New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	1203170 =	29 (0.660)	3 (0.070)	3/326	NT	10.1%	coding (999/1089 nt)	xcpY	Type II secretion pathway protein XcpY
	?	AE015451	1203194 =	26 (0.620)					coding (1023/1089 nt)	xcpY	Type II secretion pathway protein XcpY

ACTGGCCAAGCACGCGCCATTGCGCAATGCCTTCGCGCAGGGCCAGGAAGGCCAGCAGCAGGGCGATCAGTCCCCAGGCGAACGTGATGCGATGACGCTGCAGCCAGTCACGGTTCATGAGGCTGCTCCCAGGTCGAAGATCACTTGGCCATCTTGAACCTGCACTGTGGCGCCAGCGGCAGCCGCCATATCAGGCCATGGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/1203374‑1203170 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atggcggcTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCAAGTGATCTTCGACCTGGGAGCAGCCTCATGAACCGTGACTGGCTGCAGCGTCATCGCATCACGTTCGCCTGGGGACTGATCGCCCTGCTGCTGGCCTTCCTGGCCCTGCGCGAAGGCATTGCGCAATGGCGCGTGCTTGGCCAGTGGCGTGTGCTGGC  >  AE015451/1203194‑1203387                                                                                                                                                                                                                                                                                                                                                                                                                 ACTGGCCAAGCACGCGCCATTGCGCAATGCCTTCGCGCAGGGCCAGGAAGGCCAGCAGCAGGGCGATCAGTCCCCAGGCGAACGTGATGCGATGACGCTGCAGCCAGTCACGGTTCATGAGGCTGCTCCCAGGTCGAAGATCACTTGGCCATCTTGAACCTGCACTGTGGCGCCAGCGGCAGCCGCCATATCAGGCCATG                                                                                                                                                                                                         <  2:306260/200‑1                  CATTGCGCAATGCCTTCGCGCAGGGCCAGGAAGGCCAGCAGCAGGGCGATCAGTCCCCAGGCGAACGTGATGCGATGACGCTGCAGCCAGTCACGGTTCATGAGGCTGCTCCCAGGTCGAAGATCACTTGGCCATCTTGAACCTGCACTGTGGCGCCAGCGGCAGCCGCCATATCAGGCCATGGCGGCTGCCGCTGGCGCCACAG                                                                                                                                                                                   >  1:562657/1‑205                  CATTGCGCAATGCCTTCGCGCAGGGCCAGGAAGGCCAGCAGCAGGGCGATCAGTCCCCAGGCGAACGTGATGCGATGACGCTGCAGCCAGTCACGGTTCATGAGGCTGCTCCCAGGTCGAAGATCACTTGGCCATCTTGAACCTGCACTGTGGCGCCAGCGGCAGCCGCCATATCAGGCCATGGCGGCTGCC                                                                                                                                                                                                <  2:562655/192‑1                           ATGCATTCGCGCAGGGCCAGGAAGGCCAGCAGCAGGGCGATCAGTCCCCAGGCGAACGGGATGCGATGACGCTGCAGCCAGTCACGGTTCATGAGGCTGCTCCCAGGTCGAAGATCACTTGGCCATCTTGAACCTGCACTGTGGCGCCAGCGGCAGCCGCCATATCAGGCCATGGCGGCTGC                                                                                                                                                                                                 <  1:61381/182‑1                                                                       cCCCCAGGCGAACGTGATGCGATGACGCTGCAGCCAGTCACGGTTCATGAGGCTGCTCCCAGGTCGAAGATCACTTGGCCATCTTGAACCTGCACTGTGGCGCCAGCGGCAGCCGCCATATCAGGCCATGGCGGCTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCC                                                                                                                                                                 <  1:753668/169‑1                                                                                                      AGCCAGTCACGGTTCATGAGGCTGCTCCCAGGTCGAAGATCACTTGGCCATCTTGAACCTGCACTGTGGCGCCAGCGGCAGCCGCCATATCAGGCCATGGCGGCTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCAAGTGATCTTCGACCTGG                                                                                                                                               <  2:694141/157‑1                                                                                                                                                                                                             CTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCAAGTGATCTTCGACCTGGGAGCAGCCTCATGAACCGTGACTGGCTGCAGCGTCATCGCATCACGTTCGCCTGGGGACTGATCGCCCTGCTGCTGGCCTTCCTGGCCCTGCGCGAAGGCATTGCGCAATGGCGCGTGCTTGGCCAGTGGCGTGTGCTGGC  >  1:668652/1‑195                                                                                                                                                                                                                                                                                                                                                                                                                 ACTGGCCAAGCACGCGCCATTGCGCAATGCCTTCGCGCAGGGCCAGGAAGGCCAGCAGCAGGGCGATCAGTCCCCAGGCGAACGTGATGCGATGACGCTGCAGCCAGTCACGGTTCATGAGGCTGCTCCCAGGTCGAAGATCACTTGGCCATCTTGAACCTGCACTGTGGCGCCAGCGGCAGCCGCCATATCAGGCCATGGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/1203374‑1203170 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atggcggcTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCAAGTGATCTTCGACCTGGGAGCAGCCTCATGAACCGTGACTGGCTGCAGCGTCATCGCATCACGTTCGCCTGGGGACTGATCGCCCTGCTGCTGGCCTTCCTGGCCCTGCGCGAAGGCATTGCGCAATGGCGCGTGCTTGGCCAGTGGCGTGTGCTGGC  >  AE015451/1203194‑1203387

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.