New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	5441654 =	46 (1.050)	3 (0.070)	3/324	NT	6.5%	coding (930/1653 nt)	PP_4780	putative Acyl‑CoA dehydrogenase
	?	AE015451	5441706 =	43 (1.040)					coding (878/1653 nt)	PP_4780	putative Acyl‑CoA dehydrogenase

CACCGCCCCGATGACAACCGCAACCAGTTCTATATCCAGCGCCTGAAGAACAAGCTGGGCAACAGCTCCAACGCCTCCAGCGAGGTGGAGTTCCGCGGTGCGCTGGCGTGGATGATCGGCGAAGAGGGACGCGGCGTGCCGACCATCATCGAGATGGTCGCCATGACCCGGTTCGACTGCATGGTCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5441842‑5441654 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atggtcggcACGCCGCGTCCCTCTTCGCCGATCATCCACGCCAGCGCACCGCGGAACTCCACCTCGCTGGAGGCGTTGGAGCTGTTGCCCAGCTTGTTCTTCAGGCGCTGGATATAGAACTGGTTGCGGTTGTCATCGGGGCGGTGGCGCGGCAGCAGGAAGCAGCTCAGGCCTTTTTCGGTTTGCGCCAAGGTCAGGAAAGCGTCGCACATCGGCGCCGAGCAGAACCACTTGTG  >  AE015451/5441706‑5441932                                                                                                                                                                                                                                                                                                                                                                                                                                  CACCGCCCCGATGACAACCGCAACCAGTTCTATATCCAGCGCCTGAAGAACAAGCTGGGCAACAGCTCCAACGCCTCCAGCGAGGTGGAGTTCCGCGGTGCGCTGGCGTGGATGATCGGCGAAGAGGGACGCGGCGTGCCGACCATCATCGAGATGGTCGCCATGACCCGGTTCGACTGCAT                                                                                                                                                                                                                                            <  1:73175/182‑1                                                                                      TGGAGTTCCGCGGTGCGCTGGCGTGGATGATCGGCGAAGAGGGACGCGGCGTGCCGACCATCATCGAGATGGTCGCCATGACCCGGTTCGACTGCATGGTCGGCc                                                                                                                                                                                                                                    >  2:404046/1‑104                                                                                                                       GCGAAGAGGGACGCGGCGTGCCGACCATCATCGAGATGGTCGCCATGACCCGGTTCGACTGCATGGTCGGCACGCCGCGTCCCTCTTCGCCGATCATCCACGCCAGCGCACCGCGGAACTCCACCTCGCTGGAGGCGTTGGAGCTGTTGCCCAGCTTGTTCTTCAGGCGCTGGATATAG                                                                                                                         >  1:513910/1‑179                                                                                                                                                    cTCGAGATGGTCGCCATGCCCCGGTTCGACTGCATGGTCGGCACGCCGCGTCCCTCTTCGCCGATCATCCACGCCAGCGCACCGCGGAACTCCACCTCGCTGGAGGCGTTGGAGCTGTTGCCCAGCTTGTTCTTCAG                                                                                                                                      <  2:513908/136‑1                                                                                                                                                                GCCATGCCCCGGTTCGACTGCATGGT                                                                                                                                                                                                                                         <  2:317900/26‑1                                                                                                                                                                         CGGTTCGACTGCATGGTCGGCACGCCGCGTCCCTCTTCGCCGATCATCCACGCCAGCGCACCGCGGAACTCCACCTCGCTGGAGGCGTTGGAGCTGTTGCCCAGCTTGTTCTTCAGGCGCTGGATATAGAACTGGTTGCGGTTGTCATCGGGGCGGTGGCGCGGCAGCAGGAAGCAGCTCAGGCCTTTTTCGGTTTGCGCCAAGGTCAGGAAAGCGTAGCACATCGGCGCCGAGC               >  1:427672/1‑235                                                                                                                                                                                     ATGGTCGGCACGCCGCGTCCCTCTTCGCCGATCATCCACGCCAGCGCACCGCGGAACTCCACCTCGCTGGAGGCGTTGGAGCTGTTGCCCAGCTTGTTCTTCAGGCGCTGGATATAGAACTGGTTGCGGTTGTCATCGGGGCGGTGGCGCGGCAGCAGGAAGCAGCTCAGGCCTTTTTCGGTTTGCGCCAAGGTCAGGAAAGCGTCGCACATCGGCGCCGAGCAGAACCACTTGTG  >  1:426210/1‑236                                                                                                                                                                                           GGCACGCCGCGTCCCTCTTCGCCGATCATCCACGCCAGCGCACCGCGGAACTCCACCTCGCTGGAGGCGTTGGAGCTGTTGCCCAGCTTGTTCTTCAGGCGCTGGATATAGAACTGGTTGCGGTTGTCATCGGGGCGGTGGCGCGGCAGCAGGAAGCAGCTCAGGCCTTTTTCGGTTTGCGCCAAGGTCAGGAAAGCGTCGCACATCGGCGCCGAGC               >  1:274714/1‑217                                                                                                                                                                                                                                                                                                                                                                                                                                  CACCGCCCCGATGACAACCGCAACCAGTTCTATATCCAGCGCCTGAAGAACAAGCTGGGCAACAGCTCCAACGCCTCCAGCGAGGTGGAGTTCCGCGGTGCGCTGGCGTGGATGATCGGCGAAGAGGGACGCGGCGTGCCGACCATCATCGAGATGGTCGCCATGACCCGGTTCGACTGCATGGTCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5441842‑5441654 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atggtcggcACGCCGCGTCCCTCTTCGCCGATCATCCACGCCAGCGCACCGCGGAACTCCACCTCGCTGGAGGCGTTGGAGCTGTTGCCCAGCTTGTTCTTCAGGCGCTGGATATAGAACTGGTTGCGGTTGTCATCGGGGCGGTGGCGCGGCAGCAGGAAGCAGCTCAGGCCTTTTTCGGTTTGCGCCAAGGTCAGGAAAGCGTCGCACATCGGCGCCGAGCAGAACCACTTGTG  >  AE015451/5441706‑5441932

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.