New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3132656 =	16 (0.370)	3 (0.070)	3/324	NT	16.6%	coding (738/882 nt)	PP_2749	putative Branched‑chain amino acid ABC transporter, permease protein
	?	AE015451	3132706 =	15 (0.360)					coding (788/882 nt)	PP_2749	putative Branched‑chain amino acid ABC transporter, permease protein

GCAACGGCAGGCCCACTGGCCAGCGACGGCGCACCAGGGTCAGCGGCGCCTCGTCGAAGCCGGCGCCCAAGCGTGAAACGGTAGCGGTCATTGCGTCATACCCGTTCGATGGCCCGGTCGCCGAACAGGCCGGCCGGACGGATGTAAAGGAATATCAGGGCGAGGAAATAAGCGAACCAGGGCGTGATGCCGCCGCCGATCAGTGGGCCGATGTAGGCTTCGGCGAGGTTCTCGGCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3132895‑3132656 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggcggcgGCATCACGCCCTGGTTCGCTTATTTCCTCGCCCTGATATTCCTTTACATCCGTCCGGCCGGCCTGTTCGGCGACCGGGCCATCGAACGGGTATGACGCAATGACCGCTACCGTTTCACGCTTGGGCGCCGGCTTCGACGAGGCGCCGCTGACCCTGGTGCGCCGTCGCTGGCCAGTGGGCCTGCCGTTGCTGCTGCTGGTGGCCTTCGTCGGCTTGCCCTGGCTGGGCA  >  AE015451/3132706‑3132934                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GCAACGGCAGGCCCACTGGCCAGCGACGGCGCACCAGGGTCAGCGGCGCCTCGTCGAAGCCGGCGCCCAAGCGAGAAACGGTAGCGGTCATTGCGTCATACCCGTTCGATGGCCCGGTCGCCGAACAGGCCGGCCGGACGGATGTAAAGGAATATCAGGGCGAGGAAATAAGCGAACCAGGGCGTGATGCCGCCGCCGATCAGTGGGCCGATGTAGGCTTCGGCGAGGTTCTC                                                                                                                                                                                                                                              >  2:497043/1‑233                                          AGCGGCGCCTCGTCGAAGCCGGCGCCCAAGCGTGAAACGGTAGCGGTCATTGCGTCATACCCGTTCGATGGCCCGGTCGCCGAACAGGCCGGCCGGACGGATGTAAAGGAATATCAGGGCGAGGAAATAAGCGAACCAGGGCGTGATGCCGCCGCCGATCAGTGGGCCGATGTAGGCTTCGGCGAGGTTCTCGGCGGCGGCATCACGCCCTGGTTCGCTTATTTCCTCGCCCTG                                                                                                                                                                                                    <  2:687343/234‑1                                                                                                                      TCGCCGAACAGGCCGGCCGGACGGATGTAAAGGAATATCAGGGCGAGGAAATAAGCGAACCAGGGCGTGATGCCGCCGCCGATCAGTGGGCCGATGTAGGCTTCGGCGAGGTTCTCGGCGGCGG                                                                                                                                                                                                                                      >  2:285055/1‑124                                                                                                                                                                                                            TGGGCCGATGTAGGCTTCGGCGAGGTTCTCGGCGGCGGCATCACGCCCTGGTTCGCTTATTTCCTCGCCCTGATATTCCTTTACATCCGTCCGGCC                                                                                                                                                                            >  1:727964/1‑96                                                                                                                                                                                                            TGGGCCGATGTAGGCTTCGGCGAGGTTCTCGGCGGCGGCATCACGCCCTGGTTCGCTTATTTCCTCGCCCTGATATTCCTTTACATCCGTCCGGCC                                                                                                                                                                            <  2:727962/96‑1                                                                                                                                                                                                                                             GGCGGCATCACGCCCTGGTTCGCTTATTTCCTCGCCCTGATATTCCTTTACATCCGTCCGGCCGGCCTGTTCGGCGACCGGGCCATCGAACGGGTATGACGCAATGACCGCTACCGTTTCACGCTTGGGCGCCGGCTTCGACGAGGCGCCGCTGACCCTGGTGCGCCGTCGCTGGCCAGTGGGCCTGCCGTTGCTGCTGCTGGTGGCCTTCGTCGGCTTGCCCTGGCTGGGCA  <  2:580903/233‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GCAACGGCAGGCCCACTGGCCAGCGACGGCGCACCAGGGTCAGCGGCGCCTCGTCGAAGCCGGCGCCCAAGCGTGAAACGGTAGCGGTCATTGCGTCATACCCGTTCGATGGCCCGGTCGCCGAACAGGCCGGCCGGACGGATGTAAAGGAATATCAGGGCGAGGAAATAAGCGAACCAGGGCGTGATGCCGCCGCCGATCAGTGGGCCGATGTAGGCTTCGGCGAGGTTCTCGGCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3132895‑3132656 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggcggcgGCATCACGCCCTGGTTCGCTTATTTCCTCGCCCTGATATTCCTTTACATCCGTCCGGCCGGCCTGTTCGGCGACCGGGCCATCGAACGGGTATGACGCAATGACCGCTACCGTTTCACGCTTGGGCGCCGGCTTCGACGAGGCGCCGCTGACCCTGGTGCGCCGTCGCTGGCCAGTGGGCCTGCCGTTGCTGCTGCTGGTGGCCTTCGTCGGCTTGCCCTGGCTGGGCA  >  AE015451/3132706‑3132934

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.