New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AE015451 = 543585347 (1.080)5 (0.120) 4/324 NT 11.3% coding (32/873 nt) fieF divalent cation efflux transporter
?AE015451 = 5435909 34 (0.820)coding (88/873 nt) fieF divalent cation efflux transporter

CAGCACCGCGGCAGCATCGAACAACTGGCCAGCCTGGGCCTGGTCCCGGCAGCCTGAGCCACAAGGACACTGACCACGGATGATCACTACCCCGGCTGAACACCAGCGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5435743‑5435853
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcgcctTGCTCAGCACCAGGATGCCGGCCACCGCCAGTGATGCGCGCGTGGCAAGGCGGAGCAGGCGCTGGTGTTCAGCCGGGGTAGTGATCATCCGTGGTCAGTGTCCTTGTGGCTCAGGCTGCCGGGACCAGGCCCAGGCTGGCCAGTTGTTCGATGCTGCCGCGGTGCTGGATCAGCCGTGGGTCGTTCAG  <  AE015451/5435909‑5435722
                                                                                                                                                                                                                                                                                                           
CAGCACCGCGGCAGCATCGAACAACTGGCCAGCCTGGGCCTGGTCCCGGCAGCCTGAGCCACAAGGACACTGACCACGGGTGATCACTACCCCGGCTGAACACCAGCGCCTTGCTCAGCACCAGGGTGCCGGCCACCGCCAGTGATGCGCGCGTG                                                                                                                                                  >  1:713879/1‑155
                              AGCCTGGGCCTGGTCCCGGCAGCCTGAGCCACAAGGACACTGACCACGGATGATCACTACCCCGGCTGAACACCAGCGCCTTGCACAGCAACAGGATGCCGGCCACCGCCAGTCATGCGCGCGc                                                                                                                                                   >  2:46521/1‑123
                                                                          CACGGATGATCACTACCCCGGCTGAACACCAGCGCCTTGCTCAGCACCAGGATGCCGGCCACCGCCAGTGATGCGCGCGTGGCAAGGCGGAGCAGGCGCTGGTGTTCAGCCGGGGTAGTGATCATCCGg                                                                                                  >  2:632056/1‑128
                                                                                     ACTACCCCGGCTGAACACCAGCGCCTTGCTCAGCACCAGGATGCCGGCCACCGCCAGTGATGCGCGCGTGGCAAGGCGGAGCAGGCGCTGGTGTTCAGCCGGGGTAGTGATCATCCGTGGTCAGTGTCCTTGTGGCTCAGGCTGCCGGGACCAGGCCCAGGCTGGCCAGTTGTTCGATGCTGCCGCGGTGCTGGATCAGCCGTGGGTCGTTCAG  >  1:321806/1‑214
                                                                                     ACTACCCCGGCTGAACACCAGCGCCTTGCTCAGCACCAGGATGCCGGCCACCGCCAGTGATGCGCGCGTGGCAAGGCGGAGCAGGCGCTGGTGTTCAGCCGGGGTAGTGATCATCCGTGGTCAGGGTCCTTGTGGCT                                                                               >  2:111171/1‑137
                                                                                                       gcGCGCCTTGCCAAGCACCGGGAGGCCGGCCACCGCCAGTGATGCGCGCGTGGCAAGGCGGAGCAGGCGCTGGTGTTCAGCCGGGGTAGTGATCATCCGTGGTCAGTGTCCTTGTGGCTCAGGCT                                                                         <  2:152334/123‑1
                                                                                                                                                                                                                                                                                                           
CAGCACCGCGGCAGCATCGAACAACTGGCCAGCCTGGGCCTGGTCCCGGCAGCCTGAGCCACAAGGACACTGACCACGGATGATCACTACCCCGGCTGAACACCAGCGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5435743‑5435853
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcgcctTGCTCAGCACCAGGATGCCGGCCACCGCCAGTGATGCGCGCGTGGCAAGGCGGAGCAGGCGCTGGTGTTCAGCCGGGGTAGTGATCATCCGTGGTCAGTGTCCTTGTGGCTCAGGCTGCCGGGACCAGGCCCAGGCTGGCCAGTTGTTCGATGCTGCCGCGGTGCTGGATCAGCCGTGGGTCGTTCAG  <  AE015451/5435909‑5435722

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.