New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AE015451 = 464749329 (0.660)3 (0.070) 3/324 NT 8.4% coding (2058/2112 nt) fusB Elongation factor G 2
?AE015451 = 4647758 38 (0.920)coding (1381/1461 nt) PP_4112 Sulphate transporter

AGGCGGCGCAGTGTTGCTGGAGCCGGTGATGAAGGTAGAGGTGGTGACGCCGGAGGAATATCAGGGCGACATCCTCGGCGACTTGAGCCGACGTCGCGGCATGATCCAGGACGGTGATGAAACACCGGCTGGCAAGGTGATACGTGCCGAAGTGCCGTTGGGTGAAATGTTCGGCTACGCCACCTCGATGCGCTCGATGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTATGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4647250‑4647493
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctatgccAAGGCGGGCAAGCATTTGCGCGTGGTGCATTTGTCGGAGCGGTGCAAGAAGCTGTTGAAGCGGGCGGGCGA  <  AE015451/4647758‑4647688
                                                                                                                                                                                                                                                                                                                           
AGGCGGCGCAGTGTTGCTGGAGCCGGTGATGAAGGTAGAGGTGGTGACGCCGGAGGAATATCAGGGCGACATCCTCGGCGACTTGAGCCGACGTCGCGGCATGATCCAGGACGGTGATGAAACACCGGCTGGCAAGGTGATACGTGCCGAAGTGCCGTTGGGTGAAATGTTCGGCTACGCCACCTCGATGCGCTCGATGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCC                                                                                 >  1:698621/1‑236
                                                                                                        TCCAGGACGGTGATGAAACACCGGCTGGCAAGGTGATACGTGCCGAAGTGCCGTTGGGTGAAATGTTCGGCTACGCCACCTCGATGCGCTCGATGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTATGCCAAGGCGGGCAAGCATTTGCGCGTGGTGCATTTGTCGGAGCGGTGCAAGAAGCTGTTGAAGCGGGCGGGCGA  <  2:310282/211‑1
                                                                                                                     TGAAACACCGGCTGGCAAGGTGATACGTGCCGAAGTGCCGATGGGTGAAATGTTCGGCTACGCCACCTCGATGCGCTCGATGACCCAGGGCCGGGCCAGCTTCTCGGTGGCGCTCATCCGCT                                                                              >  2:651899/1‑122
                                                                                                                                                                                    CACCTCGATGCGCTCGATGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTATGCCAAGGCGGGCAAGCATTTGCGCGTGGTGCATTTGTCG                                     >  1:450058/1‑100
                                                                                                                                                                                    CACCTCGATGCGCTCGATGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTATGCCAAGGCGGGCAAGCATTTGCGCGTGGTGCATTTGTCG                                     <  2:450056/100‑1
                                                                                                                                                                                                                                                                                                                           
AGGCGGCGCAGTGTTGCTGGAGCCGGTGATGAAGGTAGAGGTGGTGACGCCGGAGGAATATCAGGGCGACATCCTCGGCGACTTGAGCCGACGTCGCGGCATGATCCAGGACGGTGATGAAACACCGGCTGGCAAGGTGATACGTGCCGAAGTGCCGTTGGGTGAAATGTTCGGCTACGCCACCTCGATGCGCTCGATGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTATGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4647250‑4647493
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctatgccAAGGCGGGCAAGCATTTGCGCGTGGTGCATTTGTCGGAGCGGTGCAAGAAGCTGTTGAAGCGGGCGGGCGA  <  AE015451/4647758‑4647688

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.