New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5233542	31 (0.710)	3 (0.070)	3/324	NT	8.4%	coding (406/513 nt)	PP_4611	RNA polymerase sigma‑70 factor, ECF subfamily
	?	AE015451	= 5233549	36 (0.870)					coding (413/513 nt)	PP_4611	RNA polymerase sigma‑70 factor, ECF subfamily

GAGCCGCGTGCGTTTCTTGCCACCGTAGCCAAACGCGTATTGTGTAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGAACAGGCCGTGCATTGGTTGATCGAGTCGCAAGGTGATGACTTCGGCCAGGCGCAACAGCTGGCGTTCGACCACTGGTTGCAGGCCGACCTGGAGCATCAGCGGGCCT  >  AE015451/5233320‑5233784                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                            gAGCCGCGTGCGTTTCTTGCCACCGTAGCCAAACGCGTATTGTGTAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGcctg                                                                                                                                                                                                                                         >  1:375474‑M2/1‑230 (MQ=255)    ccGCGTGCGGTTCTTGCCACCGTAGCCAAACGCGTATTGTGTAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGcctg                                                                                                                                                                                                                                         >  1:610817‑M2/1‑227 (MQ=255)            gtTTCTTGCCACCGTAGCCAAACGCGTATTGTGTAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCGGGGCCAAGGCGaa                                                                                                                                                                                                                             >  1:236056/1‑235 (MQ=255)                                     gTATTGTGTAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTc                                                                                                                                                                                                      >  2:532980/1‑233 (MQ=255)                                              aaCCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGt                                                                                                                                                                                          >  1:760582/1‑236 (MQ=255)                                               aCCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACgggc                                                                                                                                                                                         >  1:115008/1‑234 (MQ=255)                                                      ccgccgCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAAtcgct                                                                                                                                                                                                                       >  2:392076/1‑199 (MQ=255)                                                                              cTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCa                                                                                                                                                                                        <  2:582051/206‑1 (MQ=255)                                                                              cTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCa                                                                                                                                                                                        >  1:582053/1‑206 (MQ=255)                                                                              cTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCt                                                                                                                                                                              >  2:767993/1‑216 (MQ=255)                                                                               tACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGcctg                                                                                                                                                                                                                                         <  1:381899‑M2/156‑5 (MQ=255)                                                                               tACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGcctg                                                                                                                                                                                                                                         >  2:381897‑M2/1‑152 (MQ=255)                                                                                   tGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGt                                                                                                                                                                                          >  1:459880/1‑199 (MQ=255)                                                                                            tCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCtg                                                                                                                                            >  1:440051/1‑236 (MQ=255)                                                                                              gCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAGtcg                                                                                                                                                                                                                         >  1:278946/1‑157 (MQ=255)                                                                                                   ggTCCCGGAAGAGGTCGCGCCGGGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCa                                                                                                                                                                                        <  1:392913/185‑1 (MQ=255)                                                                                                       ccGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCTAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTg                                                                                                                                                                             >  1:142473/1‑192 (MQ=255)                                                                                                         ggAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCt                                                                                                                                                                              <  2:49787/189‑1 (MQ=255)                                                                                                         ggAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCt                                                                                                                                                                              >  1:49787/1‑189 (MQ=255)                                                                                                                             aGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCgg                                                                                                              <  2:760580/233‑1 (MQ=255)                                                                                                                               gAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGAACa                                                                                                          <  1:412794/235‑1 (MQ=255)                                                                                                                                      aGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCtgt                                                                                                                                           >  2:19854/1‑195 (MQ=255)                                                                                                                                      aGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGC‑ACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGAACAGGCCGTg                                                                                                   >  2:497302/1‑234 (MQ=255)                                                                                                                                              atcTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGcctgggccagcaggaaggcgcgtttgaccaacggtgga                                                                                                                                                                                                       <  2:604507‑M2/127‑39 (MQ=255)                                                                                                                                              atcTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGcctgggccagcaggaaggcgcgtttgaccaacggtgga                                                                                                                                                                                                       >  1:604509‑M2/1‑89 (MQ=255)                                                                                                                                                 ttCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGAACAGGcc                                                                                                      <  2:423597/221‑1 (MQ=255)                                                                                                                                                    gagaCATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGcctgggccagcaggaaggcgcgtttgaccaacggtggaaggccgtccagcaagtggtc                                                                                                                                                                                   >  2:633411‑M2/1‑83 (MQ=255)                                                                                                                                                     agaCATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCCCTACCTGACCAAGGCAGc                                                                                                                                                                  >  1:654434/1‑157 (MQ=255)                                                                                                                                                                    tCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGAACa                                                                                                          <  2:707481/198‑1 (MQ=255)                                                                                                                                                                    tCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGAACAGGCCGTGCATTGGTTGAt                                                                                        >  2:228465/1‑216 (MQ=255)                                                                                                                                                                       tccACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCg                                                                                                               <  2:217082/189‑1 (MQ=255)                                                                                                                                                                               cTGGACGGCCTTCCACCGTTGGTCAAACGCGCCGTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAAGCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCGCGTTTTCCCCGCtgg                                                                                                                    <  2:49705/177‑1 (MQ=255)                                                                                                                                                                                     ggCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGAACAGGCCGTGCATTGGTTGATCGAGTCGCAAGGTGATGACTTCGGCCAGGCGCAACAg                                                   >  1:506583/1‑236 (MQ=255)                                                                                                                                                                                               cGTTGGTCAATCGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCGCGCGAACTGGGCATTTCGCTGGCCACGGTCa                                                                                                                                                                                        <  2:498636/93‑1 (MQ=255)                                                                                                                                                                                                    gccAAACGCGCCTCCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCtg                                                                                                                     <  2:144844/153‑1 (MQ=255)                                                                                                                                                                                                         aCGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGAAc                                                                                                           <  2:153003/160‑1 (MQ=255)                                                                                                                                                                                                           gcgcCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGAACAGGCCGTGCATTGGTTGATCGAGTCGCAAGGTGATGACTTCGGCCAGGCGCAACAGCTGGCGTTCg                                         <  2:440049/224‑1 (MQ=255)                                                                                                                                                                                                                 tCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGAACAGGCCGTGCATTGGTTGATCGAGTCGCAAGGTGATGACTTCGGCCAGgc                                                          >  1:11213/1‑201 (MQ=255)                                                                                                                                                                                                                           ccAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCt                                                                                                                      >  2:185908/1‑131 (MQ=255)                                                                                                                                                                                                                                 cGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGAACAGGCCGTGCATTGGTTGATCGAGt                                                                                   <  1:228467/160‑1 (MQ=255)                                                                                                                                                                                                                                 cGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGAACAGGCCGTGCATTGGTTGATCGAGTCGCAAGGTGATGACTTCGGCCAGGCGCAAc                                                     <  1:127705/190‑1 (MQ=255)                                                                                                                                                                                                                                 cGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGAACAGGCCGTGCATTGGTTGATCGAGTCGCAAGGTGATGACTTCGGCCAGGCGCAACAGCTGGCGTTc                                          >  2:42086/1‑201 (MQ=255)                                                                                                                                                                                                                                 cGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGAACAGGCCGTGCATTGGTTGATCGAGTCGCAAGGTGATGACTTCGGCCAGGCGCAACAGCTGGCGTTCGACCACTGGTTGCAGGCCGACCTGGAGCATCAGCg       >  1:134900/1‑236 (MQ=255)                                                                                                                                                                                                                                    cGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAg                                                                                                                                                                   <  2:473521/77‑1 (MQ=255)                                                                                                                                                                                                                                      gCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGAACAGGCCGTGCATTGGTTGATCGAGTCGCAAGGTGATGACTTCGGCCAGGCGCAACAGCTGGCGTTCGACCACTGGTTGCAGGCCGACCTGGAGCa             >  2:526432/1‑225 (MQ=255)                                                                                                                                                                                                                                      gCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGAACAGGCCGTGCATTGGTTGATCGAGTCGCAAGGTGATGACTTCGGCCAGGCGCAACAGCTGGCGTTCGACCACTGGTTGCAGGCCGACCTGGAGCATCAGCGGGCCt  >  1:351626/1‑236 (MQ=255)                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                            GAGCCGCGTGCGTTTCTTGCCACCGTAGCCAAACGCGTATTGTGTAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGAACAGGCCGTGCATTGGTTGATCGAGTCGCAAGGTGATGACTTCGGCCAGGCGCAACAGCTGGCGTTCGACCACTGGTTGCAGGCCGACCTGGAGCATCAGCGGGCCT  >  AE015451/5233320‑5233784

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.