New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3524068	NA (NA)	3 (0.070)	3/320	NT	NA	coding (781/1533 nt)	PP_3114	transposase
	?	AE015451	= 3524250	NA (NA)					coding (963/1533 nt)	PP_3114	transposase

CTGGCCATGCTGCTGACCACCAAATACGTAGACGGCTTGCCGCTTCACCGCTTCGAAAAAGTGCTGGGGCGTCACGGTATCGATATCCCGCGCCAAACCCTGGCACGCTGGGTGATTCAATGCAGCGAGCACTTTCAGCCGCTGCTGAATCTGATGCGCGAAAGCCTGTTGAAGAGTCGGATCATCCACTGTGATGAAACACGTGTGCAGGTGTTGAAAGAGCCGGGGCGTGAGCCCAGCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3523825‑3524068 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccagcagccCAATCGCTCCAGCCCGTCCTGTGCAGCCAGCGCGTTGTAACCGGCGTAGTCGTCGGTCATGACATAGCCGCGATAGCCGTCCAGCAGGCGCACCGGCACCTCCTGCGCTCGGCTGGTGGCGTAGTCGAAAAGGATCACTGGTCGATCAGGTGGGCCGCCGGTTTGTACCCACATCCAGGATTGGCTGCTGGGCTCACGCCCCGGCTCTTTCAACACCTGCACACG  <  AE015451/3524250‑3524026                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CTGGCCATGCTGCTGACCACCAAATACGTAGACGGCTTGCCGCTTCACCGCTTCGAAAAAGTGCTGGGGCGTCACGGTATCGATATCCCGCGCCAAACCCTGGCACGCTGGGTGATTCAATGCAGCGAGCACTTTCAGCCGCTGCTGAATCTGATGCGCGAAAGCCTGTTGAAGAGTCGGATCATCCACTGTGATGAAACACGTGTGCAGGTGTTGAAAGAGCCGGGGCGTGAGC                                                                                                                                                                                                                                            <  1:711203/235‑1    GCCATGCTGCTGACCACCAAATACGTAGACGGCTTGCCGCTTCACCGCTTCGAAAAAGTGCTGGGGCGTCACGGTATCGATATCCCGCGCCAAACCCTGGCACGCTGGGTGATTCAATGCAGCGAGCACTTTCAGCCGCTGCTGAATCTGATGCGCGAAAGCCTGTTGAAGAGTCGGATCATCCACTGTGATGAAACACGTGTGCAGGTGTTGAAAGAGCCGGGGCGTGAGCCCA                                                                                                                                                                                                                                         >  1:775500/1‑235                                 CGGCTTGCCGCTTCACCGCTTCGAAAAAGTGCTGGGGCGTCACGGTATCGATATCCCGCGCCAAACCCTGGCACGCTGGGTGATTCAATGCAGCGAGCACTTTCAGCCGCTGCTGAATCTGATGCGCGAAAGCCTGTTGAAGAGTCGGATCATCCACTGTGATGAAACACGTGTGCAGGTGTTGAAAGAGCCGGGGCGTGAGC                                                                                                                                                                                                                                            <  2:324948/203‑1                                 CGGCTTGCCGCTTCACCGCTTCGAAAAAGTGCTGGGGCGTCACGGTATCGATATCCCGCGCCAAACCCTGGCACGCCGGGTGATTCAATGCAGCGAGCACTTTCAGCCGCTGCTGAATCTGATGCGCGAAAGCCTGTTGAAGAGTCGGATCATCCACTGTGATGAAACACGTGTGCAGGTGTTGAAAGAGCCGGGGCGTGAGC                                                                                                                                                                                                                                            >  1:324950/1‑203                                  GGCTTGCCGCTTCACCGCTTCGAAAAAGTGCTGGGGCGTCACGGTATCGATATCCCGCGCCAAACCCTGGCACGCTGGGTGATTCAATGCAGCGAGCACTTTCAGCCGCTGCTGAATCTGATGCGCGAAAGCCTGTTGAAGAGTCGGATCATCCACTGTGATGAAACACGTGTGCAGGTGTTGAAAGAGCCGGGGCGTGAGCCCAGC                                                                                                                                                                                                                                       <  2:785512/207‑1                                  GGCTTGCCGCTTCACCGCTTCGAAAAAGTGCTGGGGCGTCACGGTATCGATATCCCGCGCCAAACCCTGGCACGCTGGGTGATTCAATGCAGCGAGCACTTTCAGCCGCTGCTGAATCTGATGCGCGAAAGCCTGTTGAAGAGTCGGATCATCCACTGTGATGAAACACGTGTGCAGGGGTTGAAAGAGCCGGGGCGTGAGC                                                                                                                                                                                                                                            >  1:584675/1‑202                                        CCGCTTCACCGCGTCGAAAAAGTGCTGGGGCGTCACGGTATCGATATCCCGCGCCAAACCCTGGCACGCTGGGTGATTCAATGCAGCGAGCACTTTCAGCCGCTGCTGAATCTGATGCGCGAAAGCCTGTTGAAGAGTCGGATCATCCACTGTGATGAAACACGTGTGCAGGTGTTGAAAGAGCCGGGGCGTGAGCCCAGCA                                                                                                                                                                                                                                      <  2:71429/202‑1                                                                                        CCGCGCCAAACCCTGGCACGCTGGGTGATTCAATGCAGCGAGCACTTTCAGCCGCTGCTGAATCTGATGCGCGAAAGCCTGTTGAAGAGTCGGATCATCCACTGTGATGAAACACGTGTGCAGGTGTTGAAAGAGCCGGGGCGTGAGCCCAGC                                                                                                                                                                                                                                       <  2:78122/153‑1                                                                                         CGCGCCAAACCCTGGCACGCTGGGTGATTCAATGCAGCGAGCACTTTCAGCCGCTGCTGAATCTGATGCGCGAAAGCCTGTTGAAGAGTCGGATCATCCACTGTGATGAAACACGTGTGCAGGTGTTGAAAGAGCCGGGGCGTGAGCCCAGCA                                                                                                                                                                                                                                      <  1:505822/153‑1                                                                                         CGCGCCAAACCCTGGCACGCTGGGTGATTCAATGCAGCGAGCACTTTCAGCCGCTGCTGAATCTGATGCGCGAAAGCCTGTTGAAGAGTCGGATCATCCACTGTGATGAAACACGTGTGCAGGTGTTGAAAGAGCCGGGGCGTGAGCCCAGCA                                                                                                                                                                                                                                      >  2:505820/1‑153                                                                                               AAACCCTGGCACGCTGGGTGATTCAATGCAGCGAGCACTTTCAGCCGCTGCTGAATCTGATGCGCGAAAGCCTGTTGAAGAGTCGGATCATCCACTGTGATGAAACACGTGTGCAGGTGTTGAAAGAGCCGGGGCGTGAGCCCAGCA                                                                                                                                                                                                                                      <  2:124914/147‑1                                                                                                    CTGGCACGCTGGGTGATTCAATGCAGCGAGCACTTTCAGCCGCTGCTGAATCTGATGCGCGAAAGCCTGTTGAAGAGTCGGATCATCCACTGTGATGAAACACGTGTGCAGGTGTTGAAAGAGCCGGGGCGTGAGC                                                                                                                                                                                                                                            <  2:273868/136‑1                                                                                                    CTGGCACGCTGGGTGATTCAATGCAGCGAGCACTTTCAGCCGCTGCTGAATCTGATGCGCGAAAGCCTGTTGAAGAGTCGGATCATCCACTGTGATGAAACACGTGTGCAGGTGTTGAAAGAGCCGGGGCGTGAGC                                                                                                                                                                                                                                            >  1:273870/1‑136                                                                                                                                                                     CCTGTTGAAGAGTCGGATCATCCACTGTGATGAAACACGTGTGCAGGTGTTGAAAGAGCCGGGGCGTGAGCCCAGCAGCCCAATCGCTCCAGCCCGTCCTGTGCAGCCAGCGCGTTGTAACCGGCGTAGTCGTCGGTCATGACATAGCCGCGATAGCCGTCCAGCAGGCGCACCGGCACCTCCTGCGCTCGGCTGGTGGCGTAGTCGAAAAGGATCACTGGTCGATCAGGTGG                                                                          >  2:463800/1‑233                                                                                                                                                                                    GATCATCCACTGTGATGAAACACGTGTGCAGGTGTTGAAAGAGCCGGGGCGTGAGCCCAGCAGCCCAATCGCTCCAGCCCGTCCTGTGCAGCCAGCGCGTTGTAACCGGCGTAGTCGTCGGTCATGACATAGCCGCGATAGCCGTCCAGCAGGCGCACCGGCACCTCCTGCGCTCGGCTGGTGGCGTAGTCGAAAAGGATCACTGGTCGATCAGGTGGGCCGCCGGTTTGTACCCA                                                        <  1:463802/236‑1                                                                                                                                                                                                                 AGGTGTTGAAAGAGCCGGGGCGTGAGCCCAGCAGCCCAATCGCTCCAGCCCGTCCTGTGCAGCCAGCGCGTTGTAACCGGCGTAGTCGTCGGTCATGACATAGCCGCGATAGCCGTCCAGCAGGCGCACCGGCACCTCCTGCGCTCGGCTGGTGGCGTAGTCGAAAAGGATCACTGGTCGATCAGGTGGGCCGCCGGT                                                                 >  1:14231/1‑198                                                                                                                                                                                                                                          GCCCAGCAGCCCAATCGCTCCAGCCCGTCCTGTGCAGCCAGCGCGTTGTAACCGGCGTAGTCGTCGGTCATGACATAGCCGCGATAGCCGTCCAGCAGGCGCACCGGCACCTCCTGCGCTCGGCTGGTGGCGTAGTCGAAAAGGATCACTGGTCGATCAGGTGGGCCGCCGGTTTGTACCCACATCCAGGATTGGCTGCTGGGCTCACGCCCCGGCTCTTTCAACACCTGCACACG  <  1:74858/236‑1                                                                                                                                                                                                                                           CCCAGCAGCCCAATCGCTCCAGCCCGTCCTGTGCAGCCAGCGCGTTGTAACCGGCGTAGTCGTCGGTCATGACATAGCCGCGATAGCCGTCCAGCAGGCGCACCGGCACCTCCTGCGCTCGGCTGGTGGCGTAGTCGAAAAGGATCACTGGTCGATCAGGTGGGCCGCCGGTTTGTACCCACATCCAGGATTGG                                           <  2:705807/194‑1                                                                                                                                                                                                                                                CAGCCCAATCGCTCCAGCCCGTCCTGTGCAGCCAGCGCGTTGTAACCGGCGTAGTCGTCGGTCATGACATAGCCGCGATAGCCGTCCAGCAGGCGCACCGGCACCTCCTGCGCTCGGCTGGTGGCGTAGTCGAAAAGGATCACTGGTCGATCAGGTGGGCCGCCGGTTTGTACCCACATCCAGGATTGGCTGCTGGGCTCACGCCCCGGCTCTTTCAACACCTGCACACG  >  2:548255/1‑230                                                                                                                                                                                                                                                   CCCAATCGCTCCAGCCCGTCCTGTGCAGCCAGCGCGTTGTAACCGGCGTAGTCGTCGGTCATGACATAGCCGCGATAGCCGTCCAGCAGGCGCACCGGCACCTCCTGCGCTCGGCTGGTGGCGTAGTCGAAAAGGATCACTGGTCGATCAGGTGGGCCGCCGGTTTGTAC                                                           >  2:602669/1‑170                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CTGGCCATGCTGCTGACCACCAAATACGTAGACGGCTTGCCGCTTCACCGCTTCGAAAAAGTGCTGGGGCGTCACGGTATCGATATCCCGCGCCAAACCCTGGCACGCTGGGTGATTCAATGCAGCGAGCACTTTCAGCCGCTGCTGAATCTGATGCGCGAAAGCCTGTTGAAGAGTCGGATCATCCACTGTGATGAAACACGTGTGCAGGTGTTGAAAGAGCCGGGGCGTGAGCCCAGCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3523825‑3524068 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccagcagccCAATCGCTCCAGCCCGTCCTGTGCAGCCAGCGCGTTGTAACCGGCGTAGTCGTCGGTCATGACATAGCCGCGATAGCCGTCCAGCAGGCGCACCGGCACCTCCTGCGCTCGGCTGGTGGCGTAGTCGAAAAGGATCACTGGTCGATCAGGTGGGCCGCCGGTTTGTACCCACATCCAGGATTGGCTGCTGGGCTCACGCCCCGGCTCTTTCAACACCTGCACACG  <  AE015451/3524250‑3524026

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.