New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5167670	43 (0.980)	3 (0.070)	3/322	NT	12.6%	coding (210/3906 nt)	hrpA	ATP‑dependent helicase HrpA
	?	AE015451	= 5168146	1 (0.020)					intergenic (‑267/‑237)	hrpA/PP_4547	ATP‑dependent helicase HrpA/putative Glutamine synthetase

CCCAGCTCTTCAGCGACTCGCGCGGCCACACTACGCGCTGCGATCCTGCGTGGCTGGGTATGGGCGATCAACCCATGGCTGCCACGGCCAAGCTCCAGGCAGATTTTCGGCAACTGGGTCGTCTTGCCAGAGCCGGTTTCGCCGGCGATCACCAATACCTGGTTTTCGGCCAGGGCCTTCTTGATTTCGTCACGCTTGGCGGCGATGGGCAGGTTGTCGTCGTAGCGTACGGTCGGCACGCTCTGCTGACGCGCGGTGACCTGAGCGCAGGAGGCCTGGACCTTCTCCACCCACTGCGCCAGCTTCGCCTCGTCGGGGCGCTTGCGCAGTTCGTGCAGTTGCCGGCGCAGGCAATGGCGGTCGGCAATCATGGCGTGGTCGAGGTTTTGCAGCAGTTTGTCGATGGCGTGGTCAGTC  >  AE015451/5167461‑5167877                                                                                                                                                                                                                  |                                                                                                                                                                                                                cccAGCTCTTCAGCGACTCGCGCGGCCACACTACGCGCTGCGATCCTGCGTGGCTGGGTATGGGCGATCAACCCATGGCTGCCACGGCCAAGCTCCAGGCAGATTTTCGGCAACTGGGTCGTCTTGCCAGAGCCGGTTTCGCCGGCGATCACCAATACCTGGTTTTCGGCCAGGGCCTTCTTGATTTCGTCACGCTTGGCGGCGATGGGCAGGTTGTCGTCGTAGCGTACGGTCg                                                                                                                                                                                        <  1:664617/235‑1 (MQ=255)  ccAGCTCTTCAGCGACTCGCGCGGCCACACTACGCGCTGCGATCCTGCGTGGCTGGGTATGGGCGATCAACCCATGGCTGCCACGGCCAAGCTCCAGGCAGATTTTCGGCAACTGGGTCGTCTTGCCAGAGCCGGTTTCGCCGGCGTTCACCAATACCTGGTTTTCGGCCAGGGCCTTCTTGATTTCGTCACGCTTGGCGGCGATGGGCCGGTTGTCGTCGTAGCGTACGGTCgg                                                                                                                                                                                       >  1:143814/1‑235 (MQ=255)       tctTCAGCGACTCGCGCGGCCACACTACGCGCTGCGATCCTGCGTGGCTGGGTATGGGCGATCAACCCATGGCTGCCACGGCCAAGCTCCAGGCAGATTTTCGGCAACTGGGTCGTCTTGCCAGAGCCGGTTTCGCCGGCGATCACCAATACCTGGTTTTCGGCCAGGGCCTTCTTGATTTCGTCACGCTTGGCGGCGATGGGCAGGTTGTCGTCGTAGCGTACGGTCGGCACGc                                                                                                                                                                                  >  1:788552/1‑235 (MQ=255)         tgcAGCGACTCGCGCGGCCACACTACGCGCTGCGATCCTGCGTGGCTGGGTATGGGCGATCAACCCATGGCTGCCACGGCCAAGCTCCAGGCAGATTTTCGGCAACTGGGTCGTCTTGCCAGAGCCGGTTTCGCCGGCGATCACCACTCCCTGGTTTTCGGCCAGGGCCTTCTTGATTTCGTCACGCTTGGCGGCGATGGGCAGGTTgtcg                                                                                                                                                                                                        <  1:319755/209‑1 (MQ=255)              cGACTCGCGCGGCCACACTACGCGCTGCGATCCTGCGTGGCTGGGTATGGGCGATCAACCCATGGCTGCCACGGCCAAGCTCCAGGCAGATTTTCGGCAACTGGGTCGTCTTGCCAGAGCCGGTTTCGCCGGCGATCACCAATACCTGGTTTTCGGCCAGGGCCTTCTTGATTTCGTCACGCTTGGCGGCGATGGGCAGGTTGTCGTCGTAGCGTACGGTCGGCACGCTctgct                                                                                                                                                                            >  1:241450/1‑234 (MQ=255)                  tCGCGCGGCCACACTACGCGCTGCGATCCTGCGTGGCTGGGTATGGGCGATCAACCCATGGCTGCCACGGCCAAGCTCCAGGCAGATTTTCGGCAACTGGGTCGTCTTGCCAGAGCCGGTTTCGCCGGCGATCACCAATACCTGGTTTTCGGCCAGGGCCTTCTTGATTTCGTCACGCTTGGCGGCGATGGGCtgggcgggagtcatgcctttgatactcacatgcg                                                                                                                                                                               >  2:309116‑M1/1‑193 (MQ=255)                   cgcgcgGCCACACTACGCGCTGCGATCCTGCGTGGCTGGGTATGGGCGATCAACCCATGGCTGCCACGGCCAAGCTCCAGGCAGATTTTCGGCAACTGGGTCGTCTTGCCAGAGCCGGTTTCGCCGGCGATCACCAATACCTGGTTTTCGGCCAGGGCCTTCTTGATTTCGTCACGCTTGGCGGCGATGGGCAGGTTGTCGTCGTAGCGTACGGTCGGCACGCTCTGCTGAcgcgc                                                                                                                                                                     >  1:780491/1‑236 (MQ=255)                    gcgcgGCCACACTACGCGCTGCGATCCTGCGTGGCTGGGTATGGGCGATCAACCCATGGCTGCCACGGCCAAGCTCCAGGCAGATTTTCGGCAACTGGGTCGTCTTGCCAGAGCCGGTTTCGCCGGCGATCACCAATACCTGGTTTTCGGCCAGGGCCTTCTTGATTTCGTCACGCTTGGCGGCGATGGGCAGGTTgtcg                                                                                                                                                                                                        >  2:445348/1‑200 (MQ=255)                      gcgGCCACACTACGCGCTGCGATCCTGCGTGGCTGGGTATGGGCGATCAACCCATGGCTGCCACGGCCAAGCTCCAGGCAGATTTTCGGCAACTGGGTCGTCTTGCCAGAGCCGGTTTCGCCGGCGATCACCAATACCTGGTTTTCGGCCAGGGCCTTCTTGATTTCGTCACGCTTGGCGGCGATGGGCAGGTTGTCGTCGTAGCGTACGGTCGGCACGCTCTGCTGACGCGCgg                                                                                                                                                                   >  1:593535/1‑235 (MQ=255)                                     gcTGCGATCCTGCGTGGCTGGGTATGGGCGATCAACCCATGGCTGCCACGGCCAAGCTCCAGGCAGATTTTCGGCAACTGGGTCGTCTTGCCAGAGCCGGTTTCGCCGGCGATCACCAATACCTGGTTTTCGGCCAGGGCCTTCTTGATTTCGTCACGCTTGGCGGCGATGGGCAGGTTGTCGTCGTAGCGTACGGTCGGCACGCTCTGCTGACGCGCGGTGACCTGAgcgc                                                                                                                                                       <  1:591407/232‑1 (MQ=255)                                         cGATCCTGCGTGGCTGGGTATGGGCGATCAACCCATGGCTGCCACGGCCAAGCTCCAGGCAGATTTTCGGCAACTGGGTCGTCTTGCCAGAGCCGGTTTCGCCGGCGATCACCAATACCTGGTTTTCGGCCAGGGCCTTCTTGATTTCGTCACGCTTGGCGGCGATGGGCAGGTTGTCGTCGTAGCGTACGGTCGGCACGCTCTGCTGACGCGCGGTGACCTGAGCGCAGGAGGcc                                                                                                                                               <  1:332693/236‑1 (MQ=255)                                           aTCCTGCGTGGCTGGGTATGGGCGATCAACCCATGGCTGCCACGGCCAAGCTCCAGGCAGATTTTCGGCAACTGGGTCGTCTTGCCAGAGCCGGTTTCGCCGGCGATCACCAATACCTGGTTTTCGGCCAGGGCCTTCTTGATTTCGTCACGCTTGGCGGCGATGGGCAGGTTGTCGTCGTAGCGTACGGTCGGCCCGct                                                                                                                                                                                 >  2:156286/1‑200 (MQ=255)                                            tCCTGCGTGGCTGGGTATGGGCGATCAACCCTTGGCTGCCACGGCCAAGCTCCAGGCAGATTTTCGGCAACTGGGTCGTCTTGCCAGAGCCGGTTTCGCCGGCGATCACCAATACCTGGTTTTCGGCCAGGGCCTTCTTGATTTCGTCACGCTTGGCGGCGATGGGCAGGTTGTCGTCGTAGCGTACGGTCGGCACGCTCTGCTGACGCGCGGTGACCTGAGCGCAGGAGGCCTg                                                                                                                                             <  1:119034/235‑1 (MQ=255)                                               tGCGTGGCTGGGTATGGGCGATCAACCCATGGCTGCCACGGCCAAGCTCCAGGCAGATTTTCGGCAACTGGGTCGTCTTGCCAGAGCCGGTTTCGCCGGCGATCACCAATACCTGGTTTTCGGCCAGGGCCTTCTTGATTTCGTCACGCTTGGCGGCGATGGGCAGGTTGTCGTCGTAGCGTACGGTCGGCACGCTctgct                                                                                                                                                                            <  1:632193/201‑1 (MQ=255)                                                    ggCTGGGTATGGGCGATCAACCCATGGCTGCCACGGCCAAGCTCCAGGCAGATTTTCGGCAACTGGGTCGTCTTGCCAGAGCCGGTTTCGCCGGCGATCACCAATACCTGGTTTTCGGCCAGGGCCTTCTTGATTTCGTCACGCTTGGCGGCGATGGGCAGGTTGTCGTCGTAGCGTACGGTCGGCACGCTCTGCTGAcgcgcg                                                                                                                                                                    >  2:51085/1‑204 (MQ=255)                                                            aTGGGCGATCAACCCATGGCTGCCACGGCCAAGCTCCAGGCAGATTTTCGGCAACTGGGTCGTCTTGCCAGAGCCGGTTTCGCCGGCGATCACCAATACCTGGTTTTCGGCCAGGGCCTTCTTGATTTCGTCACGCTTGGCGGCGATGGGCAGGTTGTCGTCGTAGCGTACGGTCGGCACGCTCTGCTGACGCGCGGTGACCTGAGCGCAGGAGGCCTGGACCTTCTccaccc                                                                                                                               >  2:749854/1‑233 (MQ=255)                                                                       aCCCATGGCTGCCACGGCCAAGCTCCAGGCAGATTTTCGGCAACTGGGTCGTCTTGCCAGAGCCGGTTTCGCCGGCGATCACCAATACCTGGTTTTCGGCCAGGGCCTTCTTGATTTCGTCACGCTTGGCGGCGATGGGCAGGTTGTCGTCGTAGCGTACGGTCGGCACGCTCTGCTGACGCGCGGTGACCTGAgcgc                                                                                                                                                       <  2:551964/198‑1 (MQ=255)                                                                       aCCCATGGCTGCCACGGCCAAGCTCCAGGCAGATTTTCGGCAACTGGGTCGTCTTGCCAGAGCCGGTTTCGCCGGCGATCACCAATACCTGGTTTTCGGCCAGGGCCTTCTTGATTTCGTCACGCTTGGCGGCGATGGGCAGGTTGTCGTCGTAGCGTACGGTCGGCACGCTCTGCTGACGCGCGGTGACCTGAGCGCAGGAGGCCTGGACCTTCTCCACCCACTg                                                                                                                           <  1:414627/226‑1 (MQ=255)                                                                        cccATGGCTGCCACGGCCAAGCTCCAGGCAGATTTTCGGCAACTGGGTCGTCTTGCCAGAGCCGGTTTCGCCGGCGATCACCAATACCTGGTTTTCGGCCAGGGCCTTCTTGATTTCGTCACGCTTGGCGGCGATGGGCAGGTTGTCGTCGTAGCGTACGGTCGGCACGCTCTGCTGAc                                                                                                                                                                         >  2:559056/1‑179 (MQ=255)                                                                        cccATGGCTGCCACGGCCAAGCTCCAGGCAGATTTTCGGCAACTGGGTCGTCTTGCCAGAGCCGGTTTCGCCGGCGATCACCAATACCTGGTTTTCGGCCAGGGCCTTCTTGATTTCGTCACGCTTGGCGGCGATGGGCAGGTTGTCGTCGTAGCGTACGGTCGGCACGCTCTGCTGACGCGCGGTGACCTGAGCGCAGGAGGCCTGGACCTTCTCCACCCACTGCGCCa                                                                                                                      >  2:678993/1‑230 (MQ=255)                                                                              gccgCCACGGCCAAGCTCCAGGCAGATTTTCGGCAACTGGGTCGTCTTGCCAGAGCCGGTTTCGCCGGCGATCACCAATACCTGGTTTTCGGCCAGGGCCTTCTTGATTTCGTCACGCTTGGCGGCGATGGGCAGGTTGTCGTCGTAGCGTACGGTCGGCACGCTCTGCTGACGCGCGGTGACCTGAGCGCAGGAGGCCTGGACCTTCTCCACCCACTGCGCCAGCTTCGCCtcgt                                                                                                          <  1:196161/233‑1 (MQ=255)                                                                                tGCCACGGCCAAGCTCCAGGCAGATTTTCGGCAACTGGGTCGTCTTGCCAGAGCCGGTTTCGCCGGCGATCACCAATACCTGGTTTTCGGCCAGGGCCTGCTTGATTTCGTCACGCTTGGCGGCGATGGGCAGGTTGTCGTCGTAGCGTACGGTCGGCACGCTCTGCTGACGCGCGGTGACCTGAGCGCAGGAGGCCTGGACCTTCTCCACCCACTg                                                                                                                           >  1:518868/1‑217 (MQ=255)                                                                                    gcGGCCAAGCTCCAGGCAGATTTCCGGCAACTGGGTCGTCTTGCCAGAGCCGGTTTCGCCGGCGATCACCAATACCTGGTTGTCGGCCAGGGCCTTCTTGATTTCGTCACGCTTGGCGGCGATGGGCAGGTTGTCGTCGTAGCGTa                                                                                                                                                                                              <  2:169949/145‑1 (MQ=255)                                                                                     cGGCCAAGCTCCAGGCAGATTTTCGGCAACTGGGTCGTCTTGCCAGAGCCGGTTTCGCCGGCGATCACCAATACCTGGTTTTCGGCCAGGGCCTTCTTGATTTCGTCACGCTTGGCGGCGATGGGCAGGTTGTCGTCGTAGCGTACGGTCGGCACGCTCTGCTGAcgcgcg                                                                                                                                                                    >  1:169990/1‑171 (MQ=255)                                                                                           aGCTCCAGGCAGATTTTCGGCAACTGGGTCGTCTTGCCAGAGCCGGTTTCGCCGGCGATCACCAATCCCTGGTTTTCGGTGAGGGCCTTCTTGATTTCGTCACGCTTGGCGGCGATGGGCAGGTTGTCGTCGTAGCGTACGGTCg                                                                                                                                                                                        <  2:636664/145‑1 (MQ=255)                                                                                           aGCTCCAGGCAGATTTTCGGCAACTGGGTCGTCTTGCCAGAGCCGGTTTCGCCGGCGATCACCAATACCTGGTTTTCGGCCAGGGCCTTCTTGATTTCGTCACGCTTGGCGGCGATGGGCAGGTTGTCGTCGTAGCGTACGGTCGGCACGCTCTGCTGAcg                                                                                                                                                                        >  2:170145/1‑161 (MQ=255)                                                                                                          ttCGGCAACTGGGTCGTCTTGCCAGAGCCGGTTTCGCCGGCGATCACCAATACCTGGTTTTCGGCCAGGGCCTTCTTGATTTCGTCACGCTTGGCGGCGATGGGCAGGTTGTCGTCGTAGCGTACGGTCGGCACGCTCTGCTGACGCGCGGTGACCTGAGCGCAGGAGGCCTGGACCTTCTCCACCCACTGCGCCAGCTTCGCCTCGTCGGGGCGCTTGCGCAGTTCCGGCAGTTg                                                                              >  1:209197/1‑236 (MQ=255)                                                                                                                                cAGAGCCGGTTTCGCCGGCGATCACCAATACCTGGTTTTCGGCCAGGGCCTTCTTGATTTCGTCACGCTTGGCGGCGATGGGCAGGTTGTCGTCGTAGCGTACGGTCGGCACGCTCTGCTGACGCGCGGTGACCTGAGCGCAGGAGGCCTGGACCTTCTCCACCCACTGCGCCAGCTTCGCCTCGTCGGGGCGCTTGCGCAGTTCGTGCAGTTGCCGGCGCAGGCAATGGCGGt                                                          <  2:788550/234‑1 (MQ=255)                                                                                                                                    gCCGGTTTCGCCGGCGATCACCAATACCTGGTTTTCGGCCAGGGCCTTCTTGATTTCGTCACGCTTGGCGGCGATGGGCAGGTTGTCGTCGTAGCGTACGGTCGGCACGCTCTGCTGACGCGCGGTGACCTGAGCGCAGGAGGCCTGGACCTTCTCCACCCACTGCGCCAGCTTCGCCTCGTCGGGGCGCTTGCGCAGTTCGTGCAGTTGCCGGCGCAGGCAATGGCGGTCGGCaa                                                    >  1:769031/1‑236 (MQ=255)                                                                                                                                    gCCGGTTTCGCCGGCGATCACCAATACCTGGTTGTCGGCCAGGGCCTTCTTGATGTCGTCACGCTTGGCGGCGATGGGCAGGTTGTCGTCGTAGCGTACGGGCGGCACGCTCTGCTGACGCGCGGTGACCTGAGCGCAGGAGGCCTGGACCt                                                                                                                                        <  2:68792/152‑1 (MQ=255)                                                                                                                                     ccGGTTTCGCCGGCGATCACCAATACCTGGTTTTCGGCCAGGGCCTTCTTGATTTCGTCACGCTTGGCGGCGATGGGCAGGTTGTCGTCGTAGCGTACGGTCGGCACGCTCTGCTGACGCGCGGTGACCTGAGCGCAGGAGGCCTGGACCTTCTCCACCCACTGCGCCAGCtt                                                                                                                  <  1:15619/173‑1 (MQ=255)                                                                                                                                      cGGTTTCGCCGGCGATCACCAATACCTGGTTTTCGGCCAGGGCCTTCTTGATTTCGTCACGCTTGGCGGCGATGGGCAGGTTGTCGTCGTAGCGTACGGTCGGCACGCTCTGCTGACGCGCGGTGACCTGAGCGCAGGAGGCCTGGACCTTCTCCACCCACTGCGCCAGCTTCGCCTCGTCGGGGCGCTTGCGCAGTTCGTGCAg                                                                                 <  2:646024/205‑1 (MQ=255)                                                                                                                                        gTTTCGCCGGCGATCACCAATACCTGGTTTTCGGCCAGGGCCTTCTTGATTTCGTCACGCGTGGCGGCGATGGGCAGGTTGTCGTCGTAGCGTACGGTCGGCACGCTCTGCTGACGCGCGGTGACCTGAGCGCAGGAGGCCTGGACCTTCTCCACCCACTGCGCCAGCTTCGCCTCGTCGGGGCGCTTGCGCAGTTCGTGCAGTTGCCGGCGCAGGCAATGGCGGTCGGCAATCAt                                                <  1:51085/236‑1 (MQ=255)                                                                                                                                                                    tttCGGCCAGGGCCTTCTTGATTTCGTCACGCTTGGCGGCGATGGGCAGGTTgtcgt                                                                                                                                                                                                       >  1:312012/1‑57 (MQ=255)                                                                                                                                                                    tttCGGCCAGGGCCTTCTTGATTTCGTCACGCTTGGCGGCGATGGGCAGGTTgtcgt                                                                                                                                                                                                       <  2:312010/57‑1 (MQ=255)                                                                                                                                                                    tttCGGCCAGGGCCTTCTTGATTTCGTCACGCTTGGCGGCGATGGGCAGGTTGTCGTCGTAGCGTACGGTCGGCACGCTCTGCTGACGCGCGGTGACCTGAGCGCAGGAGGCCTGGACCTTCTCCACCCACTGCGCCAGCTTCGCCTCGTCGGGGCGCTTGCGCAGTTCGTGCAGTTGCCGGCGCAGGCAATGGCGGTCGGCAATCATGGCGTGGTCGAGGTTTTGCAGCAGTTTg                    >  1:458491/1‑236 (MQ=255)                                                                                                                                                                      tCGGCCAGGGCCTTCTTGATTTCGTCACGCTTGGCGGCGATGGGCAGGTTGTCGTCGTAGCGTACGGTCGGCACGCTCTGCTGACGCGCGGTGACCTGAGCGCAGGAGGCCTGGACCTTCTCCACCCACTGCGCCAGCTTCGCCTCGTCGGGGCGCTTGCGCAGTTCGTGCAGTTGCCgg                                                                          >  1:340621/1‑180 (MQ=255)                                                                                                                                                                           cAGGGCCTTCTTGATTTCGTCACGCTTGGCGGCGATGGGCtgggcgggagtcatgcctttgatactcacatgcggcgtaaggttgattaaagcagtgaatggcaacctttacatcgcacttggctaaacattcgtgttgaaagcacc                                                                                                      >  2:739106‑M1/1‑40 (MQ=255)                                                                                                                                                                           cAGGGCCTTCTTGATTTCGTCACGCTTGGCGGCGATGGGCtgggcgggagtcatgcctttgatactcacatgcggcgtaaggttgattaaagcagtgaatggcaacctttacatcgcacttggctaaacattcgtgttgaaagcacc                                                                                                      <  1:739108‑M1/147‑108 (MQ=255)                                                                                                                                                                              ggCCTTCTTGATTTCGTCACGCTTGGCGGCGATGGGCAGGTTGTCGTCGTAGCGTACGGTCGGCACGCTCTGCTGACGCGCGGTGACCTGAGCGCAGGAGGCCTGGACCTTCTCCACCCACTGCGCCAGCTTCGCCTCGTCGGGGCGCTTGCGCAGTTCGTGCAGTTGCCGGCGCAGGCAATGGCGGTCGGCAATCATGGCGTGGTCGAGGTTTTGCAGCAGTTTGTCGATGGCGt          <  1:678793/236‑1 (MQ=255)                                                                                                                                                                                          ttCGTCACGCTTGGCGGCGATGGGCAGGTTGTCGTCGTAGCGTACGGTCGGCACGCTCTGCTGACGCGCGGTGACCTGAGCGCAGGAGGCCTGGACCTTCTCCACCCACTGCGCCAGCTTCGCCTCGTCGGGGCGCTTGCGCAGTTCGTGCAGTTGCCGGCGCAGGCAATGGCGGTCGGCAATCATGGCGTGGTCGAGGTTTTGCAGCAGTTTCTCGATGGCGTGgtcagtc  <  2:769029/232‑1 (MQ=255)                                                                                                                                                                                                  gCTTGGCGGCGATGGGCAGGTTGTCGTCGTAGCGTACGGTCGGCACGCTCTGCTGACGCGCGGTGACCTGAGCGCAGGAGGCCTGGACCTTCTCCACCCACTGCGCCAGCTTCGCCTCGTCGGGGCGCTTGCGCAGTTCGTGCAGTTGCCGGCGCAGGCAATGGCGGTCGGCAATCATGGCGTGGTCGAGGTTTTg                              <  2:209384/196‑1 (MQ=255)                                                                                                                                                                                                  gCTTGGCGGCGATGGGCAGGTTGTCGTCGTAGCGTACGGTCGGCACGCTCTGCTGACGCGCGGTGACCTGAGCGCAGGAGGCCTGGACCTTCTCCACCCACTGCGCCAGCTTCGCCTCGTCGGGGCGCTTGCGCAGTTCGTGCAGTTGCCGGCGCAGGCAATGGCGGTCGGCAATCATGGCGTGGTCGAGGTTTTg                              >  1:209386/1‑196 (MQ=255)                                                                                                                                                                                                   gttGGCGGCGATGGGCAGGTTGGCGTCGTAGCGTACGGTCGGCACGCTCTGCTGACGCGCGGTGACCTGAGCGCAGGAGGCCTGGACCTTCTCCACCCACTGCGCCAGCTTCGCCTCGTCGGGGCGCTTGCGCAGTTCGTGCAGTTGCCGGCGCAGGCAATGGCGGTCGGCAATCATGGCGTGGTCGAGGTTTTg                              <  1:52824/194‑1 (MQ=255)                                                                                                                                                                                                    ttGGCGGCGATGGGCAGGTTGTCGTCGTAGCGTACGGTCGGCACGCTCTGCTGACGCGCGGTGACCTGAGCGCAGGAGGCCTGGACCTTCTCCACCCACTGCGCCAGCTTCGCCTCGTCGGGGCGCTTGCGCAGTTCGTGCAGTTGCCGGCGCAGGCAATGGCGGt                                                          <  2:181232/166‑1 (MQ=255)                                                                                                                                                                                                    ttGGCGGCGATGGGCAGGTTGTCGTCGTAGCGTACGGTCGGCACGCTCTGCTGACGCGCGGTGACCTGAGCGCAGGAGGCCTGGACCTTCTCCACCCACTGCGCCAGCTTCGCCTCGTCGGGGCGCTTGCGCAGTTCGTGCAGTTGCCGGCGCAGGCAATGGCGGTCGGCAATCATGGCGTGGTCGAGGTTTTGCAGCAGTTTGTCGATGGCGTGgtcagtc  <  1:678995/222‑1 (MQ=255)                                                                                                                                                                                                               gggCAGGTTGTCGTCGTAGCGTACGGTCGGCACGCTCTGCTGACGCGCGGTGACCTGAGCGCAGGAGGCCTGGACCTTCTCCACCCACTGCGCCAGCTTCGCCTCGTCGGGGCGCTTGCGCAGTTCGTGCAGTTGCCGGCGCAGGCAATGGCGGTCGGCAATCATGGCGTGGTCGAGGTTTTgc                             >  2:610107/1‑184 (MQ=255)                                                                                                                                                                                                                  |                                                                                                                                                                                                                CCCAGCTCTTCAGCGACTCGCGCGGCCACACTACGCGCTGCGATCCTGCGTGGCTGGGTATGGGCGATCAACCCATGGCTGCCACGGCCAAGCTCCAGGCAGATTTTCGGCAACTGGGTCGTCTTGCCAGAGCCGGTTTCGCCGGCGATCACCAATACCTGGTTTTCGGCCAGGGCCTTCTTGATTTCGTCACGCTTGGCGGCGATGGGCAGGTTGTCGTCGTAGCGTACGGTCGGCACGCTCTGCTGACGCGCGGTGACCTGAGCGCAGGAGGCCTGGACCTTCTCCACCCACTGCGCCAGCTTCGCCTCGTCGGGGCGCTTGCGCAGTTCGTGCAGTTGCCGGCGCAGGCAATGGCGGTCGGCAATCATGGCGTGGTCGAGGTTTTGCAGCAGTTTGTCGATGGCGTGGTCAGTC  >  AE015451/5167461‑5167877

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.