New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	1346844 =	43 (0.980)	3 (0.070)	3/328	NT	7.3%	coding (49/807 nt)	udh	uronate dehydrogenase
	?	AE015451	1346872 =	35 (0.840)					coding (21/807 nt)	udh	uronate dehydrogenase

CAAAAGCCGCCCAAGCCTCATTGACAACACACAGAACCACCGCCAATAATCACCCAAGTCATACGACAACCTACAACAACTAACAACAAGAGCCGGCCATGACCACTACCCCCTTCAATCGCCTGCTGCTCACCGGAGCCGCAGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/1346990‑1346844 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaggcgATTGAAGGGGGTAGTGGTCATGGCCGGCTCTTGTTGTTAGTTGTTGTAGGTTGTCGTATGACTTGGGTGATTATTGGCGGTGGTTCTGTGTGTTGTCAATGAGGCTTGGG  >  AE015451/1346872‑1346981                                                                                                                                                                                                                                                                   CAAAAGCCGCCCAAGCCTCATTGACAACACACAGAACCACCGCCAATAATCACCCAAGTCATACGACAACCTACAACAACTAACAACAAGAGCCGGCCATGACCACTACCCCCTTCAATCGCCTGCTGCTCACCGGAGCCGCAGG                                                                                                                  <  2:465980/145‑1                                 AGAACCACCGCCAATAATCACCCAAGTCATACGACAACCTACAACAACTAACAACAAGAGCCGGCCATGACCACTACCCCCTTCAATCGCCTGCTGCTCACCGGAGCCGCAGGCGATTGAAGGGGGTAGTGGTCATGGCCGGCTCTTGTTGTTAGTTGTTGTAGGTTGTCGTATGACTTGGGTGATTATTGGCGGTGGT                            >  1:202341/1‑199                                           CCAATAATCACCCAAGTCATACGACAACCTACAACAACTAACAACAAGAGCCGGCCATGACCACTACCCCCTTCAATCGCCTGCTGCTCACCGGAGCCGC                                                                                                                     <  1:730539/100‑1                                           CCAATAATCACCCAAGTCATACGACAACCTACAACAACTAACAACAAGAGCCGGCCATGACCACTACCCCCTTCAATCGCCTGCTGCTCACCGGAGCCGC                                                                                                                     >  2:730537/1‑100                                                                   CAACCTACAACAACTAACAACAAGAGCCGGCCATGACCCCTCCCCCCTTCAATCGCCTGCTGCTCACCGGAGCCGCAGGCGATTGAAGGGGGTAGTGGTCATGGCCGGCTCTTGTTGTTAGTTGTTGTAGGTTGTCGTATGACTTGGGTGATTATTGGCGGTGGTTCTGTGT                     <  1:186795/172‑1                                                                                   ACAACAAGAGCCGGCCATGACCACTACCCCCTTCAATCGCCTGCTGCTCACCGGAGCCGCAGGCGATTGAAGGGGGTAGTGGTCATGGCCGGCTCTTGTTGTTA‑‑‑GTTGTAGGTTGTCGTATGACTTGGGTGATTATTGGCGGTGGTTCCGTGTGTTGTCGATGAGGCTTGGG  >  2:306796/1‑172                                                                                                                                                                                                                                                                   CAAAAGCCGCCCAAGCCTCATTGACAACACACAGAACCACCGCCAATAATCACCCAAGTCATACGACAACCTACAACAACTAACAACAAGAGCCGGCCATGACCACTACCCCCTTCAATCGCCTGCTGCTCACCGGAGCCGCAGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/1346990‑1346844 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaggcgATTGAAGGGGGTAGTGGTCATGGCCGGCTCTTGTTGTTAGTTGTTGTAGGTTGTCGTATGACTTGGGTGATTATTGGCGGTGGTTCTGTGTGTTGTCAATGAGGCTTGGG  >  AE015451/1346872‑1346981

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.