New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	4833372 =	43 (0.980)	6 (0.150)	5/324	NT	12.8%	coding (683/801 nt)	PP_4246	Periplasmic binding protein
	?	AE015451	4833436 =	41 (0.990)					coding (619/801 nt)	PP_4246	Periplasmic binding protein

CCACTACGCGTTTGCCAGCTTCAACGCTGACCCGGACTACCTGCGCAAGACATACAACGCAACCCTGACCTACTCCCACGACAGCAACCTGCTGATGGTGCAGGCCGGCCGCGCCGATATTGCCCTGGTCACGCGTTCCTACCTCAGCGATTTCCTGGCACGCAACCCGGCGAGCAGGGCGCAGCTGGTGCCTTCACAACGCATTGACCAGGTCTATCACCACTACGCCTTGCTGCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4833611‑4833372 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgcgcccTGCTCGCCGGGTTGCGTGCCAGGAAATCGCTGAGGTAGGAACGCGTGACCAGGGCAATATCGGCGCGGCCGGCCTGCACCATCAGCAGGTTGCTGTCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCC  >  AE015451/4833436‑4833640                                                                                                                                                                                                                                                                                                                                                                                                                                                               CCACTACGCGCTTGCCAGCTTCAACGCTGACCCGGACTACCTGCGCAAGACATACAACGCAACCCTGACCTACTCCCACGACAGCAACCTGCTGATGGTGCAGGCCGGCCGCGCCGATATTGCCCTGGTCACGCGTTCCTACCTCAGCGATTTCCTGGCACGCAACCCGGCGAGCAGGGCGCAGCTGGTGCCTTCACAACGCATTGACCAGGTCTATCACCACTACGCCTTGCTGC                                                                                                                                                                                                                   <  1:208805/236‑1                                        CCTGCGCAAGACATACAACGCAACCCTGACCTACTCCCACGACAGCAACCTGCTGATGGTGCAGGCCGGCCGCGCCGATATTGCCCTGGTCACGCGTTCCTACCTCAGCGATTTCCTGGCACGCAACCCGGCGAGCAGGGCGCAGCTGGTGCCTTCACAACGCATTGACCAGGTCTATCACCACTACGCCTTGCTGCG                                                                                                                                                                                                                  <  1:805595/198‑1                                                         ACGCAACCCTGACCTACTCCCACGACAGCAACCTGCTGATGGTGCAGGCCGGCCGCGCCGATATTGCCCTGGTCACGCGTTCCTACCTCAGCGATTTCCTGGCACGCAACCCGGCGAGCCGGGCGCCGCTGGTGCCTTCACAACGCATTGAACAGGTCTATCACCACTACGCCTTGCTGCGCCCTGCGCGCCGG                                                                                                                                                                                                     >  1:49730/1‑194                                                                                                  tTGCAGGCCGGCCGCGCCGATATTGCCCTGGTCACGCGTTCCTACCTCAGCGATTTCCTGGCACGCAACCCGGCGAGCAGGGCGCAGCTGGTGCCTTCACAACGCATTGACCAGGTCTATCACCACTACGCCTTGCTGCGCCCTGCTCGCCGGGTTGCGTGCCAGGAAATCGCTGAGGTAGGAACGCGT                                                                                                                                                                 <  2:683097/188‑1                                                                                                                         TGCCCGGGTCACGCGTGCCTACCTCAGCGATTTCCTGGCACGCAACCCGGCGAGCAGGGCGCAGCTGGTGCCTTCACAACGCATTGACCAGGTCTATCACCACTACGCCTTGCTGCGCCCTGCTCGCCGGGTTGCGTGCCAGGAAATCGCTGAGGT                                                                                                                                                                           <  2:322131/156‑1                                                                                                                           CCCGGGTCACGCGTTCCTACCTCAGCGATTTCCTGGCACGCAACCCGGCGAGCAGGGCGCAGCTGGTGCCTTCACAACGCATTGACCAGGTCTATCACCACTACGCCTTGCTGCGCCCTGCTCGCCGGGTTGCGTGCCAGGAAATCGCTGAGGTAGGAACGCGTGACCAGGGCAATAT                                                                                                                                                   <  1:495314/178‑1                                                                                                                             cttGTCACGCGTTCCTACCTCAGCGATTTCCTGGCACGCAACCCGGCGAGCAGGGCGCAGCTGGTGCCTTCACACCGCATTGACCAGGTCTATCACCACTACGCCTTGCTGCGCCC                                                                                                                                                                                                               <  2:190333/113‑1                                                                                                                                                        tcCCTGGCACGCAACCCGGCGAGCAGGGCGCAGCTGGTGCCTTCACAACGCATTGACCAGGTCTATCACCACTACGCCTTGCTGCGCCCCGCTCGCCGGGTTGCGTGCCAGGAAATCGCTGAGGTAGGAACGCGTGACCAGGGCAATATCGGCGCGGCCGGCCTGCACCATCAGCAGG                                                                                                                      <  1:559163/176‑1                                                                                                                                                                                                                           cCCACGACGCCTTGCTGCGCCCGGCTCGCCGGGTTGCTGGCCAGGAAATCGCTGAGGTAGGAACGCGTGGCCAGGGCAATATCGGCGCGGCCGGCCTGCACCATCAGCAGG                                                                                                                      <  2:49730/110‑1                                                                                                                                                                                                                                          TGCGCCCTGCTCGCCGGGTTGCGTGCCAGGAAATCGCTGAGGTAGGAACGCGTGACCAGGGCAATATCGGCGCGGCCGGCCTGCACCATCAGCAGGTTGCTGTCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCC  >  2:527289/1‑212                                                                                                                                                                                                                                                                                                                                                                                                                                                               CCACTACGCGTTTGCCAGCTTCAACGCTGACCCGGACTACCTGCGCAAGACATACAACGCAACCCTGACCTACTCCCACGACAGCAACCTGCTGATGGTGCAGGCCGGCCGCGCCGATATTGCCCTGGTCACGCGTTCCTACCTCAGCGATTTCCTGGCACGCAACCCGGCGAGCAGGGCGCAGCTGGTGCCTTCACAACGCATTGACCAGGTCTATCACCACTACGCCTTGCTGCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4833611‑4833372 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgcgcccTGCTCGCCGGGTTGCGTGCCAGGAAATCGCTGAGGTAGGAACGCGTGACCAGGGCAATATCGGCGCGGCCGGCCTGCACCATCAGCAGGTTGCTGTCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCC  >  AE015451/4833436‑4833640

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.