New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5233542	31 (0.710)	3 (0.070)	3/324	NT	8.4%	coding (406/513 nt)	PP_4611	RNA polymerase sigma‑70 factor, ECF subfamily
	?	AE015451	= 5233549	36 (0.870)					coding (413/513 nt)	PP_4611	RNA polymerase sigma‑70 factor, ECF subfamily

CCAAACGCGTATTGTGTAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5233348‑5233542 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcccaggCCGTCGACCTGGGCCAGCAGGAAGGCGCGTTTGACCAACGGTGGAAGGCCGTCCAGCAAGTGGTCGAGCGCTAGCAATGTCTCGAAGATGATCGCCTTCTGTTCCTCGCACGGCGCGACCTCTTCCGGGACCTGTGCGAGCGCTTGCAGGTAGGCACGCTCCAGTTCCTGGCGGCGGAAGTGGTTACACAATACGCGTTTGGCTACGGTGGCAAGAAACGCACGCGGCTC  <  AE015451/5233549‑5233320                                                                                                                                                                                                                                                                                                                                                                                                                                           CCAAACGCGTATTGTGTAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCGCTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGG                                                                                                                                                                                                                                              >  1:86524/1‑189                                                                                                                                          GACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGCCGTCGACCTGGGCCAGCAGGAAGGCGCGTTTGACCAACGGTGGAAGGCCGTCCAGCAAGTGGTCGAGCGCTAGCAATGTCTC                                                                                                                                                     >  2:633411/1‑141                                                                                                                                                              TCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGCCGTCGACCTGGGCCAGCAGGAAGGCGCGTTTGACCAACGGTGGAAGGCCGTCCAGCAAGTGGTCGAGCGCTAGCAATGTCTCGAAGAT                                                                                                                                               >  1:604509/1‑127                                                                                                                                                              TCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGCCGTCGACCTGGGCCAGCAGGAAGGCGCGTTTGACCAACGGTGGAAGGCCGTCCAGCAAGTGGTCGAGCGCTAGCAATGTCTCGAAGAT                                                                                                                                               <  2:604507/127‑1                                                                                                                                                                                                CAGGCCGTCGACCTGGGCCAGCAGGAAGGCGCGTTTGACCAACGGTGGAAGGCCGTCCAGCAAGTGGTCGAGCGCTAGCAATGTCTCGAAGATGATCGCCTTCTGTTCCTCGCACGGCGCGACCTCTTCCGGGACCTGTGCGAGCGCTTGCAGGTAGGCACGCTCCAGTTCCTGGCGGCGGAAGTGGTTACACAATACGCGTTTGGCTACGGTGGCAAGAACCGCACGCGG     >  1:610817/1‑231                                                                                                                                                                                                CAGGCCGTCGACCTGGGCCAGCAGGAAGGCGCGTTTGACCAACGGTGGAAGGCCGTCCAGCAAGTGGTCGAGCGCTAGCAATGTCTCGAAGATGATCGCCTTCTGTTCCTCGCACGGCGCGACCTCTTCCGGGACCTGTGCGAGCGCTTGCAGGTAGGCACGCTCCAGTTCCTGGCGGCGGAAGTGGTTACACAATACGCGTTTGGCTACGGTGGCAAGAAACGCACGCGGCTC  >  1:375474/1‑234                                                                                                                                                                                                CAGGCCGTCGACCTGGGCCAGCAGGAAGGCGCGTTTGACCAACGGTGGAAGGCCGTCCAGCAAGTGGTCGAGCGCTAGCAATGTCTCGAAGATGATCGCCTTCTGTTCCTCGCACGGCGCGACCTCTTCCGGGACCTGTGCGAGCGCTTGCAGGTA                                                                                <  1:381899/156‑1                                                                                                                                                                                                CAGGCCGTCGACCTGGGCCAGCAGGAAGGCGCGTTTGACCAACGGTGGAAGGCCGTCCAGCAAGTGGTCGAGCGCTAGCAATGTCTCGAAGATGATCGCCTTCTGTTCCTCGCACGGCGCGACCTCTTCCGGGACCTGTGCGAGCGCTTGCAGGTA                                                                                >  2:381897/1‑156                                                                                                                                                                                                                                                                                                                                                                                                                                           CCAAACGCGTATTGTGTAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5233348‑5233542 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcccaggCCGTCGACCTGGGCCAGCAGGAAGGCGCGTTTGACCAACGGTGGAAGGCCGTCCAGCAAGTGGTCGAGCGCTAGCAATGTCTCGAAGATGATCGCCTTCTGTTCCTCGCACGGCGCGACCTCTTCCGGGACCTGTGCGAGCGCTTGCAGGTAGGCACGCTCCAGTTCCTGGCGGCGGAAGTGGTTACACAATACGCGTTTGGCTACGGTGGCAAGAAACGCACGCGGCTC  <  AE015451/5233549‑5233320

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.