New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2554012 =	74 (1.690)	4 (0.090)	4/336	NT	5.1%	intergenic (+143/‑8)	PP_5SF/PP_2240	5S ribosomal RNA/putative ABC efflux transporter, permease/ATP‑binding protein
	?	AE015451	2554021 =	76 (1.770)					coding (2/1881 nt)	PP_2240	putative ABC efflux transporter, permease/ATP‑binding protein

TGTAAAACGCACGGCCAGAGTTGCGGCTGCAGTGAAGCTGACAAGGGTGATGAACGAGGCGATTGCCAGCCAGCTTAGGCTCTCTTGCAGGGCCTGATGCCAGTTCATTTCCATGGTAAGTATCCGTGCTGAGTATTTCCGCGAGCGTAGCATTACGCTGTCATTCGTCAGGTATAAATGACGCACATTTCATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2554205‑2554012 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATA  >  AE015451/2554021‑2554072                                                                                                                                                                                                                                                        ataagagacagCGGCCAGAGTTGCGGCTGCAGTGAAGCTGACAAGGGTGATGAACGAGGCGATTGCCAGCCAGCTTAGGCTCTCTTGCAGGGCCTGATGCCAGTTCATTTCCATGGTAAGTATCCGTGCTGAGTATTTCCGCGAGCGTAGCATTACGCTGTCATTCGTCAGGTATAAATGACGCACATTTCATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGC             <  1:675552/224‑1                          GCTGCAGTGAAGCTGACAAGGGTGATGAACGAGGCGATTGCCAGCCAGCTTAGGCTCTCTTGCAGGGCCTGATGCCAGTTCATTTCCATGGTAAGTATCCGTGCTGAGTATTTCCGCGAGCGTAGCATTACGCTGTCATTCGTCAGGTATAAATGACGCACATTTCATGTGCGTCATTTATACCTGACGAATGACAGCG                        >  2:675550/1‑199                                                                                                GATGCCAGTTCATTTCCATGGTAAGTATCCGTGCTGAGTATTTCCGCGAGCGTAGCATTACGCTGTCATTCGTCAGGTATAAATGACGCACATTTCATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATA  >  1:630184/1‑151                                                                                                GATGCCAGTTCATTTCCATGGTAAGTATCCGTGCTGAGTATTTCCGCGAGCGTAGCATTACGCTGTCATTCGTCAGGTATAAATGACGCACATTTCATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATA  <  2:630182/151‑1                                                                                                                                                                                                                                                        TGTAAAACGCACGGCCAGAGTTGCGGCTGCAGTGAAGCTGACAAGGGTGATGAACGAGGCGATTGCCAGCCAGCTTAGGCTCTCTTGCAGGGCCTGATGCCAGTTCATTTCCATGGTAAGTATCCGTGCTGAGTATTTCCGCGAGCGTAGCATTACGCTGTCATTCGTCAGGTATAAATGACGCACATTTCATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2554205‑2554012 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATA  >  AE015451/2554021‑2554072

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.