New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3774239 =	30 (0.690)	4 (0.100)	4/326	NT	12.2%	coding (942/1008 nt)	PP_5743	putative TonB‑dependent receptor protein
	?	AE015451	3774256 =	29 (0.700)					coding (959/1008 nt)	PP_5743	putative TonB‑dependent receptor protein

AGGGCTTGCCACCACCGTCCTGGGAGTTCTCCTGGAGCCCGCTCGATGGCAAAGGCGCGGGTAGCTTCAGGCGCTGGCTGCCGGTGCCCGGCTAAACCATGATCAGTTGACGGTGGCCGGCCGCCGTCCTTGCACCCTTTGCCCAAGCTCCAACATGAGGTTACCGACGATGGATGTACTTCAAGCCATGCGCGCGTTCAACTGCGTGGTTCAGGCTGGCAGCCTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3774465‑3774239 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcctgaACCACGCAGTTGAACGCGCGCATGGCTTGAAGTACATCCATCGTCGGTAACCTCATGTTGGAGCTTGGGCAAAGGGTGCAAGGACGGCGGCCGGCCACCGTCAACTGATCATGGTTTAGCCGGGCACCGGCAGCCAGCGCCTGAAGCTACCCGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCAGGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACG  >  AE015451/3774256‑3774486                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AGGGCTTGCCACCACCGTCCTGGGAGTTCTCCTGGAGCCCGCTCGATGGCAAAGGCGCGGGTAGCTTCAGGCGCTGGCTGCCGGTGCCCGGCTAAACCATGATCAGTTGACGGTGGCCGGCCGCCGTCCTTGCACCCTTTGCCCAAGCTCCAACATGAGGTTACCGACGATGGATGTACTTCAAGCCATGCGCGCGTTCAACTGCGTGGTTCAGGCTGGCAGCCTGAACCACGCAG                                                                                                                                                                                                                                <  1:597429/236‑1  GGGCTTGCCACCACCGTCCTGGGAGTTCTCCTGGAGCCCGCTCGATGGCAAAGGCGCGGGTAGCTTCAGGCGCTGGCTGCCGGTGCCCGGCTAAACCATGATCAGTTGACGGTGGCCGGCCGCCGTCCTTGCACCCTTTGCCCAAGCTCCAACATGAGGTTACCGACGATGGATGTACTTCAAGCCATGCGCGCGTTCAACTGCGTGGTTCAGGCTGGCAGC                                                                                                                                                                                                                                             >  1:382205/1‑222                                                            tGTAGCTTCAGGCGCTGGCTGCCGGTGCCCGGCTAAACCATGATCAGTTGACGGTGGCCGGCCGCCGTCCTTGCACCCTTTGCCCAAGCTCCAACATGAGGTTACCGACGATGGATGTACTTCAAGCCATGCGCGCGTTCAACTGCGTGGTTCAGGCTGGCAGCCTGAACCACGCAGTTGAACGCGCGCATGGCTTGAAGTACATCCATCGTCGGTAA                                                                                                                                                                                       <  1:196660/217‑1                                                                                                                                    GCACCCTTTGCCCAAGCTCCAACATGAGGTTACCGGCGATGGATGTACTTCAAGCCATGCGCGCGTTCAACTGCGTGGTTCAGGCTGGCAGCCTGAACCACGCAGTTGAACGCGCGCATGGCTTGAAGTACAT                                                                                                                                                                                                    <  1:110126/133‑1                                                                                                                                                                                                   CGTTCAACTGCGTGGTTCAGGCTGGCAGCCTGATCCACGCAGTTGAGCGCGCGCATGGCTTGAAGTACATCCATCGTCGGTAACCTCATGTTGGAGCTTGGG                                                                                                                                                                    <  2:542261/102‑1                                                                                                                                                                                                                               CCTGAACCACGCAGTTGAACGCGCGCATGGCTTGAAGTACATCCATCGTCGGTAACCTCATGTTGGAGCTTGGGCAAAGGGTGCAAGGACGGCGGCCGGCCACCGTCAACTGATCATGGTTTAGCCGGGCACCGGCAGCCAGCGCCTGAAGCTACCCGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCAGGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACG  <  2:557164/236‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AGGGCTTGCCACCACCGTCCTGGGAGTTCTCCTGGAGCCCGCTCGATGGCAAAGGCGCGGGTAGCTTCAGGCGCTGGCTGCCGGTGCCCGGCTAAACCATGATCAGTTGACGGTGGCCGGCCGCCGTCCTTGCACCCTTTGCCCAAGCTCCAACATGAGGTTACCGACGATGGATGTACTTCAAGCCATGCGCGCGTTCAACTGCGTGGTTCAGGCTGGCAGCCTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3774465‑3774239 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcctgaACCACGCAGTTGAACGCGCGCATGGCTTGAAGTACATCCATCGTCGGTAACCTCATGTTGGAGCTTGGGCAAAGGGTGCAAGGACGGCGGCCGGCCACCGTCAACTGATCATGGTTTAGCCGGGCACCGGCAGCCAGCGCCTGAAGCTACCCGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCAGGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACG  >  AE015451/3774256‑3774486

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.