New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AE015451 2554012 =74 (1.690)4 (0.090) 4/336 NT 5.1% intergenic (+143/‑8) PP_5SF/PP_2240 5S ribosomal RNA/putative ABC efflux transporter, permease/ATP‑binding protein
?AE015451 2554021 = 76 (1.770)coding (2/1881 nt) PP_2240 putative ABC efflux transporter, permease/ATP‑binding protein

CAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATACTCAGCACGGATACTTACCATGGAAATGAACTGGCATCAGGCCCTGCAAGAGAGCCTAAGCTGGCTGGCAATCGCCTCGTTCATCACCCTTGTCAGCTTCACTGCAGCCGCAACTCTGGCCGTGCGTTTTACACGCTGGGGCAGCCAGTTCTGGCAGCTTGCCGGGCCCTATT  >  AE015451/2553798‑2554245
                                                                                                                                                                                                                      |                                                                                                                                                                                                                                         
cAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTtat                                                                                                                                                                                                                       <  1:680420/235‑1 (MQ=255)
    agtGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCCTTta                                                                                                                                                                                                                        >  1:485300/1‑230 (MQ=255)
         aaCGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGaa                                                                                                                                                                                                             <  1:728769/236‑1 (MQ=255)
           cGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGaa                                                                                                                                                                                                             <  2:486249/234‑1 (MQ=255)
              tGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACa                                                                                                                                                                                                        <  1:330545/236‑1 (MQ=255)
                cATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACa                                                                                                                                                                                                        >  2:684567/1‑234 (MQ=255)
                   cGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTa                                                                                                                                                                                                   >  1:32388/1‑236 (MQ=255)
                           gTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGACTGACAGCGTAATg                                                                                                                                                                                                >  2:367098/1‑231 (MQ=255)
                            tAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGc                                                                                                                                                                                          <  1:319346/236‑1 (MQ=255)
                                gtgGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCt                                                                                                                                                                                         >  2:801181/1‑233 (MQ=255)
                                gtgGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTcgc                                                                                                                                                                                      >  1:192756/1‑236 (MQ=255)
                                  ggggTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGa                                                                                                                                                                                                                 >  1:348953/1‑207 (MQ=255)
                                      tttCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGa                                                                                                                                                                                                              <  2:804586/206‑1 (MQ=255)
                                       ttCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATa                                                                                                                                                                               <  1:457201/236‑1 (MQ=255)
                                         ccccATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCAttt                                                                                                                                                                                                                         >  2:330351/1‑192 (MQ=255)
                                         ccccATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACa                                                                                                                                                                                                        <  1:234118/208‑1 (MQ=255)
                                         ccccATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACa                                                                                                                                                                                                        >  2:234116/1‑208 (MQ=255)
                                            cATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATACTCAg                                                                                                                                                                          >  1:276867/1‑236 (MQ=255)
                                            cATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATACTCAg                                                                                                                                                                          <  1:418070/236‑1 (MQ=255)
                                              tgtgAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATACTCa                                                                                                                                                                           <  1:543149/233‑1 (MQ=255)
                                                tgAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATACTCAGc                                                                                                                                                                         <  2:276865/233‑1 (MQ=255)
                                                     gTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACg                                                                                                                                                                                                               <  1:580255/190‑1 (MQ=255)
                                                       aGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATACTCAGCACGGATACt                                                                                                                                                                >  1:135848/1‑235 (MQ=255)
                                                         gTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAAt                                                                                                                                                                                                 >  2:352888/1‑200 (MQ=255)
                                                         gTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATACTAAGCACGGATACTTAc                                                                                                                                                             >  1:257969/1‑236 (MQ=255)
                                                          tCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATACTCAGc                                                                                                                                                                         <  2:727592/223‑1 (MQ=255)
                                                              cGTCAAGATTCATTTCGCAAACCCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATACTCAGCACGGATACTTACCATg                                                                                                                                                         <  2:135846/235‑1 (MQ=255)
                                                              cGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCt                                                                                                                                                                                                                   >  1:739105/1‑177 (MQ=255)
                                                              cGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGa                                                                                                                                                                                   >  1:28728/1‑209 (MQ=255)
                                                                   aGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATACTCAGCACGGATACTTACCATGGAAATg                                                                                                                                                   <  1:459187/236‑1 (MQ=255)
                                                                     aTTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATACTCAGCACGGATACTTACCATGGAAATg                                                                                                                                                   <  2:386609/234‑1 (MQ=255)
                                                                      ttCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTtat                                                                                                                                                                                                                       <  1:311119/165‑1 (MQ=255)
                                                                      ttCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTtat                                                                                                                                                                                                                       >  2:311117/1‑165 (MQ=255)
                                                                      ttCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATAc                                                                                                                                                                              >  1:729590/1‑206 (MQ=255)
                                                                           ttCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATACTCAGCACGGATACTTACCATGGAAATGAACTg                                                                                                                                              <  2:631952/233‑1 (MQ=255)
                                                                           ttCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATACTCAGCACGGATACTTACCATGGAAATGAACTGGc                                                                                                                                            <  1:43204/235‑1 (MQ=255)
                                                                                  aaCCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATACTCa                                                                                                                                                                           >  1:223164/1‑197 (MQ=255)
                                                                                  aaCCCCTATCGGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACGGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATACTCa                                                                                                                                                                           <  2:223162/197‑1 (MQ=255)
                                                                                        tATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAACACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATACTCAGCACGGATACTTACCATGGAAATGAACTGGCATCAGGCCCt                                                                                                                                  <  1:82516/232‑1 (MQ=255)
                                                                                            tGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATACTCa                                                                                                                                                                           <  1:91339/187‑1 (MQ=255)
                                                                                                cATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTACTGCTACg                                                                                                                                                                                           >  2:35624/1‑167 (MQ=255)
                                                                                                 aTGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTACTGCTACGCTCGCGGAAATACTCAGCACGGATACTTACCATGGAAATGAACTGGCATCAGGCCCTGCAAGAGAGCCTa                                                                                                                     >  1:445426/1‑236 (MQ=255)
                                                                                                 aTGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCt                                                                                                                                                                                         >  1:412907/1‑168 (MQ=255)
                                                                                                  tGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGCAATGTGCGTCATTTATACCTGACGAATGACAGCGAAATGCTACGCTCGCGGAAATACTCAGCACGGATACTTACCATGGa                                                                                                                                                       >  2:203600/1‑201 (MQ=255)
                                                                                                  tGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATACTCAGCACGGATACTTACCATGGAAATGAACTGGCATCAGGCCCTGCAagag                                                                                                                           >  1:520498/1‑229 (MQ=255)
                                                                                                   gCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATACTCAGCACGGATACTTACCATGGAACTGAACTGGCATCAGGCCCTGCAAGAGAGCCt                                                                                                                      >  2:301226/1‑233 (MQ=255)
                                                                                                       gTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATACTCAGCACGGATACTTACCATGGAAATGAACTGGCATCAGGCCCTGCAAGAGAGCCTAAgctgg                                                                                                               >  1:732185/1‑236 (MQ=255)
                                                                                                                ctGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATACTCAGCACGGATACTTACCATGGAAATGAACTGGCAt                                                                                                                                          >  1:297639/2‑200 (MQ=255)
                                                                                                                  gTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATACTCAGCACGGATACTTACCATGGAAATGAACTGGCATCAGGCCCTGCAAGAGAGCCTAAGCTGGCTGGCAATCGc                                                                                                    <  1:211549/236‑1 (MQ=255)
                                                                                                                   tCTTTGGTGGGCAAAAAAACTGGAACGGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATACTCAGCACGGATACTTa                                                                                                                                                              <  2:103176/177‑1 (MQ=255)
                                                                                                                    cTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATACTCAGCACGGATACTTACCATGGAAATGAACTGGCATCAGGCCCTGc                                                                                                                                >  1:619777/1‑206 (MQ=255)
                                                                                                                       tggtggGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATACTCAGCACGGATACTTa                                                                                                                                                              <  2:414242/173‑1 (MQ=255)
                                                                                                                             gCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCACGAAAAGTGCGTCATTTATACCTGACGAATGACAGCGTGATGCTACGCTCGCGGAAATACTCAGCACGGATACTTACCATGGAAATGAACTGGCATCAGGCCCTGCAAGAGAGCCTAAGCTGGCTGGCAATCGCCTc                                                                                                 <  1:448702/228‑1 (MQ=255)
                                                                                                                               aaaaaaaCTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATACTCAGCACGGATACTTACCATg                                                                                                                                                         >  2:695860/1‑170 (MQ=255)
                                                                                                                                aaaaaaCTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATACTCAGCACGGATACTTACCATGGAAATGAACTGGCATCAGGCCCTGCAAGAGAGCCTAAGCTGGCTGGCAATCGCCTCGTTCATCAcgc                                                                                      >  1:514278/1‑234 (MQ=255)
                                                                                                                                          aaCTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATACTCAGCACGGATACTTACCATGGAAATGAACTGGCATCAGGCCCTGCAAGAGAGCCTAAGCTGGCTGGCAATCGc                                                                                                    <  2:724022/212‑1 (MQ=255)
                                                                                                                                              gCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATa                                                                                                                                                                               <  1:356110/133‑1 (MQ=255)
                                                                                                                                              gCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATACTCAGCACGGATACTTACCATGGAAATGAACTGGCATCAGGCCCTGCAAGAGAGCCTAAGCTGGCTGGCAATCGCCTCGTTCATCACCCTTGTCAGCTTCAc                                                                         <  1:794998/235‑1 (MQ=255)
                                                                                                                                                                 cGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATCCCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATACTCAGCACGGATACTTACCATGGAAATGAACTGGCATCAGGCCCTGCAAGAGAGCCTAAGCTGGCTGGCAATCGCCTCGTTCATCACCCTTGTCAGCTTCACTGCAGCCGCAACTCTGGCCg                                                     <  1:104822/236‑1 (MQ=255)
                                                                                                                                                                  tatttccgcgagcgtagcattacgctgtcattcgtcaggtataaatgacgcaCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATACTCAGCACGGATACTTACCATGGAAATGAACTGGCATc                                                                                                                                         >  1:630184‑M1/53‑151 (MQ=255)
                                                                                                                                                                  tatttccgcgagcgtagcattacgctgtcattcgtcaggtataaatgacgcaCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATACTCAGCACGGATACTTACCATGGAAATGAACTGGCATc                                                                                                                                         <  2:630182‑M1/99‑1 (MQ=255)
                                                                                                                                                                      aTGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATACTCAGCACGGATACTTACCATGGAAATGCACTGGCATCAGGCCCTGCAAGAGAGCCTAAGCTGGCTGGCAATCGCCTc                                                                                                 >  2:89679/1‑187 (MQ=255)
                                                                                                                                                                      aTGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATACTCAGCACGGATACTTACCATGGAAATGAACTGGCATCAGGCCCTGCAAGAGAGCCTAAGCTGGCTGGCAATCGCCTCGTTCATCACCCTTg                                                                                   >  2:118758/1‑201 (MQ=255)
                                                                                                                                                                      aTGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATACTCAGCACGGATACTTACCATGGAAATGAACTGGCATCAGGCCCTGCAAGAGAGCCTAAGCTGGCTGGCAATCGCCTCGTTCATCACCCTTg                                                                                   >  1:473926/1‑201 (MQ=255)
                                                                                                                                                                         gCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATACTCAGCACGGATACTTACCATGGAAATGAACTGGCATc                                                                                                                                         <  1:555592/144‑1 (MQ=255)
                                                                                                                                                                           aCCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATACTCAGCACGGGTACTTACCATGGAAATGAACTGGCATCAGGCCCTGCAAGAGAGCCTAAGCTGGCTGGCAATCGCCTCGTTCATCACCCTTGTCAGCTTCACTGCAGCCGCAACTCTGGCCGTGCGTTTTac                                           <  1:233269/236‑1 (MQ=255)
                                                                                                                                                                             gcgtagcattacgctgtcattcgtcaggtataaatgacgcaCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATACTCAGCACGGATACTTACCATGGAAATGAACTGGCATCAGGCCCTGCAAGAGAGCCTAAGCTGGCTGGCAATCGCCTCGTTCATCACCCTTGTCAGCTTCACTGCAGCCGcaactctggccgctgtctcttat                                          <  1:675552‑M1/194‑12 (MQ=255)
                                                                                                                                                                                   tGCCGGTGTTCGCGGGTAAGCCCGCGCCTACAAATCATGAAATGTGCGTCATTTATCCCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATACTCAGCACGGATACTTACCATGGAAATGAACTGGCATCAGGCCCTGCAAGAGAGCCTAAGCTGGCTGGCAATCGCCTCGTTCATCACCCTTGTCAGCTTCAc                                                                         <  2:201013/198‑1 (MQ=255)
                                                                                                                                                                                    gCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATACTCAGCACGGATACTTACCATGGAAATGAACTGGCATCAGGCCCTGCa                                                                                                                               <  1:367100/143‑1 (MQ=255)
                                                                                                                                                                                        cgctgtcattcgtcaggtataaatgacgcaCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATACTCAGCACGGATACTTACCATGGAAATGAACTGGCATCAGGCCCTGCAAGAGAGCCTAAGCTGGCTGGCAATCGCCTCGTTCATCACCCTTGTCAGCTTCACTGCAGc                                                                   >  2:675550‑M1/31‑199 (MQ=255)
                                                                                                                                                                                                gggTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATACTCAGCACGGATACTTACCATGGAAATGAACTGGCATCAGGCCCTGCAAGAGAGCCTAAGCTGGCTGGCAATCGCCTCGTTCATCACCCTTGTCAGCTTCACTGCAGCCGCAAct                                                            >  1:201015/1‑198 (MQ=255)
                                                                                                                                                                                                      aCCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATACTCAGCACGGATACTTACCATGGAAATGAACTGGCATCAGGCCCTGCAAGAGAGCCTAAGCTGGCTGGCAATCGCCTCGTTCATCACCCTTGTCAGCTTCACTGCAGCCGCAACTCTGGCCGTGCGTTTTACACGCTGGGGCAGCCAGTTCTGGCa                   >  2:515835/1‑233 (MQ=255)
                                                                                                                                                                                                        ccGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATACTCAGCACGGATACTTACCATGGAAATGAACTGGCATCAGGCCCTGCAAGAGAGCCTAAGCTGGCTGGCAATCGCCTCGTTCATCACCCTTGTCAGCTTCACTGCAGCCGCAACTCTGGCCGTGCGTTTTaca                                          >  2:166435/1‑208 (MQ=255)
                                                                                                                                                                                                        ccGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATACTCAGCACGGATACTTACCATGGAAATGAACTGGCATCAGGCCCTGCAAGAGAGCCTAAGCTGGCTGGCAATCGCCTCGTTCATCACCCTTGTCAGCTTCACTGCAGCCGCAACTCTGGCCGTGCGTTTTACACGCTGGGGCAGCCAGTTCTGGCAGCTTg              <  1:801183/236‑1 (MQ=255)
                                                                                                                                                                                                             ccTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATACTCAGCACGGATACTTACCATGGAAATGAACTGGCATCAGGCCCTGCAAGAGAGCCTAAGCTGGCTGGCAATCGCCTCGTTCATCACCCTTGTCAGCTTCACTGCAGCCGCAACTCTGGCCGTGCGTTTTACACGCTGGGGCAGCCAGTTCTGGCAGCtt               <  2:342061/230‑1 (MQ=255)
                                                                                                                                                                                                               tACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATACTCAGCACGGATACTTACCATGGAAATGAACTGGCATCAGGCCCTGCAAGAGAGCCTAAGCTGGCTGGCAATCGCCTCGTTCATCACCCTTGTCAGCTTCACTGCAGCCGCAAct                                                            >  2:727159/1‑183 (MQ=255)
                                                                                                                                                                                                               gaCAAATCATAAAATGTGCGTCATTTATACCGGACGAATGACAGCGTAATGCTACGCTCGCGGAAATACTCAGCACGGATACTTACCATGGAAATGAACTGGCATCAGGCCCTGCAAGAGAGCCTAAGCTGGCTGGCAATCGCCTCGTTCATCACCCTTGTCAGCTTCACTGCAGCCGCAACTCTGGCCGTGCGTTTTACACGCTGGGGCAGCCAGTTCTGGc                    <  2:192754/222‑1 (MQ=255)
                                                                                                                                                                                                                aCAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATACTCAGCACGGATACTTACCATGGAAATGAACTGGCATCAGGCCCTGCAAGAGAGCCTAAGCTGGCTGGCAATCGCCTCGTTCATCACCCTTGTCAGCTTCACTGCAGCCGCAACTCTGGc                                                       <  1:107923/187‑1 (MQ=255)
                                                                                                                                                                                                                   aaTCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATACTCAGCACGGATACTTACCATGGAAATGAACTGGCATCAGGCCCTGCAAGAGAGCCTAAGCTGGCTGGCAATCGCCTCGTTCATCACCCTTGTCAGCTTCACTGCAGCCGCAACTCTGGCCGTGCGTTTTACACGCTGGGGCAGCCAGTTCTGGCAGCTTGCCGGGCCCTAt   >  1:625615/1‑236 (MQ=255)
                                                                                                                                                                                                                    aTCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATACTCAGCACGGATACTTACCATGGAAATGAACTGGCATCAGGCCCTGCAAGAGAGCCTAAGCTGGCTGGCAATCGCCTCGTTCATCACCCTTGTCAGCTTCACTGCAGCCGCAACTCTGGCCGTGCGTTTTACACGCTGGGGCAGCCAGTTCTGGCAGCTTGCCGGGCCCTAtt  <  1:515837/236‑1 (MQ=255)
                                                                                                                                                                                                                      |                                                                                                                                                                                                                                         
CAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGCGTAATGCTACGCTCGCGGAAATACTCAGCACGGATACTTACCATGGAAATGAACTGGCATCAGGCCCTGCAAGAGAGCCTAAGCTGGCTGGCAATCGCCTCGTTCATCACCCTTGTCAGCTTCACTGCAGCCGCAACTCTGGCCGTGCGTTTTACACGCTGGGGCAGCCAGTTCTGGCAGCTTGCCGGGCCCTATT  >  AE015451/2553798‑2554245

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.