGGCTTCGAGCAGGGCCACGCCACTGCCACAGAGAATCGCCAGG                                  <  2:390172/195‑1                                                                                                                                                                                                                                                                                                                                                                                                                          GCGTCTGGCGCGCAGCCTGGCGATTCTCTGTGGCAGTGGCGTGGCCCTGCTCGAAGCCTTGCAAGTGGCCACCGAAACCATCGGCAACCGGCGTATCCGCCTGGCCATGGAGCAGGTGCGCCAACACGTGCAGGGCGGCACCAGCCTGCACCGTGCGCTGGATGCCAGCCAGCAATTCCCGCCGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1199943‑1200130 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgctgcCAACCATGTTCACCAGCAGCGGCGGGAATTGCTGGCTGGCATCCAGCGCACGGTGCAGGCTGGTGCCGCCCTGCACGTGTTGGCGCACCTGCTCCATGGCCAGGCGGATACGCCGGTTGCCGATGGTTTCGGTGGCCACTTGCAAGGCTTCGAGCAGGGCCACGCCACTGCCACAGAGAATCGCCAGGCTGCGCGCCAGACGCGCGCTTTCCAGCACCTG  <  AE015451/1200145‑1199926

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.