| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | 1203170 = | 29 (0.660) | 3 (0.070) | 3/326 | NT | 10.1% | coding (999/1089 nt) | xcpY | Type II secretion pathway protein XcpY |
| ? | AE015451 | 1203194 = | 26 (0.620) | coding (1023/1089 nt) | xcpY | Type II secretion pathway protein XcpY | |||||
TGGCGCAGCCAGGTCATTGCCGTGACCGGGGAGCAGGCCAGCCCTCGGCACGCGGCACAGGCCCTCAAGCGCCTGCGCGAGAGCGTACTGCAGCAGCAACTGCGTACACGTCAGCTAGACGACCTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCAAGTGATCTTCGACCTGGGAGCAGCCTCATGAACCGTGACTGGCTGCAGCGTCATCGCATCACGTTCGCCTGGGGACTGATCGCCCTGCTGCTGGCCTTCCTGGCCCTGCGCGAAGGCATTGCGCAATGGCGCGTGCTTGG > AE015451/1202937‑1203369 | tGGCGCAGCCAGGTCATTGCCGTGACCGGGGAGCAGGCCAGCCCTCGGCACGCGGCACAGGCCCTCAAGCGCCTGCGCGAGAGCGTACTGCAGCAGCAACTGCGTACACGTCAGCTAGACGACCTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTgcgc > 1:386568/1‑235 (MQ=255) gcgcAGCCAGGTCATTGCCGTGACCGGGGAGCAGGCCAGCCCTCGGCACGCGGCACAGGCCCTCAAGCGCCTGCGCGAGAGCGTACTGCAGCAGCAACTGCGTACACGTCAGCTAGACGACCTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGcgcc < 2:299453/234‑1 (MQ=255) ccAGGTCATTGCCGTGACCGGGGAGCAGGCCAGCCCTCGGCACGCGGCACAGGCCCTCAAGCGCCTGCGCGAGAGCGTACTGCAGCAGCAACTGCGTACACGTCAGCTAGACGACCTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGc > 1:718029/1‑236 (MQ=255) gTGACCGGGGAGCAGGCCAGCCCTCGGCACGCGGCACAGGCCCTCAAGCGCCTGCGCGAGAGCGTACTGCAGCAGCAACTGCGTACACGTCAGCTAGACGACCTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATggcgg < 1:710739/235‑1 (MQ=255) gccagcacacgccactggccaagcacgcgccattgcgcaatgccttcgcgcagggccaggaaggccagcagcagggcgatcagtccccaggcgaacgtgatgcgatgacgctgcagccagtcacggttcatgaggctgctcccaggtcgaagatcacttggccatcttgaacctgcactgtggcgccagcggcag > 1:668652‑M1/195‑195 (MQ=255) cacaGGCCCTCAAGCGCCTGCGCGAGAGCGTACTGCAGCAGCAACTGCGTACACGTCAGCTAGACGACCTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCAGGTTCAAGATg < 2:359280/234‑1 (MQ=255) caGCGCCTGCGCGAGGGCGTACTGCAGCAGCAACTGCGTACACGTCAGCTAGACGACCTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGc < 2:140901/196‑1 (MQ=255) gcCTGCGCGAGAGCGTACTGCAGCAGCAACTGCGTACACGTCAGCTAGACGACCTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCAAGTGATCTTCGAc < 1:449955/236‑1 (MQ=255) tGCGCGAGAGCGTACTGCAGCAGCAACTGCGTACACGTCAGCTAGACGACCTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCAAGTGATCCTCGACCTg > 1:322385/1‑236 (MQ=255) cagcaACTGCGTACACGTCAGCTAGACGACCTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATggcggcgggc > 1:131630/1‑164 (MQ=255) caACTGCGTACACGTCAGCTAGACGACCTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCAGGtt > 1:314215/1‑186 (MQ=255) gCGTACACGTCAGCTAGACGACCTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGgcg > 1:398217/1‑167 (MQ=255) gCGTACACGTCAGCTAGACGACCTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCAGGCTCAAGATGGCCAAGTGATCTTCGACCTGGGAGCAGCCt > 1:686021/1‑218 (MQ=255) gTCAGCTAGACGCCCTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCcaca < 2:161632/164‑1 (MQ=255) gTCAGCTAGACGACCTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATggcgg > 1:115706/1‑147 (MQ=255) tAGACGACCTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCAAGTGATCTTc > 1:367566/1‑188 (MQ=255) acCTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCGTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCAAGTGa < 2:562402/177‑1 (MQ=255) ccTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCAGGGTCAAGATGGccca > 1:250944/1‑170 (MQ=255) tGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGgccgcc > 1:203986/1‑137 (MQ=255) tGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCAAGTGATCTTCGACCTGGGAGCAGCCTCATGAACCGTGACTGGCTGCAGCGTCATCGCATCACGTTCGCCTGGGGACTGATCGCCctgctgc > 1:466896/1‑236 (MQ=255) gCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCAAGTGATCTTCGACCTGGGAGCAGCCCCATGAACCGTg > 1:277123/1‑181 (MQ=255) gACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCAAGTGATc > 2:557841/1‑147 (MQ=255) gACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCAAGTGATc < 1:557843/147‑1 (MQ=255) aCAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCAAGTGATCTTCGACCTGGGAGCAGCCTCATGAACCGTGACTGGCTGCAGCGTCATCGCATCACGTTCGCCTGGGGACTGATCGCCCTGCTGCTGGCCt > 1:726033/1‑236 (MQ=255) aggtcTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTg > 1:252407/5‑98 (MQ=255) gcCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCAAGTGATCTTCGACCTGGGAGCAGCCTCATGAACCGTGACTGGCTGCAGCGTc > 1:389450/1‑176 (MQ=255) ccaggtcgaagatcacttggccatcttgaacctgcactgtggcgccagcggcaGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCAAGTGATCTTCGACCTGGGAGCAGCCTCATGAACCGTGACTGGCt < 2:694141‑M1/104‑1 (MQ=255) cgcTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCAAGTGATCTTCGACCTGGGAGCAGCCTCATGAACCGTGACTGGCTGCAGCGTCATCGCATCACGTTCGCCTGGGGACTGATCGCCCTGCTGCTGGCCTTCCTGGCCCTGCGCGAAGGCATTgc < 2:476903/232‑1 (MQ=255) cTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCAAGTGATCTTCGACCTGGGAGCAGCCTCATGAAcc < 2:691122/142‑1 (MQ=255) tCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCCCAGGGCCGGGTcc > 2:231751/1‑89 (MQ=255) aGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCa < 2:173960/97‑1 (MQ=255) ggccatcttgaacctgcactgtggcgccagcggcaGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCAAGTGATCTTCGACCTGGGAGCAGCCTCATGAACCGTGACTGGCTGCAGCGTCATCGCATCACGTTCGCCtggggg < 1:753668‑M1/135‑2 (MQ=255) gTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCAGGTGCAAGATGGCCAAGTGATCTTCGACCTGGGAGCAGCCTCATGAACCGTGACTGGCTGCAGCGTCATCGCATCACGTTCGCCTGGGGACTGATCGCCCTGCTGCTGGCCTTCCTGGCCCTGCGCGAAGGCATTGCGCAATGGCGCGTGCTTgg < 1:185788/234‑1 (MQ=255) cTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGGGCCACAGTGCAGGGTCa > 2:151553/1‑71 (MQ=255) ctgtggcgccagcggcaGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCAAGTGATCTTCGACCTGGGAGCAGCCTCATGAACCGTGACTGGCTGCAGCGTCATCGCATCACGTTCGCCTGGGGACTGATCGCCCTGCTGCTGGCCTTCCTGGCCCTGCGCGAAGGCATTGCGCAATg > 1:562657‑M1/18‑205 (MQ=255) ggcaGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCAAGTGATCTTCGACCTGGGAGCAGCCTCATGAACCGTGACTGGCTGCAGCGTCATCGCATCACGTTCGCCTGGGGACTGATCGCCCTGCTGCTGGCCTTCCTGGCCCTGCGCGAAGGCATTGCGCAATg < 2:562655‑M1/188‑1 (MQ=255) gcaGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCAAGTGATCTTCGACCTGGGAGCAGCCTCATGAACCGTGACTGGCTGCAGCGTCATCGCATCCCGTTCGCCTGGGGACTGATCGCCCTGCTGCTGGCCTTCCTGGCCCTGCGCGAATGCAt < 1:61381‑M1/179‑1 (MQ=255) | TGGCGCAGCCAGGTCATTGCCGTGACCGGGGAGCAGGCCAGCCCTCGGCACGCGGCACAGGCCCTCAAGCGCCTGCGCGAGAGCGTACTGCAGCAGCAACTGCGTACACGTCAGCTAGACGACCTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCAAGTGATCTTCGACCTGGGAGCAGCCTCATGAACCGTGACTGGCTGCAGCGTCATCGCATCACGTTCGCCTGGGGACTGATCGCCCTGCTGCTGGCCTTCCTGGCCCTGCGCGAAGGCATTGCGCAATGGCGCGTGCTTGG > AE015451/1202937‑1203369 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |