New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4647493	29 (0.660)	3 (0.070)	3/324	NT	8.4%	coding (2058/2112 nt)	fusB	Elongation factor G 2
	?	AE015451	= 4647758	38 (0.920)					coding (1381/1461 nt)	PP_4112	Sulphate transporter

GGTGATGAAGGTAGAGGTGGTGACGCCGGAGGAATATCAGGGCGACATCCTCGGCGACTTGAGCCGACGTCGCGGCATGATCCAGGACGGTGATGAAACACCGGCTGGCAAGGTGATACGTGCCGAAGTGCCGTTGGGTGAAATGTTCGGCTACGCCACCTCGATGCGCTCGATGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTATGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTC  >  AE015451/4647274‑4647722                                                                                                                                                                                                                            |                                                                                                                                                                                                                                      ggTGATGAAGGTAGAGGTGGTGACGCCGGAGGAATATCAGGGCGACATCCTCGGCGACTTGAGCCGACGTCGCGGCATGATCCAGGACGGTGATGAAACACCGGCTGGCAAGGTGATACGTGCCGAAGTGCCGTTGGGTGAAATGTTCGGCTACGCCACCTCGATGCGCTCGATGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTATGCCGAGGCCCCGGc                                                                                                                                                                                                                            >  1:259937/1‑231 (MQ=255)                            ggaggaATATCAGGGCGACATCCTCGGCGACTTGAGCCGACGTCGCGGCATGATCCAGGACGGTGATGAAACACCGGCTGGCAAGGTGATACGTGCCGAAGTGCCGTTGGGTGAAATGTTCGGCTACGCCACCTCGATGCGCTCGATGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTATGCCGAGGcc                                                                                                                                                                                                                                 >  2:721172/1‑199 (MQ=255)                            ggaggaATATCAGGGCGACATCCTCGGCGACTTGAGCCGACGTCGCGGCATGATCCAGGACGGTGATGAAACACCGGCTGGCAAGGTGATACGTGCCGAAGTGCCGTTGGGTGAAATGTTCGGCTACGCCACCTCGATGCGCTCGATGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTATGCCGAGGcc                                                                                                                                                                                                                                 <  1:721174/199‑1 (MQ=255)                             gaggaATATCAGGGCGACATCCTCGGCGACTTGAGCCGACGTCGCGGCATGATCCAGGACGGTGATGAAACACCGGCTGGCAAGGTGATACGTGCCGAAGTGCCGTTGGGTGAAATGTTCGGCTACGCCACCTCGATGCGCTCGATGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTATGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGcc                                                                                                                                                                                            <  1:318273/235‑1 (MQ=255)                                            gACATCCTCGGCGACTTGAGCCGACGTCGCGGCATGATCCAGGACGGTGATGAAACACCGGCTGGCAAGGTGATACGTGCCGAAGTGCCGTTGGGTGAAATGTTCGGCTACGCCACCTCGATGCGCTCGATGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTATGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCg                                                                                                                                                                              >  2:343285/1‑234 (MQ=255)                                                tCCTCGGCGACTTGAGCCGACGTCGCGGCATGATCCAGGACGGTGATGAAACACCGGCTGGCAAGGTGATACGTGCCGAAGTGCCGTTGGGTGAAATGTTCGGCTACGCCACCTCGATGCGCTCGATGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTATGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTtctc                                                                                                                                                                        >  1:746977/1‑236 (MQ=255)                                                      gCGACTTGAGCCGACGTCGCGGCATGATCCAGGACGGTGATGAAACACCGGCTGGCAAGGTGATACGTGCCGAAGTGCCGTTGGGTGAAATGTTCGGCTACGCCACCTCGATGCGCTCGATGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTATGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGt                                                                                                                                                                            >  2:575869/1‑226 (MQ=255)                                                              aGCCGACGTCGCGGCATGATCCAGGACGGTGATGAAACACCGGCTGGCAAGGTGATACGTGCCGAAGTGCCGTTGGGTGAAATGTTCGGCTACGCCACCTCGATGCGCTCGATGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTATGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGc                                                                                                                                                              >  1:561032/1‑232 (MQ=255)                                                                      tCGCGGCATGATCCAGGACGGTGATGAAACACCGGCTGGCAAGGTGATACGTGCCGAAGTGCCGTTGGGTGAAATGTTCGGCTACGCCACCTCGATGCGCTCGATGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTATGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGt                                                                                                                                                  <  1:633673/236‑1 (MQ=255)                                                                         cgGCATGATCCAGGACGGTGATGAAACACCGGCTGGCAAGGTGATACGTGCCGAAGTGCCGTTGGGTGAAATGTTCGGCTACGCCACCTCGATGCGCTCGATGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTATGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTaa                                                                                                                                                <  1:311668/235‑1 (MQ=255)                                                                                 tCCAGGACGGTGATGAAACACCGGCTGGCAAGGTGATACGTGCCGAAGTGCCGTTGGGTGAAATGTTCGGCTACGCCACCTCGATGCGCTCGATGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTATGCCaaggcgggcaagcatttgcgcgtggtgcatttgtcggagcggtgcaagaagctgttgaagcgggcgggcga                                                                                                                                                                <  2:310282‑M1/211‑72 (MQ=255)                                                                                             atgaAACACCGGCTGGCAAGGTGATACGTGCCGAAGTGCCGTTGGGTGAAATGTTCGGCTACGCCACCTCGATGCGCTCGATGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTATGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGcc                                                                                                                           <  1:143702/236‑1 (MQ=255)                                                                                              tgaAACACCGGCTGGCAAGGTGATACGTGCCGAAGTGCCGTTGGGTGAAATGTTCGGCTACGCCACCTCGATGCGCTCGATGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTATGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGt                                                                                                                                                                            >  2:158153/1‑186 (MQ=255)                                                                                              tgaAACACCGGCTGGCAAGGTGATACGTGCCGAAGTGCCGTTGGGTGAAATGTTCGGCTACGCCACCTCGATGCGCTCGATGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTATGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTcg                                                                                                                                                       >  1:706756/1‑207 (MQ=255)                                                                                              tgaAACACCGGCTGGCAAGGTGATACGTGCCGAAGTGCCGTTGGGTGAAATGTTCGGCTACGCCACCTCGATGCGCTCGATGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTATGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCggg                                                                                                                                                   >  1:550246/1‑211 (MQ=255)                                                                                                          tGGCAAGGTGATACGTGCCGAAGTGCCGTTGGGTGAAATGTTCGGCTACGCCACCTCGATGCGCTCGATGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTATGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTcc                                                                                                                                       >  2:441049/1‑211 (MQ=255)                                                                                                                        gTGCCGAAGTGCCGTTGGGTGAAATGTTCGGCTACGCCACCTCGATGCGCTCGATGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTATGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCt                                                                                                                                      <  2:500378/198‑1 (MQ=255)                                                                                                                             gAAGTGCCGTTGGGTGAAATGTTCGGCTACGCCACCTCGATGCGCTCGATGACCCAGGGCCGGGCCAGCTTCTCGATGGAGGTCACCCGCTATGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCtt                                                                                                                                                         >  2:523228/1‑174 (MQ=255)                                                                                                                                    cGTTGGGTGAAATGTTCGGCTACGCCACCTCGATGCGCTCGATGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTATGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGcc                                                                                                                           <  2:576779/197‑1 (MQ=255)                                                                                                                                      ttGGGTGAAATGTTCGGCTACGCCACCTCGATGCGCTCGATGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTATGCCGAg                                                                                                                                                                                                                                    >  1:503938/1‑90 (MQ=255)                                                                                                                                      ttGGGTGAAATGTTCGGCTACGCCACCTCGATGCGCTCGATGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTATGCCGAg                                                                                                                                                                                                                                    <  2:503936/90‑1 (MQ=255)                                                                                                                                      ttGGGTGAAATGTTCGGCTACGCCACCTCGATGCGCTCGATGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTATGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCCCTTCGCgg                                                                                                                                                    >  2:245854/1‑170 (MQ=255)                                                                                                                                         ggTGAAATGTTCGGCTACGCCACCTCGATGCGCTCGATGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTATGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTca                                                                                                                                                       >  1:35616/1‑163 (MQ=255)                                                                                                                                                  tccGGCTACGCCACCTCGATGCGCTCGATGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTATGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGt                                                                                                                                                                                   <  2:715649/125‑1 (MQ=255)                                                                                                                                                           gCCACCTCGATGCGCTCGATGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTATGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGcc                                                                                                                           <  1:158155/174‑1 (MQ=255)                                                                                                                                                             cACCTCGATGCGCTCGATGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTATGCCaaggcgggcaagcatttgcgcgtggtgcatttgtcg                                                                                                                                                                                                   >  1:450058‑M1/1‑64 (MQ=255)                                                                                                                                                             cACCTCGATGCGCTCGATGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTATGCCaaggcgggcaagcatttgcgcgtggtgcatttgtcg                                                                                                                                                                                                   <  2:450056‑M1/100‑37 (MQ=255)                                                                                                                                                             cACCTCGATGCGCTCGATGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTATGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTaa                                                                                                                                                <  2:175064/151‑1 (MQ=255)                                                                                                                                                             cACCTCGATGCGCTCGATGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTATGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTaa                                                                                                                                                >  1:175066/1‑151 (MQ=255)                                                                                                                                                              agcTCGATGCGCGCGATGACCCAGGGCCGGGCCAGCGTCTCGATGGAGTTCACCCGCTATGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAg                                                                                                                                                                                <  2:170952/116‑1 (MQ=255)                                                                                                                                                                  cGATGCGCTCGATGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTATGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATtgt                                                                                                          <  2:548814/184‑1 (MQ=255)                                                                                                                                                                         cacGATGACCCAGGGCCGGGCCAGCTTCGCGATGGAGTTCACCCGCTATGGCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAg                                                                                                                                                                                <  1:144221/105‑1 (MQ=255)                                                                                                                                                                                             ccAGCTTCTCGATGGAGTTCACCCGCTATGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCCCCTACAGGCTGGCCGCAGGCCCAAACATTGCGCGCCCCCCTGtc                                                                                             >  2:172497/1‑169 (MQ=255)                                                                                                                                                                                              cAGCTTCTCGATGGAGTTCACCCGCTATACCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCgga                                                                                                                                                                            >  2:61707/1‑89 (MQ=255)                                                                                                                                                                                                                         tGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCCCCGCTc  >  1:419050/1‑233 (MQ=255)                                                                                                                                                                                                                            |                                                                                                                                                                                                                                      GGTGATGAAGGTAGAGGTGGTGACGCCGGAGGAATATCAGGGCGACATCCTCGGCGACTTGAGCCGACGTCGCGGCATGATCCAGGACGGTGATGAAACACCGGCTGGCAAGGTGATACGTGCCGAAGTGCCGTTGGGTGAAATGTTCGGCTACGCCACCTCGATGCGCTCGATGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTATGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTC  >  AE015451/4647274‑4647722

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.