New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5167670	43 (0.980)	3 (0.070)	3/322	NT	12.6%	coding (210/3906 nt)	hrpA	ATP‑dependent helicase HrpA
	?	AE015451	= 5168146	1 (0.020)					intergenic (‑267/‑237)	hrpA/PP_4547	ATP‑dependent helicase HrpA/putative Glutamine synthetase

ACCTGGTAGCCGACCAGCGCGCCCAGGGGCGTGCCCAGCTCTTCAGCGACTCGCGCGGCCACACTACGCGCTGCGATCCTGCGTGGCTGGGTATGGGCGATCAACCCATGGCTGCCACGGCCAAGCTCCAGGCAGATTTTCGGCAACTGGGTCGTCTTGCCAGAGCCGGTTTCGCCGGCGATCACCAATACCTGGTTTTCGGCCAGGGCCTTCTTGATTTCGTCACGCTTGGCGGCGATGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5167428‑5167670 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgatgggcTGGGCGGGAGTCATGCCTTTGATACTCACATGCGGCGTAAGGTTGATTAAAGCAGTGAATGGCAACCTTTACATCGCACTTGGCTAAACATTCGTGTTGAAAGCACC  <  AE015451/5168146‑5168040                                                                                                                                                                                                                                                                                                                                                                ACCTGGTAGCCGACCAGCGCGCCCAGGGGCGTGCCCAGCTCTTCAGCGACTCGCGCGGCCACACTACGCGCTGCGATCCTGCGTGGCTGGGTATGGGCGATCAACCCATGGCTGCCACGGCCAAGCTCCAGGCAGATTTTCGGCAACTGGGTCGTCTTGCCAGAGCCGGTTTCGCCGGCGATCACCAATACCTGGTTTTCGGCCAGGGCCTTCTTGATTTCGTCACGCTTGGCGGC                                                                                                                    >  1:646026/1‑236        AGCCGACCAGCGCGCCCAGGGGCGTGCCCAGCTCTTCAGCGACTCGCGCGGCCACACTACGCGCTGCGATCCTGCGTGGCTGGGTATGGGCGATCAACCCATGGCTGCCACGGCCAAGCTCCAGGCAGATTTTCGGCAACTGGGTCGTCTTGCCAGAGCCGGTTTCGCCGGCGATCACCAATACCTGGTTTTCGGCCAGGGCCTTCTTGATTTCGTCACGCTTGGCGGCGATGGG                                                                                                              >  1:504675/1‑235              CCAGCGCGCCCAGGGGCGTGCCCAGCTCTTCAGCGACTCGCGCGGCCACACTACGCGCTGCGATCCTGCGTGGCTGGGTATGGGCGATCAACCCATGGCTGCCACGGCCAAGCTCCAGGCAGATTTTCGGCAACTGGGTCGTCTTGCCAGAGCCGGTTTCGCCGGCGATCACCAATACCTGGTTTTCGGCCAGGGCCTTCTTGATTTCGTCACGCTTGGCGGCGAT                                                                                                                 <  1:241489/226‑1              CCAGCGCGCCCAGGGGCGTGCCCAGCTCTTCAGCGACTCGCGCGGCCACACTACGCGCTGCGATCCTGCGTGGCTGGGTATGGGCGATCAACCCATGGCTGCCACGGCCAAGCTCCAGGCAGATTTTCGGCAACTGGGTCGTCTTGCCAGAGCCGGTTTCGCCGGCGATCACCAATACCTGGTTTTCGGCCAGGGCCTTCTTGATTTCGTCACGCTTGGCGGCGAT                                                                                                                 >  2:241487/1‑226                                                   TCGCGCGGCCACACTACGCGCTGCGATCCTGCGTGGCTGGGTATGGGCGATCAACCCATGGCTGCCACGGCCAAGCTCCAGGCAGATTTTCGGCAACTGGGTCGTCTTGCCAGAGCCGGTTTCGCCGGCGATCACCAATACCTGGTTTTCGGCCAGGGCCTTCTTGATTTCGTCACGCTTGGCGGCGATGGGCTGGGCGGGAGTCATGCCTTTGATACTCACATGCG                                                                           >  2:309116/1‑227                                                                                                                    CACGGCCAAGCTCCAGGCAGATTTTCGGCAACTGGGTCGTCTTGCCAGAGCCGGTTTCGCCGGCGATCACCAATCCCTGGTTTTCGGCCAGGGCCTTCTTGATTTCGTCACGCTTGGCGGCGAT                                                                                                                 <  2:375700/124‑1                                                                                                                                                                                                            CAGGGCCTTCTTGATTTCGTCACGCTTGGCGGCGATGGGCTGGGCGGGAGTCATGCCTTTGATACTCACATGCGGCGTAAGGTTGATTAAAGCAGTGAATGGCAACCTTTACATCGCACTTGGCTAAACATTCGTGTTGAAAGCACC  <  1:739108/147‑1                                                                                                                                                                                                            CAGGGCCTTCTTGATTTCGTCACGCTTGGCGGCGATGGGCTGGGCGGGAGTCATGCCTTTGATACTCACATGCGGCGTAAGGTTGATTAAAGCAGTGAATGGCAACCTTTACATCGCACTTGGCTAAACATTCGTGTTGAAAGCACC  >  2:739106/1‑147                                                                                                                                                                                                                                                                                                                                                                ACCTGGTAGCCGACCAGCGCGCCCAGGGGCGTGCCCAGCTCTTCAGCGACTCGCGCGGCCACACTACGCGCTGCGATCCTGCGTGGCTGGGTATGGGCGATCAACCCATGGCTGCCACGGCCAAGCTCCAGGCAGATTTTCGGCAACTGGGTCGTCTTGCCAGAGCCGGTTTCGCCGGCGATCACCAATACCTGGTTTTCGGCCAGGGCCTTCTTGATTTCGTCACGCTTGGCGGCGATGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5167428‑5167670 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgatgggcTGGGCGGGAGTCATGCCTTTGATACTCACATGCGGCGTAAGGTTGATTAAAGCAGTGAATGGCAACCTTTACATCGCACTTGGCTAAACATTCGTGTTGAAAGCACC  <  AE015451/5168146‑5168040

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.