New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3132656 =	16 (0.370)	3 (0.070)	3/324	NT	16.6%	coding (738/882 nt)	PP_2749	putative Branched‑chain amino acid ABC transporter, permease protein
	?	AE015451	3132706 =	15 (0.360)					coding (788/882 nt)	PP_2749	putative Branched‑chain amino acid ABC transporter, permease protein

TGGCCGACGATACCCGCGCGGCGCTGTCGCTGGGCATCAACCTCAACCGCATCTGGCAGATCGTCTGGGCCGTGGCCGGCATGGTCGGGCTGGTGGCCGGGCTGCTCTGGGGGGCGCGCCAGGGGGTGCAGTTCTCGCTCTCGCTGGTAGTGCTCAAGGCGCTGCCGGTGCTGATCATCGGCGGCTTCACCTCAATTGGCGGAGCCATCGTCGGCGGGCTGATCGTCGGCGCCGCCGAGAACCTCGCCGAAGCCTACATCGGCCCACTGATCGGCGGCGGCATCACGCCCTGGTTCGCTTATTTCCTCGCCCTGATATTCCTTTACATCCGTCCGGCCGGCCTGTTCGGCGACCGGGCCATCGAACGGGTATGACGCAATGACCGCTACCGTTTCACGCTTGGGCGCCGGCTTCGACGAGGCGCCGCTGACCCTGGTGCGCCGTCG  >  AE015451/3132427‑3132872                                                                                                                                                                                                                                      |                                                                                                                                                                                                                         tgcccagccagggcaagccgacgaaggccaccagcagcagcaacggcaggcccactggccagcgacggcgcaccagggtcagcggcgcctcgtcgaagccggcgcccaagcgtgaaacggtagcggtcattgcgtcatacccgttcgatggcccggtcgccgaacaggccggccggacggatgtaaaggaatatcagggcgaggaaataagcgaaccagggcgtgatgccgcc                                                                                                                                                                                                                       <  2:580903‑M1/4‑1 (MQ=255)                                           tcaaccGCATCTGGCAGATCGTCTGGGCCGTGGCCGGCATGGTCGGGCTGGTGGCCGGGCTGCTCTGGGGGGCGCGCCAGGGGGTGCAGTTCTCGCTCTCGCTGGTAGTGCTCAAGGCGCTGCCGGTGCTGATCATCGGCGGCTTCACCTCAATTGGCGGAGCCATCGTCGGCGGGCTGATCGTCGGCGCCGCCGAGAACCTCGCCGAAGCCTACATCGGCCCACt                                                                                                                                                                                    >  1:611957/1‑226 (MQ=255)                                              accGCATCTGGCAGATCGTCTGGGCCGTGGCCGGCATGGTCGGGCTGGTGGCCGGGCTGCTCTGGGGGGCGCGCCAGGGGGTGCAGTTCTCGCTCTCGCTGGTAGTGCTCAAGGCGCTGCCGGTGCTGATCATCGGCGGCTTCACCCCAATTGGCGGAGCCATCGTCGGCGGGCTGATCGTCGGCGCCGCCGAGAACCTCGCCGAAGCCTACATCGGCCCACTGa                                                                                                                                                                                  >  2:296275/1‑225 (MQ=255)                                                                                             gtggCCGGGCTGCTCTGGGGGGCGCGCCAGGGGGTGCAGTTCTCGCTCTCGCTGGTAGTGCTCAAGGCGCTGCCGGTGCTGATCATCGGCGGCTTCACCTCAATTGGCGGAGCCATCGTCGGCGGGCTGATCGTCGGCGCCGCCGAGAACCTCGCCGAAGCCTACATCGGCCCACTGATCGGCGGCGGCag                                                                                                                                                                     >  1:97903/1‑190 (MQ=255)                                                                                             gtggCCGGGCTGCTCTGGGGGGCGCGCCAGGGGGTGCAGTTCTCGCTCTCGCTGGTAGTGCTCAAGGCGCTGCCGGTGCTGATCATCGGCGGCTTCACCCCAATTGGCGGAGCCATCGTCGGCGGGCTGATCGTCGGCGCCGCCGAGAACCTCGCCGAAGCCTACATCGGCCCACTGATCGGCGGCGGCATCACGCCCTGGTTCGCTTATTTCCTCGCCCTGATATTCCTTTACAt                                                                                                                        <  1:296277/236‑1 (MQ=255)                                                                                                             ggggggCGCGCCAGGGGGTGCAGTTCTCGCTCTCGCTGGTAGTGCTCAAGGCGCTGCCGGTGCTGATCATCGGCGGCTTCACCTCAATTGGCGGAGCCATCGTCGGCGGGCTGATCGTCGGCGCCGCCGAGAACCTCGCCGAAGCCTACATCGGCCCACTGATCGGCGGCGGCATCACGCCCTGGTTCGCTTATTTCCTCGCCCTGa                                                                                                                                     <  2:548136/207‑1 (MQ=255)                                                                                                              gggggCGCGCCAGGGGGTGCAGTTCTCGCTCTCGCTGGTAGTGCTCAAGGCGCTGCCGGTGCTGATCATCGGCGGCTTCACCTCAATTGGCGGAGCCATCGTCGGCGGGCTGATCGTCGGCGCCGCCGAGAACCTCGCCGAAGCCTACATCGGCCCACTGATCGGCGGCGGCATCACGCCCTGGTTCGCTTATTTCCTCGCCCTGATATTCCTTTACATCCGTCCGGCCGGCCTGt                                                                                                       >  1:122232/1‑236 (MQ=255)                                                                                                                               tGCAGTTCTCGCTCTCGCTGGTAGTGCTCAAGGCGCTGCCGGTGCTGATCATCGGCGGCTTCACCTCAATTGGCGGAGCCATCGTCGGCGGGCTGATCGTCGGCGCCGCCGAGAACCTCGCCGAAGCCTACATCGGCCCACTGATCGGCGGCGGCATCACGCCCTGGTTCGCTTATTTCCTCGCCCTGATATTCCTTTACATCCGTCCGGCCGGCCTGTTCGGCGACCGGGCCATc                                                                                      <  1:389834/236‑1 (MQ=255)                                                                                                                                            ctcgctGGTAGTGCTCAAGGCGCTGCCGGTGCTGATCATCGGCGGCTTCACCTCAATTGGCGGAGCCATCGTCGGCGGGCTGATCGTCGGCGCCGCCGAGAACCTCGCCGAAGCCTACATCGGCCCACTGATCGGCGGCGGCATCACGCCCTGGTTCGCTTATTTCCTCGCCCTGATATTCCtt                                                                                                                             <  2:413770/184‑1 (MQ=255)                                                                                                                                                                       ggTGCTGATCATCGGCGGCTTCACCTCAATTGGCGGAGCCATCGTCGGCGGGCTGATCGTCGGCGCCGCCGAGAACCTCGCCGAAGCCTACATCGGCCCACTGATCGGCGGCGGCATCACGCCCTGGTTCGCTTATTTCCTCGCCCTGa                                                                                                                                     <  1:802953/149‑1 (MQ=255)                                                                                                                                                                           ggccggacggatgtaaaggaatatcagggcgaggaaataagcgaaccagggcgtgatgcCGCCGCCGAGAACCTCGCCGAAGCCTACATCGGCCCa                                                                                                                                                                                      >  1:727964‑M1/60‑96 (MQ=255)                                                                                                                                                                           ggccggacggatgtaaaggaatatcagggcgaggaaataagcgaaccagggcgtgatgcCGCCGCCGAGAACCTCGCCGAAGCCTACATCGGCCCa                                                                                                                                                                                      <  2:727962‑M1/37‑1 (MQ=255)                                                                                                                                                                                      cggcTTCACCTCAATTGGCGGAGCCATCGTCGGCGGGCTGATCGTCGGCGCCGCCGAGAACCTCGCCGAAGCCTACATCGGCCCACTGATCGGCGGCGGCAt                                                                                                                                                                     >  1:188519/1‑102 (MQ=255)                                                                                                                                                                                                   cagggcgaggaaataagcgaaccagggcgtgatgcCGCCGCCGAGAACCTCGCCGAAGCCTACATCGGCCCACTGATCGGCGGCGGCATCACGCCCTGGTTCGCTTATTTCCTCGCCCTGATATTCCTTTACATCCGTCCGGCCGGCCTGTTCGGCGACCGGGCCATCGAACGGGTATGACGCAATGACCGCTACCGTTTCACGCTTGGGCGCCGGCTTCGACGAGGCGCCGCt                    <  2:687343‑M1/199‑1 (MQ=255)                                                                                                                                                                                                      ggCGGAGCCATCGTCGGCGGGCTGATCGTCGGCGCCGCCGAGAACCTCGCCGAAGCCTACATCGGCCCACTGATCGGCGGCGGCATCACGCCCTGGTTCGCTTATTTCCTCGCCCTGATATTCCTTTACATCCGTCCGGCCGGCCTGTTCGGCGACCGGGCCATCGAACGGGTATGACGCAATGACCGCTACCGTTTCACGCTTGGGCGCCGGCTTCGACGAGGCGCCGCTGAcc                >  1:580905/1‑235 (MQ=255)                                                                                                                                                                                                            gCCATCGTCGGCGGGCTGATCGTCGGCGCCGCCGAGAACCTCGCCGAAGCCTACATCGGCCCACTGATCGGCGGCGGCATCACGCCCTGGTTCGCTTATTTCCTCGCCCTGATATTCCTTTACATCCGTCCGGCCGGCCTGTTCGGCGACCGGGCCATCGAACGGGTATGACGCAATGACCGCTACCGTTTCACGCTTggg                                            <  1:105287/201‑1 (MQ=255)                                                                                                                                                                                                               aTCGTCGGCGGGCTGATCGTCGGCGCCGCCGAGAACCTCGCCGAAGCCTACATCGGCCCACTGATCGGCGGCGGCATCACGCCCTGGTTCGCTTATTTCCTCGCCCTGATATTCCTTTACATCCGTCCGGCCGGCCTGTTCGTCGACCGGGCCAt                                                                                       >  2:15277/1‑155 (MQ=255)                                                                                                                                                                                                                    cggcggGCTGATCGTCGGCGCCGCCGAGAACCTCGCCGAAGCCTACATCGGCCCACTGATCGGCGGCGGCATCACGCCCTGGTTCGCTTATTTCCTCGCCCTGATATTCCTTTACATCCGTCCGGCCGGCCTGTTCGGCGACCGGGCCATCGAACGGGTATGACGCAATGACCGCTACCGTTTCACGCTTGGGCGCCGGCTTCGACGAGGCGCCGCTGACCCTGGTGCGCCGTCg  >  1:497045/1‑235 (MQ=255)                                                                                                                                                                                                                          gCTGATCGTCGGCGCCGCCGAGAACCTCGCCGAAGCCTACATCGGCCCACTGATCGGCGGCGGCATCACGCCCTGGTTCGCTTATTTCCTCGCCCTGATATTCCTTTACATCCGTCCGGCCGGCCTGTTCGGCGACCGGGCCATCGAACGGGTATGACGCCATGACCGCTACCGTTTCACGCTTGGGCGCCTGCTTCGACGAGGcgccg                      >  1:191981/1‑209 (MQ=255)                                                                                                                                                                                                                            tGATCGTCGGCGCCGCCGAGAACCTCGCCGAAGCCTACATCGGCCCACTGATCGGCGGCGGCATCACGCCCTGGTTCGCTTATTTCCTCGCCCTGa                                                                                                                                     <  2:754725/96‑1 (MQ=255)                                                                                                                                                                                                                                     cCGCCGCCGAGAACCTCGCCGAAGCCTACATCGGCCCACTGATCGGCGGCGGCATCACGCCCTGGTTCGCTTATTTCCTCGCCCTGATATTCCTTTACATCCGTCCGGCCGGCCTGTTCGGCGa                                                                                                >  2:285055‑M1/2‑124 (MQ=255)                                                                                                                                                                                                                                      |                                                                                                                                                                                                                         TGGCCGACGATACCCGCGCGGCGCTGTCGCTGGGCATCAACCTCAACCGCATCTGGCAGATCGTCTGGGCCGTGGCCGGCATGGTCGGGCTGGTGGCCGGGCTGCTCTGGGGGGCGCGCCAGGGGGTGCAGTTCTCGCTCTCGCTGGTAGTGCTCAAGGCGCTGCCGGTGCTGATCATCGGCGGCTTCACCTCAATTGGCGGAGCCATCGTCGGCGGGCTGATCGTCGGCGCCGCCGAGAACCTCGCCGAAGCCTACATCGGCCCACTGATCGGCGGCGGCATCACGCCCTGGTTCGCTTATTTCCTCGCCCTGATATTCCTTTACATCCGTCCGGCCGGCCTGTTCGGCGACCGGGCCATCGAACGGGTATGACGCAATGACCGCTACCGTTTCACGCTTGGGCGCCGGCTTCGACGAGGCGCCGCTGACCCTGGTGCGCCGTCG  >  AE015451/3132427‑3132872

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.