New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5415514	34 (0.780)	5 (0.120)	4/318	NT	12.0%	coding (263/1392 nt)	gabP‑V	gamma‑aminobutyrate permease
	?	AE015451	= 5415639	42 (1.030)					coding (138/1392 nt)	gabP‑V	gamma‑aminobutyrate permease

ATGAAGCCCAGGATGGCGGTGACCTTGAGGATGGCAAACCAGAACTCGAACTCGCCGTACTTGGCCACGCTGAACAGGTTGGTACCGGCCAGCAGCAACACCGAAGCCAGGGCGAAGATCCAGCTGTCCACCTGCGGGAACCAGGCGTTCAGCACATGCCCGGCGGCCAATGCTTCGATAGGAATGACCAGTACCCAGAACCACCAGTACAACCAGCCGATGGTATAGCCGGCCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5415277‑5415514 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccggcccagcAACCATAATTTCCTATTTCGTGGCCGGTACCCTGGTGGTACTGGTCATGCGCATGCTCGGCGAAATGGCCGTGGCGCACCCCGACACCGGATCGTTTTCCACCTATGCCGACCAGGCCATTGGCCGCTGGGCCGGCTATACCATCGGCTGGTTGTACTGGTGGTTCTGGGTACTGGTCATTCCTATCGAAGCATTGGCCGCCGGGCATGTGCTGAACGCCTGGTTCCCGCAGGT  <  AE015451/5415639‑5415406                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ATGAAGCCCAGGATGGCGGTGACCTTGAGGATGGCAAACCAGAACTCGAACTCGCCGTACTTGGCCACGCTGAACAGGTTGGTACCGGCCAGCAGCAACACCGAAGCCAGGGCGAAGATCCAGCTGTCCACCTGCGGGAACCAGGCGTTCAGCACATGCCCGGCGGCCAATGCTTCGATAGGAATGACCAGTACCCAGAACCACCAGTACAACCAGCCGATGGTATAGCCGGCCC                                                                                                                                                                                                                                               <  1:528870/235‑1      GCCCAGGAGGGCGGTGACCTTGAGGATGGCAAACCAGAACTCGACCTCGCCGTACTTGGCCACGCTGAACAGGTTGGTACCGGCCAGCAGCAACACCGAAGCCAGGGCGAAGATCCAGCTGTCCACCTGCGGGAACCAGGCGTTCAGCACATGCCCGGCGGCCAATGCTTCGATAGGAATGACCAGTACCCAGAACCACCAGTACAACCAGCCGATGGTATAGCCGGC                                                                                                                                                                                                                                                 <  1:71539/228‑1                                                                                           AGCAGCAACACCGAAGCCAGGGCGAAGATCCAGCTGTCCACCTGCGGGAACCAGGCGTTCAGCACATGCCCGGCGGCCAATGCTTCGATAGGAATGACCAGTACCCAGAACCACCAGTACAACCAGCCGATGGTATAGCCGGCCCA                                                                                                                                                                                                                                              >  1:754042/1‑146                                                                                                                          AGCTGTCCACCTGCGGGAACCAGGCGTTCAGCACATGCCCGGCGGCCAATGCTTCGATAGGAATGACCAGTACCCAGAACCACCAGTACAACCAGCCGATGGTATAGCCGGCCCAGCAACCATAATTTCCTATTTCGTGGCCGGTACCCTGGTGGTACTGGTCATGCGCATGCTCGGCGAAATGGCCGTGGCGCAC                                                                                                                                                             <  1:729902/196‑1                                                                                                                                          GAACCAGGCGTTCAGCACATGCCCGGCGGCCAATGCTTCGATAGGAATGACCAGTACCCAGAACCACCAGTACAACCAGCCGATGGTATAGCCGGCCC                                                                                                                                                                                                                                               >  2:695890/1‑98                                                                                                                                                                 CGGCGGCCAATGCTTCGATAGGAATGACCAGTACCCAGAACCACCAGTACAACCAGCCGTTGGTATAGCCGGCCCAGCAACCATAATTTCCTATTTCGTGGCCGGTACCCTGGTGGTACTGGTCATGCGCATGCTCGGCGAAATGGCCGTGGCGCACCCCGACACCGGATC                                                                                                                                               >  1:422991/1‑171                                                                                                                                                                                                             CAGTACAACCAGCCGATGGTATAGCCGGCCCAGCAACCATAATTTCCTATTTCGTGGCCGGTACCCTGGTGGTACTGGTCATGCGCATGCTCGGCGAAATGGCCGTGGCGCACCCCGACACCGGATCGTTTTCCACCTATGCCGACCAGGCCATTGGCCGCTGG                                                                                                          >  2:534497/1‑164                                                                                                                                                                                                             CAGTACAACCAGCCGATGGTATAGCCGGCCCAGCAACCATAATTTCCTATTTCGTGGCCGGTACCCTGGTGGTACTGGTCATGCGCATGCTCGGCGAAATGGCCGTGGCGCACCCCGACACCGGATCGTTTTCCACCTATGCCGACCAGGCCATTGGCCGCT                                                                                                            >  1:588034/1‑162                                                                                                                                                                                                                            ATGGTATAGCCGGCCCAGCAACCATAATTTCCTATTTCGTGGCCGGTACCCTGGTGGTACTGGTCATGCGCATGCTCGGCGAAATGGCCGTGGCGCACCCCGACACCGGATCGTTTTCCACCTATGCCGACCAGGCCATTGGCCGCTGGGCCGGC                                                                                                    >  2:340606/1‑155                                                                                                                                                                                                                                            AGCAACCATAATTTCCTATTTCGTGGCCGGTACCCTGGTGGTACTGGTCATGCGCATGCTCGGCGAAATGGCCGTGGCGCACCCCGACACCGGATCGTTTTCCACCTATGCCGACCAGGCCATTGGCCGCTGGGCCGGCTATACCATCGGCTGGTTGTACTGGTGGTTCTGGGTACTGGTCATTCCTATCGAAGCATTGGCCGCCGGGCATGTGCTGAACGCCTGGTTCCCGCA     >  1:712927/1‑234                                                                                                                                                                                                                                             GCAACCATAATTTCCTATTTCGTGGCCGGTACCCTGGTGGTACTGGTCATGCGCATGCTCGGCGAAATGGCCGTGGCGCACCCCGACACCGGATCGTTTTCCACCTATGCCGACCAGGCCATTGGCCGCTGGGCCGGCTATACCATCGGCTGGTTGTACTGGTGGTTCTGGGTACTGGTCATTCCTATCGAAGCATTGGCCGCCGGGCATGTGCTGAACGCCTGGTTCCCGCAGGT  >  1:297474/1‑236                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ATGAAGCCCAGGATGGCGGTGACCTTGAGGATGGCAAACCAGAACTCGAACTCGCCGTACTTGGCCACGCTGAACAGGTTGGTACCGGCCAGCAGCAACACCGAAGCCAGGGCGAAGATCCAGCTGTCCACCTGCGGGAACCAGGCGTTCAGCACATGCCCGGCGGCCAATGCTTCGATAGGAATGACCAGTACCCAGAACCACCAGTACAACCAGCCGATGGTATAGCCGGCCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5415277‑5415514 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccggcccagcAACCATAATTTCCTATTTCGTGGCCGGTACCCTGGTGGTACTGGTCATGCGCATGCTCGGCGAAATGGCCGTGGCGCACCCCGACACCGGATCGTTTTCCACCTATGCCGACCAGGCCATTGGCCGCTGGGCCGGCTATACCATCGGCTGGTTGTACTGGTGGTTCTGGGTACTGGTCATTCCTATCGAAGCATTGGCCGCCGGGCATGTGCTGAACGCCTGGTTCCCGCAGGT  <  AE015451/5415639‑5415406

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.