New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3463335	62 (1.420)	3 (0.070)	3/326	NT	4.8%	coding (1023/1929 nt)	PP_3078	putative ABC transporter, periplasmic binding protein
	?	AE015451	= 3463351	59 (1.420)					coding (1007/1929 nt)	PP_3078	putative ABC transporter, periplasmic binding protein
Rejected: Frequency below/above cutoff threshold.

TGGTGAACACTTCATCTGGCACTTGGCCGCGCAAGGGGGCGAGCAGCTTCAACTCGCCCGCATCCGGCAACTGGCGAGCGGCCAACGGCGTATTGGAGAACACGCTTTGCTGGCGGATGTACAGGTTGCGCATCATCTGCCGGTTGCTCCACTCGAAGTCCCATAACATACCCAGCGCCTGCCGCACACGGCGGTCCTTGAACTGCGGCTGGTCGAGGTTGAACACGAAACCCTGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3463097‑3463335 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgggccCGGCCAAACCGCAGGTGGCCCAGGGTTTCGTGTTCAACCTCGACCAGCCGCAGTTCAAGGACCGCCGTGTGCGGCAGGCGCTGGGTATGTTATGGGACTTCGAGTGGAGCAACCGGCAGATGATGCGCAACCTGTACATCCGCCAGCAAAGCGTGTTCTCCAATACGCCGTT  <  AE015451/3463351‑3463180                                                                                                                                                                                                                                                                                                                                                                                                                             TGGTGAACACTTCATCTGGCACTTGGCCGCGCAAGGGGGCGAGCAGCTTCAACTCGCCCGCATCCGGCAACTGGCGAGCGGCCAACGGCGTATTGGAGAACACGCTTTGCTGGCGGATGTACAGGTTGCGCATCATCTGCCGGTTGCTCCACTCGAAGTCCCATAACATACCCAGCGCCTGCCGCACACGGCGGTCCTTGAACTGCGGCTGGTCGAGGTTGAACACGAAACCCTGG                                                                                                                                                                                 >  1:758483/1‑236                               GCAAGGGGGCGAGCAGCGTCCACTCGCCCGCATCCGGCAACTGGCGAGCGGCCAACGGCGTATTGGAGAACACGCTTTGCTGGCGGATGTACAGGTTGCGCATCATCTGCCGGTTGCTCCACTCGAAGTCCCATAACATACCCAGCGCCTGCCGCACACGGCGGTCCTTGAACTGCGGCTGGTCGAGGTTGAACACGAAACCCTGGGCCCGGCCAAACCGC                                                                                                                                                                  <  2:661259/221‑1                                                                                                                                                                                                                 CTGGTCGAGGTTGAACACGAAACCCTGGGCCCGGCCAAACCGCAGGTGGCCCAGGGTTTCGTGTTCAACCTCGACCAGCCGCAGTTCAAGGACCGCCGTGTGCGGCAGGCGCTGG                                                                                          <  1:743887/115‑1                                                                                                                                                                                                                 CTGGTCGAGGTTGAACACGAAACCCTGGGCCCGGCCAAACCGCAGGTGGCCCAGGGTTTCGTGTTCAACCTCGACCAGCCGCAGTTCAAGGACCGCCGTGTGCGGCAGGCGCTGG                                                                                          >  2:743885/1‑115                                                                                                                                                                                                                                          TGGGCCCGGCCAAACCGCAGGTGGCCCAGGGTTTCGTGTTCAACCTCGACCAGCCGCAGTTCAAGGACCGCCGTGTGCGGCAGGCGCTGGGTATGTTATGGGACTTCGAGTGGAGCAACCGGCAGATGATGCGCAACCTGTACATCCGCCAGCAAAGCGTGTTCTCCAATACGCCGTT  >  1:284516/1‑178                                                                                                                                                                                                                                                                                                                                                                                                                             TGGTGAACACTTCATCTGGCACTTGGCCGCGCAAGGGGGCGAGCAGCTTCAACTCGCCCGCATCCGGCAACTGGCGAGCGGCCAACGGCGTATTGGAGAACACGCTTTGCTGGCGGATGTACAGGTTGCGCATCATCTGCCGGTTGCTCCACTCGAAGTCCCATAACATACCCAGCGCCTGCCGCACACGGCGGTCCTTGAACTGCGGCTGGTCGAGGTTGAACACGAAACCCTGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3463097‑3463335 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgggccCGGCCAAACCGCAGGTGGCCCAGGGTTTCGTGTTCAACCTCGACCAGCCGCAGTTCAAGGACCGCCGTGTGCGGCAGGCGCTGGGTATGTTATGGGACTTCGAGTGGAGCAACCGGCAGATGATGCGCAACCTGTACATCCGCCAGCAAAGCGTGTTCTCCAATACGCCGTT  <  AE015451/3463351‑3463180

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.